Wall clock time and date at job start Mon Mar 30 2020 04:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.50696 * 109.47026 * 119.99597 * 2 1 3 5 5 H 1.08003 * 120.00190 * 120.00098 * 4 2 1 6 6 C 1.37879 * 120.00311 * 300.00493 * 4 2 1 7 7 N 1.31516 * 120.00450 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99637 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47095 * 90.00407 * 8 6 4 10 10 H 1.48500 * 109.46983 * 210.00072 * 8 6 4 11 11 H 1.48499 * 109.47234 * 330.00272 * 8 6 4 12 12 N 1.46498 * 109.47221 * 239.99959 * 2 1 3 13 13 C 1.34774 * 120.00339 * 84.99884 * 12 2 1 14 14 O 1.21680 * 119.99871 * 355.12236 * 13 12 2 15 15 C 1.46762 * 120.00207 * 175.12237 * 13 12 2 16 16 C 1.36946 * 126.94016 * 185.93849 * 15 13 12 17 17 N 1.33566 * 107.86473 * 179.97438 * 16 15 13 18 18 C 1.30240 * 109.65287 * 359.97438 * 17 16 15 19 19 N 1.35179 * 108.97144 * 359.81419 * 18 17 16 20 20 C 1.46513 * 123.69714 * 179.55299 * 19 18 17 21 21 C 1.53484 * 108.18265 * 344.25204 * 20 19 18 22 22 O 1.43043 * 109.60831 * 47.93559 * 21 20 19 23 23 C 1.43426 * 114.05529 * 290.03767 * 22 21 20 24 24 H 1.08994 * 109.47695 * 300.00206 * 1 2 3 25 25 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47249 * 60.00449 * 1 2 3 27 27 H 0.96994 * 120.00202 * 179.97438 * 7 6 4 28 28 H 0.97003 * 119.99744 * 265.00159 * 12 2 1 29 29 H 1.08003 * 126.06270 * 359.95077 * 16 15 13 30 30 H 1.09001 * 109.87957 * 224.47561 * 20 19 18 31 31 H 1.08998 * 109.56174 * 103.84206 * 20 19 18 32 32 H 1.08999 * 109.44339 * 287.89284 * 21 20 19 33 33 H 1.08995 * 109.42467 * 167.96316 * 21 20 19 34 34 H 1.09002 * 109.79041 * 290.05164 * 23 22 21 35 35 H 1.09001 * 109.83580 * 169.24178 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 2.1379 -0.8589 3.5567 8 14 0.6257 1.2799 2.6540 9 1 -0.8022 0.8745 2.6992 10 1 0.9769 1.9955 3.9069 11 1 0.8490 2.1773 1.4921 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.7748 1.1375 -2.4354 15 6 2.7363 -0.6803 -3.5270 16 6 3.0373 -0.1056 -4.7331 17 7 3.5563 -1.0521 -5.5197 18 6 3.5975 -2.1832 -4.8754 19 7 3.1021 -1.9986 -3.6313 20 6 2.9898 -3.0663 -2.6344 21 6 3.1363 -4.4129 -3.3562 22 8 4.2728 -4.3712 -4.2239 23 6 4.1057 -3.5192 -5.3656 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 -0.8900 27 1 1.9039 -0.5272 4.4376 28 1 2.2491 -1.6318 -1.1525 29 1 2.8820 0.9291 -5.0007 30 1 2.0174 -3.0153 -2.1445 31 1 3.7815 -2.9582 -1.8930 32 1 2.2389 -4.6097 -3.9426 33 1 3.2704 -5.2058 -2.6205 34 1 3.3827 -3.9597 -6.0522 35 1 5.0621 -3.3871 -5.8716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597000395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:56 Heat of formation + Delta-G solvation = -5.945978 kcal Electronic energy + Delta-G solvation = -20356.076477 eV Core-core repulsion = 17162.886095 eV Total energy + Delta-G solvation = -3193.190382 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.56172 -39.01858 -38.44146 -35.29307 -34.38465 -32.44035 -30.93144 -30.30317 -29.59222 -26.30120 -25.30125 -24.25182 -23.05556 -20.81848 -20.20393 -19.74476 -18.13337 -17.28594 -16.63290 -16.11814 -15.70848 -15.61310 -15.39189 -15.13023 -14.41919 -14.18414 -14.03528 -13.60968 -13.09619 -13.06270 -12.90437 -12.28906 -12.14922 -11.90920 -11.60574 -11.39813 -10.91637 -10.59287 -10.30653 -10.23136 -9.86231 -9.77627 -9.45286 -9.35687 -8.87340 -8.57416 -8.25732 -6.30847 -4.34843 1.37492 2.32071 2.78858 3.16977 3.28383 3.29870 3.33869 3.61533 3.70729 3.87043 4.10647 4.23428 4.52024 4.68563 4.72354 4.93146 5.04147 5.11484 5.22365 5.24744 5.34952 5.59250 5.93683 6.19305 6.27730 6.36700 6.44033 6.58734 6.74550 6.86398 7.03138 7.11590 7.37263 7.81294 8.00240 8.33125 8.59942 8.69361 9.29010 10.80987 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.028182 B = 0.005570 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.318671 B = 5025.940895 C = 5769.049613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.237 3.763 3 H 0.051 0.949 4 C -0.540 4.540 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.890 5.890 8 Si 0.886 3.114 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.261 1.261 12 N -0.702 5.702 13 C 0.582 3.418 14 O -0.536 6.536 15 C -0.061 4.061 16 C 0.051 3.949 17 N -0.481 5.481 18 C 0.178 3.822 19 N -0.437 5.437 20 C 0.053 3.947 21 C 0.051 3.949 22 O -0.370 6.370 23 C 0.150 3.850 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.039 0.961 27 H 0.269 0.731 28 H 0.389 0.611 29 H 0.186 0.814 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.126 0.874 34 H 0.086 0.914 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.048 -8.048 -14.259 16.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.134 3.866 3 H 0.069 0.931 4 C -0.577 4.577 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.186 1.186 12 N -0.352 5.352 13 C 0.366 3.634 14 O -0.413 6.413 15 C -0.177 4.177 16 C -0.103 4.103 17 N -0.201 5.201 18 C -0.085 4.085 19 N -0.122 5.122 20 C -0.069 4.069 21 C -0.026 4.026 22 O -0.287 6.287 23 C 0.072 3.928 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.225 0.775 29 H 0.203 0.797 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.087 0.913 33 H 0.144 0.856 34 H 0.104 0.896 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.206 -7.333 -14.640 16.418 hybrid contribution -1.035 0.424 1.249 1.677 sum 0.170 -6.909 -13.391 15.069 Atomic orbital electron populations 1.22452 0.99009 1.00887 0.99655 1.19187 0.90405 0.94724 0.82328 0.93108 1.20968 1.33672 1.14599 0.88506 0.90359 1.24815 0.95392 0.96721 0.95427 1.69855 1.44580 1.40054 0.98112 0.86868 0.80497 0.83510 0.77628 1.20185 1.21990 1.18568 1.46446 1.65208 1.13653 1.09926 1.16896 0.78878 0.86053 0.81565 1.90806 1.50406 1.16481 1.83629 1.21435 1.12278 0.84023 0.99954 1.22678 0.99787 0.99440 0.88350 1.69797 1.20167 0.98139 1.31968 1.24067 1.02927 0.98291 0.83191 1.45268 1.45568 1.08367 1.12981 1.23037 1.05633 0.86352 0.91899 1.23024 0.89939 0.95494 0.94188 1.88175 1.38679 1.65420 1.36383 1.21287 1.03175 0.80821 0.87561 0.93215 0.92899 0.94227 0.92130 0.77543 0.79717 0.87265 0.87431 0.91276 0.85581 0.89575 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 8.96 37.16 0.33 -3.21 16 2 C 0.24 5.56 2.11 -69.08 -0.15 5.41 16 3 H 0.05 1.32 6.71 -51.93 -0.35 0.97 16 4 C -0.54 -14.17 9.31 -34.44 -0.32 -14.49 16 5 H 0.08 2.14 7.98 -52.48 -0.42 1.72 16 6 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -25.65 13.96 55.43 0.77 -24.87 16 8 Si 0.89 21.28 24.37 -169.99 -4.14 17.14 16 9 H -0.28 -6.38 6.87 56.52 0.39 -5.99 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.26 -6.25 6.53 56.52 0.37 -5.88 16 12 N -0.70 -14.00 5.06 -56.22 -0.28 -14.28 16 13 C 0.58 11.60 7.74 -12.82 -0.10 11.50 16 14 O -0.54 -12.27 16.59 5.21 0.09 -12.19 16 15 C -0.06 -1.03 6.95 -82.49 -0.57 -1.60 16 16 C 0.05 0.82 11.68 -17.27 -0.20 0.62 16 17 N -0.48 -7.38 11.19 -10.29 -0.12 -7.49 16 18 C 0.18 2.37 7.78 -155.31 -1.21 1.16 16 19 N -0.44 -6.14 3.16 -109.65 -0.35 -6.49 16 20 C 0.05 0.58 5.59 -3.78 -0.02 0.56 16 21 C 0.05 0.41 6.83 37.41 0.26 0.66 16 22 O -0.37 -3.60 10.79 -35.23 -0.38 -3.98 16 23 C 0.15 1.38 7.29 36.21 0.26 1.64 16 24 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.04 0.83 8.10 -51.93 -0.42 0.40 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.39 6.72 4.74 -40.82 -0.19 6.53 16 29 H 0.19 2.73 8.06 -52.48 -0.42 2.31 16 30 H 0.11 1.13 6.72 -51.93 -0.35 0.79 16 31 H 0.11 1.20 8.06 -51.93 -0.42 0.78 16 32 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 33 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 287.94 15.07 4.34 4.34 Total: -1.00 -32.91 287.94 -5.92 -38.83 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -4.03 Total: 4.63 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -1.81 Total: 4.36 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.03 Total: -53.14 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.29 Total: -16.17 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.14 Total: 17.14 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.91 -5.92 -38.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597000395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.884 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds