Wall clock time and date at job start Mon Mar 30 2020 04:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.50696 * 109.47026 * 119.99597 * 2 1 3 5 5 H 1.08003 * 120.00190 * 120.00098 * 4 2 1 6 6 C 1.37879 * 120.00311 * 300.00493 * 4 2 1 7 7 N 1.31516 * 120.00450 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99637 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47095 * 90.00407 * 8 6 4 10 10 H 1.48500 * 109.46983 * 210.00072 * 8 6 4 11 11 H 1.48499 * 109.47234 * 330.00272 * 8 6 4 12 12 N 1.46498 * 109.47221 * 239.99959 * 2 1 3 13 13 C 1.34774 * 120.00339 * 84.99884 * 12 2 1 14 14 O 1.21680 * 119.99871 * 355.12236 * 13 12 2 15 15 C 1.46762 * 120.00207 * 175.12237 * 13 12 2 16 16 C 1.36946 * 126.94016 * 185.93849 * 15 13 12 17 17 N 1.33566 * 107.86473 * 179.97438 * 16 15 13 18 18 C 1.30240 * 109.65287 * 359.97438 * 17 16 15 19 19 N 1.35179 * 108.97144 * 359.81419 * 18 17 16 20 20 C 1.46513 * 123.69714 * 179.55299 * 19 18 17 21 21 C 1.53484 * 108.18265 * 344.25204 * 20 19 18 22 22 O 1.43043 * 109.60831 * 47.93559 * 21 20 19 23 23 C 1.43426 * 114.05529 * 290.03767 * 22 21 20 24 24 H 1.08994 * 109.47695 * 300.00206 * 1 2 3 25 25 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47249 * 60.00449 * 1 2 3 27 27 H 0.96994 * 120.00202 * 179.97438 * 7 6 4 28 28 H 0.97003 * 119.99744 * 265.00159 * 12 2 1 29 29 H 1.08003 * 126.06270 * 359.95077 * 16 15 13 30 30 H 1.09001 * 109.87957 * 224.47561 * 20 19 18 31 31 H 1.08998 * 109.56174 * 103.84206 * 20 19 18 32 32 H 1.08999 * 109.44339 * 287.89284 * 21 20 19 33 33 H 1.08995 * 109.42467 * 167.96316 * 21 20 19 34 34 H 1.09002 * 109.79041 * 290.05164 * 23 22 21 35 35 H 1.09001 * 109.83580 * 169.24178 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 2.1379 -0.8589 3.5567 8 14 0.6257 1.2799 2.6540 9 1 -0.8022 0.8745 2.6992 10 1 0.9769 1.9955 3.9069 11 1 0.8490 2.1773 1.4921 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.7748 1.1375 -2.4354 15 6 2.7363 -0.6803 -3.5270 16 6 3.0373 -0.1056 -4.7331 17 7 3.5563 -1.0521 -5.5197 18 6 3.5975 -2.1832 -4.8754 19 7 3.1021 -1.9986 -3.6313 20 6 2.9898 -3.0663 -2.6344 21 6 3.1363 -4.4129 -3.3562 22 8 4.2728 -4.3712 -4.2239 23 6 4.1057 -3.5192 -5.3656 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 -0.8900 27 1 1.9039 -0.5272 4.4376 28 1 2.2491 -1.6318 -1.1525 29 1 2.8820 0.9291 -5.0007 30 1 2.0174 -3.0153 -2.1445 31 1 3.7815 -2.9582 -1.8930 32 1 2.2389 -4.6097 -3.9426 33 1 3.2704 -5.2058 -2.6205 34 1 3.3827 -3.9597 -6.0522 35 1 5.0621 -3.3871 -5.8716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597000395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:53 Heat of formation + Delta-G solvation = -31.022388 kcal Electronic energy + Delta-G solvation = -20357.163871 eV Core-core repulsion = 17162.886095 eV Total energy + Delta-G solvation = -3194.277776 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.68081 -40.56199 -39.30806 -37.02825 -35.53593 -34.35354 -32.31873 -31.43663 -30.84081 -27.34533 -27.23037 -25.19566 -24.45729 -22.31134 -21.73126 -20.88845 -19.45044 -18.56004 -17.96167 -17.59136 -17.19107 -16.70758 -16.34887 -16.26326 -15.99972 -15.54857 -15.24975 -14.95536 -14.89567 -14.36801 -14.18226 -13.85450 -13.66400 -13.31957 -12.90393 -12.83923 -12.31305 -12.18748 -11.77019 -11.60181 -11.37991 -11.19567 -11.08376 -10.91454 -10.82507 -10.18207 -9.60461 -8.42480 -6.49647 0.11439 1.25726 1.29530 1.34893 1.43599 1.60155 2.10876 2.21775 2.23551 2.61603 2.93764 2.96368 3.26507 3.47901 3.81268 3.87807 4.07263 4.27891 4.32104 4.38204 4.48869 4.50494 4.56889 4.61532 4.67973 4.82794 4.92644 5.19780 5.30818 5.32375 5.45896 5.70446 5.87653 6.04290 6.46554 6.58247 6.73230 7.03567 7.20928 8.72178 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.028182 B = 0.005570 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.318671 B = 5025.940895 C = 5769.049613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.241 3.759 3 H 0.025 0.975 4 C -0.537 4.537 5 H 0.059 0.941 6 C 0.035 3.965 7 N -0.928 5.928 8 Si 0.935 3.065 9 H -0.257 1.257 10 H -0.291 1.291 11 H -0.263 1.263 12 N -0.699 5.699 13 C 0.585 3.415 14 O -0.572 6.572 15 C -0.090 4.090 16 C 0.052 3.948 17 N -0.501 5.501 18 C 0.193 3.807 19 N -0.438 5.438 20 C 0.043 3.957 21 C 0.055 3.945 22 O -0.378 6.378 23 C 0.149 3.851 24 H 0.045 0.955 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.272 0.728 28 H 0.401 0.599 29 H 0.190 0.810 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.153 0.847 34 H 0.117 0.883 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 -9.424 -15.654 18.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.137 3.863 3 H 0.043 0.957 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.166 4.166 7 N -0.567 5.567 8 Si 0.763 3.237 9 H -0.182 1.182 10 H -0.219 1.219 11 H -0.188 1.188 12 N -0.350 5.350 13 C 0.372 3.628 14 O -0.452 6.452 15 C -0.206 4.206 16 C -0.102 4.102 17 N -0.220 5.220 18 C -0.070 4.070 19 N -0.122 5.122 20 C -0.079 4.079 21 C -0.022 4.022 22 O -0.295 6.295 23 C 0.072 3.928 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.239 0.761 29 H 0.207 0.793 30 H 0.130 0.870 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.170 0.830 34 H 0.135 0.865 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.777 -8.755 -16.038 18.288 hybrid contribution -0.799 0.758 1.604 1.945 sum -0.022 -7.997 -14.434 16.501 Atomic orbital electron populations 1.22349 0.97364 1.01934 0.99752 1.18892 0.91623 0.93242 0.82583 0.95696 1.21148 1.32831 1.13849 0.89660 0.92305 1.25493 0.96657 0.99179 0.95255 1.69950 1.46255 1.41764 0.98695 0.86055 0.79968 0.80414 0.77304 1.18242 1.21866 1.18813 1.46256 1.65382 1.14225 1.09154 1.17168 0.78074 0.85615 0.81992 1.90771 1.52006 1.18058 1.84358 1.20948 1.14788 0.85772 0.99118 1.22897 0.98980 1.00068 0.88239 1.69843 1.21201 0.98703 1.32284 1.25030 1.00283 0.99269 0.82428 1.45432 1.45101 1.07806 1.13874 1.23345 1.05560 0.87118 0.91864 1.23219 0.90313 0.94023 0.94634 1.88181 1.39600 1.65005 1.36685 1.21691 1.04829 0.78528 0.87802 0.93685 0.91383 0.93474 0.91877 0.76074 0.79259 0.86984 0.88088 0.89403 0.82976 0.86504 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.64 8.96 71.98 0.65 -6.00 16 2 C 0.24 11.32 2.11 44.25 0.09 11.41 16 3 H 0.03 1.31 6.71 -2.38 -0.02 1.30 16 4 C -0.54 -28.40 9.31 25.60 0.24 -28.17 16 5 H 0.06 3.27 7.98 -2.91 -0.02 3.25 16 6 C 0.03 1.91 5.45 84.65 0.46 2.37 16 7 N -0.93 -53.96 13.96 21.45 0.30 -53.66 16 8 Si 0.94 43.55 24.37 68.60 1.67 45.22 16 9 H -0.26 -11.16 6.87 99.48 0.68 -10.47 16 10 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 11 H -0.26 -12.29 6.53 99.48 0.65 -11.64 16 12 N -0.70 -27.89 5.06 -450.00 -2.27 -30.17 16 13 C 0.58 23.47 7.74 86.47 0.67 24.14 16 14 O -0.57 -26.60 16.59 -4.28 -0.07 -26.67 16 15 C -0.09 -3.04 6.95 40.23 0.28 -2.76 16 16 C 0.05 1.67 11.68 84.13 0.98 2.65 16 17 N -0.50 -14.60 11.19 -186.48 -2.09 -16.69 16 18 C 0.19 4.72 7.78 138.29 1.08 5.80 16 19 N -0.44 -11.69 3.16 -500.83 -1.58 -13.27 16 20 C 0.04 0.86 5.59 86.54 0.48 1.34 16 21 C 0.05 0.70 6.83 72.14 0.49 1.19 16 22 O -0.38 -6.03 10.79 -148.98 -1.61 -7.64 16 23 C 0.15 2.21 7.29 71.37 0.52 2.73 16 24 H 0.04 1.95 3.27 -2.39 -0.01 1.94 16 25 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 26 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 27 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 28 H 0.40 13.80 4.74 -92.71 -0.44 13.36 16 29 H 0.19 5.63 8.06 -2.91 -0.02 5.61 16 30 H 0.11 2.17 6.72 -2.39 -0.02 2.15 16 31 H 0.10 2.16 8.06 -2.39 -0.02 2.14 16 32 H 0.09 0.84 8.10 -2.39 -0.02 0.82 16 33 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -70.81 287.94 0.90 -69.92 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.61 Total: 18.24 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 5.94 Total: 14.71 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -5.65 Total: -113.78 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -1.68 Total: -34.31 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.67 Total: 45.22 kcal Total: -70.81 0.90 -69.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597000395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.893 kcal (2) G-P(sol) polarization free energy of solvation -70.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds