Wall clock time and date at job start Mon Mar 30 2020 05:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00288 * 2 1 4 4 H 1.48506 * 109.46822 * 179.97438 * 3 2 1 5 5 H 1.48489 * 109.47001 * 299.99866 * 3 2 1 6 6 H 1.48499 * 109.47160 * 60.00125 * 3 2 1 7 7 C 1.37883 * 119.99236 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99662 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00547 * 359.97438 * 7 2 1 10 10 O 1.42895 * 109.47140 * 179.97438 * 9 7 2 11 11 C 1.42904 * 114.00121 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47497 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47373 * 64.99698 * 12 11 10 14 14 C 1.46854 * 110.99648 * 65.74825 * 13 12 11 15 15 C 1.53037 * 109.52285 * 185.80147 * 14 13 12 16 16 C 1.53114 * 109.31211 * 300.88400 * 15 14 13 17 17 H 1.09007 * 109.52681 * 297.73305 * 16 15 14 18 18 O 1.42901 * 109.52716 * 177.60360 * 16 15 14 19 19 C 1.53125 * 109.16368 * 57.63311 * 16 15 14 20 20 F 1.39901 * 109.49826 * 62.28534 * 19 16 15 21 21 F 1.39898 * 109.50528 * 182.40595 * 19 16 15 22 22 C 1.46840 * 111.00367 * 190.00264 * 13 12 11 23 23 H 0.97003 * 119.99549 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47047 * 60.00013 * 9 7 2 25 25 H 1.08999 * 109.46889 * 300.00029 * 9 7 2 26 26 H 1.09004 * 109.47169 * 59.99334 * 11 10 9 27 27 H 1.09008 * 109.46585 * 299.99989 * 11 10 9 28 28 H 1.09006 * 109.46677 * 304.99850 * 12 11 10 29 29 H 1.08994 * 109.47268 * 184.99935 * 12 11 10 30 30 H 1.09000 * 109.42692 * 65.80880 * 14 13 12 31 31 H 1.09000 * 109.49358 * 305.83873 * 14 13 12 32 32 H 1.09002 * 109.50283 * 180.92217 * 15 14 13 33 33 H 1.09003 * 109.50113 * 60.84405 * 15 14 13 34 34 H 0.96696 * 114.00348 * 179.97438 * 18 16 15 35 35 H 1.09001 * 109.46294 * 54.14190 * 22 13 12 36 36 H 1.09003 * 109.45458 * 294.17243 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2124 6 1 1.8906 2.3964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1943 0.0010 9 6 1.2509 -2.4992 0.0017 10 8 2.1794 -3.5854 0.0015 11 6 1.5648 -4.8755 0.0019 12 6 2.6477 -5.9564 0.0023 13 7 3.4078 -5.8876 1.2574 14 6 2.5601 -6.2333 2.4056 15 6 3.3411 -6.0119 3.7029 16 6 4.5994 -6.8842 3.6917 17 1 4.3136 -7.9354 3.6530 18 8 5.3608 -6.6395 4.8759 19 6 5.4406 -6.5371 2.4601 20 9 5.8490 -5.2011 2.5350 21 9 6.5650 -7.3682 2.4132 22 6 4.5991 -6.7442 1.1988 23 1 -0.4849 0.8401 0.0004 24 1 0.6239 -2.5575 -0.8880 25 1 0.6246 -2.5563 0.8920 26 1 0.9442 -4.9827 -0.8877 27 1 0.9451 -4.9823 0.8923 28 1 3.3212 -5.7961 -0.8397 29 1 2.1816 -6.9376 -0.0869 30 1 2.2628 -7.2796 2.3348 31 1 1.6713 -5.6024 2.4045 32 1 2.7172 -6.2841 4.5543 33 1 3.6263 -4.9627 3.7814 34 1 6.1735 -7.1601 4.9356 35 1 5.1905 -6.4843 0.3209 36 1 4.2926 -7.7883 1.1341 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595662636.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:53 Heat of formation + Delta-G solvation = -191.749627 kcal Electronic energy + Delta-G solvation = -21063.345186 eV Core-core repulsion = 17411.408567 eV Total energy + Delta-G solvation = -3651.936619 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.01040 -46.96113 -39.08743 -37.18071 -36.14351 -32.85668 -32.18314 -30.58475 -28.50917 -26.70659 -24.18284 -23.54774 -22.27497 -21.28801 -20.22698 -18.16154 -17.50915 -16.76061 -16.50753 -16.26141 -15.90494 -15.58418 -14.99903 -14.55198 -14.26272 -13.94702 -13.80033 -13.68082 -13.37381 -13.21986 -13.08154 -12.66140 -12.30276 -12.17967 -11.77858 -11.64833 -11.44728 -11.25599 -10.91553 -10.75789 -10.70322 -10.42412 -10.09345 -9.95760 -9.03497 -8.77687 -8.36522 -8.10961 -6.06639 -4.07115 3.33284 3.33388 3.39753 3.47511 3.58315 3.73733 3.94418 4.20714 4.39161 4.44966 4.74743 4.81865 4.92311 5.10300 5.22112 5.25548 5.30326 5.40030 5.45389 5.50241 5.63872 5.73636 5.92317 6.05542 6.15069 6.19416 6.89169 6.96291 7.13155 7.19771 7.46511 7.86117 8.20826 8.64258 9.07838 9.57798 11.05112 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.024494 B = 0.004652 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.868886 B = 6018.023057 C = 6440.009535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.379 6.379 11 C 0.065 3.935 12 C 0.064 3.936 13 N -0.518 5.518 14 C 0.050 3.950 15 C -0.113 4.113 16 C 0.075 3.925 17 H 0.079 0.921 18 O -0.547 6.547 19 C 0.261 3.739 20 F -0.174 7.174 21 F -0.204 7.204 22 C 0.020 3.980 23 H 0.262 0.738 24 H 0.002 0.998 25 H 0.003 0.997 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.036 0.964 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.382 0.618 35 H 0.102 0.898 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.737 -18.584 5.246 20.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.547 4.547 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.298 6.298 11 C -0.013 4.013 12 C -0.063 4.063 13 N -0.243 5.243 14 C -0.077 4.077 15 C -0.150 4.150 16 C 0.015 3.985 17 H 0.097 0.903 18 O -0.353 6.353 19 C 0.224 3.776 20 F -0.154 7.154 21 F -0.186 7.186 22 C -0.110 4.110 23 H 0.072 0.928 24 H 0.020 0.980 25 H 0.021 0.979 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.230 0.770 35 H 0.120 0.880 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.488 -17.513 5.420 19.447 hybrid contribution 0.419 -0.339 -0.295 0.614 sum 6.907 -17.852 5.125 19.816 Atomic orbital electron populations 1.69977 1.06100 1.26940 1.51049 1.24942 0.94951 0.99410 0.95248 0.86300 0.80159 0.82647 0.77540 1.19418 1.20926 1.20872 1.21110 0.94179 0.89307 1.50144 0.91430 1.20186 0.88821 0.83906 0.95099 1.87973 1.34605 1.12230 1.95004 1.22267 0.93582 0.86362 0.99088 1.22168 0.96315 0.96635 0.91151 1.61654 1.06643 1.52280 1.03716 1.22258 0.96924 0.99318 0.89220 1.21596 0.93341 1.02120 0.97971 1.22880 0.92300 1.00393 0.82927 0.90273 1.86599 1.39367 1.69313 1.39978 1.21857 0.82535 0.74255 0.98980 1.93087 1.91184 1.33878 1.97285 1.92981 1.55802 1.72262 1.97517 1.22921 0.93999 0.97014 0.97041 0.92816 0.97997 0.97890 0.93940 0.94410 0.89610 0.93798 0.94547 0.88230 0.89299 0.88548 0.77035 0.87959 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.30 29.54 -169.99 -5.02 17.28 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -15.25 9.43 -34.44 -0.32 -15.58 16 8 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 9 C 0.19 5.35 5.69 36.00 0.20 5.56 16 10 O -0.38 -9.12 10.27 -35.23 -0.36 -9.48 16 11 C 0.07 1.15 6.00 37.16 0.22 1.37 16 12 C 0.06 0.89 5.34 -3.83 -0.02 0.87 16 13 N -0.52 -7.35 4.54 -234.68 -1.07 -8.42 16 14 C 0.05 0.61 5.30 -3.83 -0.02 0.59 16 15 C -0.11 -1.36 5.62 -26.65 -0.15 -1.51 16 16 C 0.08 0.83 3.11 -26.61 -0.08 0.75 16 17 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 18 O -0.55 -6.24 13.24 -35.23 -0.47 -6.71 16 19 C 0.26 3.31 1.84 -26.65 -0.05 3.26 16 20 F -0.17 -2.91 16.51 2.25 0.04 -2.87 16 21 F -0.20 -2.44 16.78 2.25 0.04 -2.40 16 22 C 0.02 0.23 4.95 -3.84 -0.02 0.21 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 25 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.64 6.22 -51.92 -0.32 0.31 16 28 H 0.09 1.19 7.99 -51.93 -0.41 0.78 16 29 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 1.31 6.12 -51.93 -0.32 1.00 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 1.46 7.91 -51.93 -0.41 1.05 16 34 H 0.38 2.90 8.82 45.56 0.40 3.30 16 35 H 0.10 1.21 8.02 -51.93 -0.42 0.79 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 304.54 15.07 4.59 4.59 Total: -1.00 -33.86 304.54 -6.26 -40.12 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -4.41 Total: -2.67 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -0.34 Total: -2.97 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: -0.33 Total: -34.89 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.83 Total: -16.19 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.07 Total: -5.27 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.86 -6.26 -40.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595662636.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.634 kcal (2) G-P(sol) polarization free energy of solvation -33.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds