Wall clock time and date at job start Mon Mar 30 2020 05:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00288 * 2 1 4 4 H 1.48506 * 109.46822 * 179.97438 * 3 2 1 5 5 H 1.48489 * 109.47001 * 299.99866 * 3 2 1 6 6 H 1.48499 * 109.47160 * 60.00125 * 3 2 1 7 7 C 1.37883 * 119.99236 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99662 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00547 * 359.97438 * 7 2 1 10 10 O 1.42895 * 109.47140 * 179.97438 * 9 7 2 11 11 C 1.42904 * 114.00121 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47497 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47373 * 64.99698 * 12 11 10 14 14 C 1.46854 * 110.99648 * 65.74825 * 13 12 11 15 15 C 1.53037 * 109.52285 * 185.80147 * 14 13 12 16 16 C 1.53114 * 109.31211 * 300.88400 * 15 14 13 17 17 H 1.09007 * 109.52681 * 297.73305 * 16 15 14 18 18 O 1.42901 * 109.52716 * 177.60360 * 16 15 14 19 19 C 1.53125 * 109.16368 * 57.63311 * 16 15 14 20 20 F 1.39901 * 109.49826 * 62.28534 * 19 16 15 21 21 F 1.39898 * 109.50528 * 182.40595 * 19 16 15 22 22 C 1.46840 * 111.00367 * 190.00264 * 13 12 11 23 23 H 0.97003 * 119.99549 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47047 * 60.00013 * 9 7 2 25 25 H 1.08999 * 109.46889 * 300.00029 * 9 7 2 26 26 H 1.09004 * 109.47169 * 59.99334 * 11 10 9 27 27 H 1.09008 * 109.46585 * 299.99989 * 11 10 9 28 28 H 1.09006 * 109.46677 * 304.99850 * 12 11 10 29 29 H 1.08994 * 109.47268 * 184.99935 * 12 11 10 30 30 H 1.09000 * 109.42692 * 65.80880 * 14 13 12 31 31 H 1.09000 * 109.49358 * 305.83873 * 14 13 12 32 32 H 1.09002 * 109.50283 * 180.92217 * 15 14 13 33 33 H 1.09003 * 109.50113 * 60.84405 * 15 14 13 34 34 H 0.96696 * 114.00348 * 179.97438 * 18 16 15 35 35 H 1.09001 * 109.46294 * 54.14190 * 22 13 12 36 36 H 1.09003 * 109.45458 * 294.17243 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2124 6 1 1.8906 2.3964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1943 0.0010 9 6 1.2509 -2.4992 0.0017 10 8 2.1794 -3.5854 0.0015 11 6 1.5648 -4.8755 0.0019 12 6 2.6477 -5.9564 0.0023 13 7 3.4078 -5.8876 1.2574 14 6 2.5601 -6.2333 2.4056 15 6 3.3411 -6.0119 3.7029 16 6 4.5994 -6.8842 3.6917 17 1 4.3136 -7.9354 3.6530 18 8 5.3608 -6.6395 4.8759 19 6 5.4406 -6.5371 2.4601 20 9 5.8490 -5.2011 2.5350 21 9 6.5650 -7.3682 2.4132 22 6 4.5991 -6.7442 1.1988 23 1 -0.4849 0.8401 0.0004 24 1 0.6239 -2.5575 -0.8880 25 1 0.6246 -2.5563 0.8920 26 1 0.9442 -4.9827 -0.8877 27 1 0.9451 -4.9823 0.8923 28 1 3.3212 -5.7961 -0.8397 29 1 2.1816 -6.9376 -0.0869 30 1 2.2628 -7.2796 2.3348 31 1 1.6713 -5.6024 2.4045 32 1 2.7172 -6.2841 4.5543 33 1 3.6263 -4.9627 3.7814 34 1 6.1735 -7.1601 4.9356 35 1 5.1905 -6.4843 0.3209 36 1 4.2926 -7.7883 1.1341 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595662636.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:52 Heat of formation + Delta-G solvation = -218.841650 kcal Electronic energy + Delta-G solvation = -21064.519984 eV Core-core repulsion = 17411.408567 eV Total energy + Delta-G solvation = -3653.111417 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.02054 -48.02595 -40.09527 -38.50202 -37.48452 -34.94087 -33.38088 -31.59156 -29.99055 -28.55277 -25.26779 -24.51592 -24.41071 -22.45983 -21.18506 -19.05675 -18.66423 -18.45895 -17.66515 -17.49663 -17.33726 -17.02940 -16.39470 -16.02319 -15.53892 -15.39451 -14.95954 -14.85459 -14.62520 -14.37033 -14.20361 -13.78027 -13.66155 -13.51195 -13.13165 -12.95738 -12.81553 -12.71005 -12.54220 -12.32243 -12.22635 -11.79388 -11.67962 -11.21963 -10.97092 -10.83633 -10.14357 -9.29345 -8.31640 -6.42594 1.39111 1.40387 1.55408 2.35492 2.38893 2.70126 2.89199 3.02127 3.04609 3.24247 3.33756 3.58436 3.92325 4.01867 4.16284 4.18596 4.34528 4.38983 4.45313 4.53399 4.54761 4.65254 4.73238 4.83881 4.91252 4.99540 5.16731 5.21757 5.56782 5.91555 5.99365 6.02114 6.54998 6.58938 6.89454 7.29843 8.80805 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.024494 B = 0.004652 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.868886 B = 6018.023057 C = 6440.009535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.979 3.021 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.211 3.789 10 O -0.398 6.398 11 C 0.052 3.948 12 C 0.074 3.926 13 N -0.556 5.556 14 C 0.053 3.947 15 C -0.112 4.112 16 C 0.082 3.918 17 H 0.119 0.881 18 O -0.565 6.565 19 C 0.251 3.749 20 F -0.206 7.206 21 F -0.200 7.200 22 C 0.023 3.977 23 H 0.270 0.730 24 H -0.014 1.014 25 H -0.017 1.017 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.053 0.947 34 H 0.397 0.603 35 H 0.096 0.904 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.061 -20.028 5.363 21.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.190 4.190 3 Si 0.802 3.198 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.074 0.926 9 C 0.136 3.864 10 O -0.318 6.318 11 C -0.025 4.025 12 C -0.052 4.052 13 N -0.281 5.281 14 C -0.075 4.075 15 C -0.150 4.150 16 C 0.021 3.979 17 H 0.137 0.863 18 O -0.373 6.373 19 C 0.214 3.786 20 F -0.187 7.187 21 F -0.181 7.181 22 C -0.105 4.105 23 H 0.079 0.921 24 H 0.003 0.997 25 H 0.001 0.999 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.072 0.928 34 H 0.248 0.752 35 H 0.114 0.886 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.819 -18.991 5.538 20.924 hybrid contribution 0.310 0.020 -0.310 0.439 sum 7.129 -18.971 5.228 20.930 Atomic orbital electron populations 1.70066 1.07582 1.28475 1.50807 1.25895 0.95943 1.03161 0.94015 0.85199 0.78561 0.77655 0.78386 1.19298 1.19360 1.19622 1.21410 0.93884 0.91171 1.51807 0.92641 1.19759 0.88574 0.84891 0.93225 1.87921 1.34751 1.14026 1.95077 1.22690 0.95541 0.84449 0.99817 1.22077 0.95252 0.96813 0.91084 1.61496 1.07851 1.54525 1.04276 1.22239 0.95796 1.01078 0.88340 1.21570 0.94528 0.99935 0.98979 1.22931 0.91146 1.01951 0.81825 0.86329 1.86560 1.40426 1.70245 1.40110 1.22262 0.82870 0.72804 1.00634 1.93020 1.91602 1.36577 1.97506 1.92982 1.55731 1.71808 1.97602 1.22924 0.92773 0.98640 0.96198 0.92075 0.99652 0.99885 0.93036 0.93768 0.90039 0.89383 0.90623 0.90206 0.87406 0.92838 0.75227 0.88596 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 2 C 0.01 0.49 5.46 84.66 0.46 0.95 16 3 Si 0.98 45.86 29.54 68.60 2.03 47.88 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.55 -33.59 9.43 25.60 0.24 -33.35 16 8 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 9 C 0.21 12.06 5.69 71.23 0.41 12.46 16 10 O -0.40 -19.72 10.27 -148.98 -1.53 -21.26 16 11 C 0.05 1.83 6.00 71.98 0.43 2.26 16 12 C 0.07 1.91 5.34 86.30 0.46 2.37 16 13 N -0.56 -14.96 4.54 -896.38 -4.07 -19.03 16 14 C 0.05 1.17 5.30 86.32 0.46 1.63 16 15 C -0.11 -2.59 5.62 30.64 0.17 -2.42 16 16 C 0.08 1.61 3.11 30.67 0.10 1.70 16 17 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 18 O -0.57 -12.06 13.24 -148.98 -1.97 -14.04 16 19 C 0.25 6.00 1.84 30.65 0.06 6.06 16 20 F -0.21 -7.03 16.51 44.97 0.74 -6.29 16 21 F -0.20 -4.38 16.78 44.97 0.75 -3.63 16 22 C 0.02 0.50 4.95 86.33 0.43 0.93 16 23 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 24 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 25 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.04 1.49 6.22 -2.38 -0.01 1.47 16 28 H 0.08 2.15 7.99 -2.38 -0.02 2.13 16 29 H 0.09 1.51 8.12 -2.39 -0.02 1.49 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 2.07 6.12 -2.39 -0.01 2.05 16 32 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.05 1.69 7.91 -2.39 -0.02 1.67 16 34 H 0.40 5.34 8.82 -74.06 -0.65 4.69 16 35 H 0.10 2.13 8.02 -2.39 -0.02 2.11 16 36 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -75.29 304.54 -0.12 -75.41 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 0.43 Total: 4.75 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 3.21 Total: -7.42 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -3.79 Total: -75.42 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -3.50 Total: -35.29 kcal Atomic # 9 Polarization: -11.42 SS G_CDS: 1.50 Total: -9.92 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -75.29 -0.12 -75.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595662636.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.428 kcal (2) G-P(sol) polarization free energy of solvation -75.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds