Wall clock time and date at job start Mon Mar 30 2020 05:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37101 * 119.99701 * 2 1 4 4 H 1.08000 * 120.00279 * 181.75378 * 3 2 1 5 5 C 1.38955 * 120.00078 * 2.03168 * 3 2 1 6 6 N 1.31413 * 119.99582 * 11.44880 * 5 3 2 7 7 Si 1.86797 * 120.00058 * 191.45197 * 5 3 2 8 8 H 1.48500 * 109.47449 * 59.99639 * 7 5 3 9 9 H 1.48499 * 109.46908 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46936 * 299.99697 * 7 5 3 11 11 C 1.34773 * 120.00187 * 180.02562 * 2 1 3 12 12 O 1.21291 * 119.99634 * 184.97498 * 11 2 1 13 13 C 1.50695 * 120.00091 * 4.97156 * 11 2 1 14 14 H 1.09004 * 110.01637 * 320.80745 * 13 11 2 15 15 C 1.53778 * 110.03983 * 82.21699 * 13 11 2 16 16 C 1.52663 * 110.22186 * 172.40029 * 15 13 11 17 17 N 1.46656 * 111.56008 * 298.70235 * 16 15 13 18 18 C 1.30422 * 119.11714 * 34.84442 * 17 16 15 19 19 C 1.48163 * 122.27150 * 356.39312 * 18 17 16 20 20 N 1.28320 * 108.45481 * 178.69760 * 19 18 17 21 21 N 1.40207 * 109.70270 * 0.48491 * 20 19 18 22 22 N 1.37186 * 131.16562 * 177.26582 * 18 17 16 23 23 C 1.46500 * 126.72612 * 1.84592 * 22 18 17 24 24 H 1.09000 * 109.47179 * 54.55500 * 1 2 3 25 25 H 1.09005 * 109.46745 * 174.55252 * 1 2 3 26 26 H 1.08993 * 109.47684 * 294.55212 * 1 2 3 27 27 H 0.97004 * 119.99273 * 180.02562 * 6 5 3 28 28 H 1.08999 * 109.34368 * 292.63432 * 15 13 11 29 29 H 1.08999 * 109.34174 * 52.32271 * 15 13 11 30 30 H 1.09009 * 109.05719 * 59.23386 * 16 15 13 31 31 H 1.09000 * 109.06165 * 178.23046 * 16 15 13 32 32 H 0.97005 * 125.66832 * 181.12266 * 21 20 19 33 33 H 1.08999 * 109.47504 * 90.00244 * 23 22 18 34 34 H 1.09005 * 109.47419 * 210.00217 * 23 22 18 35 35 H 1.08998 * 109.47170 * 330.00304 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.2301 1.1877 -0.0286 5 6 1.4563 2.3903 0.0427 6 7 0.1693 2.3972 0.3084 7 14 2.3524 3.9977 -0.2778 8 1 2.9428 3.9723 -1.6401 9 1 1.3943 5.1276 -0.1750 10 1 3.4325 4.1709 0.7266 11 6 2.1389 -1.1671 -0.0005 12 8 3.3484 -1.1690 0.0906 13 6 1.3897 -2.4697 -0.1142 14 1 0.4695 -2.4230 0.4682 15 6 1.0661 -2.7646 -1.5883 16 6 0.4768 -4.1658 -1.7292 17 7 1.4218 -5.1951 -1.2839 18 6 2.2166 -4.9365 -0.2827 19 6 2.2548 -3.6093 0.3747 20 7 3.1029 -3.6566 1.3365 21 7 3.6785 -4.9336 1.3967 22 7 3.1438 -5.7176 0.3593 23 6 3.5062 -7.0980 0.0285 24 1 -0.3633 0.5960 -0.8372 25 1 -0.3633 -1.0231 -0.0976 26 1 -0.3634 0.4270 0.9347 27 1 -0.3153 3.2370 0.3378 28 1 0.3465 -2.0318 -1.9535 29 1 1.9799 -2.6985 -2.1788 30 1 -0.4308 -4.2322 -1.1290 31 1 0.2256 -4.3429 -2.7750 32 1 4.3369 -5.2273 2.0459 33 1 4.3263 -7.0963 -0.6895 34 1 3.8172 -7.6191 0.9340 35 1 2.6447 -7.6059 -0.4052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597012553.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:32 Heat of formation + Delta-G solvation = 120.915519 kcal Electronic energy + Delta-G solvation = -20513.099729 eV Core-core repulsion = 17357.703225 eV Total energy + Delta-G solvation = -3155.396503 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.72290 -38.57035 -36.29149 -34.78218 -34.08960 -31.87412 -30.87254 -30.08741 -27.47892 -26.43728 -25.71197 -24.16546 -22.44674 -21.31917 -19.32161 -18.44190 -17.58294 -16.91787 -16.47484 -15.68839 -15.26460 -14.96339 -14.36751 -14.26173 -13.99287 -13.33570 -13.24219 -13.04424 -12.90234 -12.53119 -12.31896 -11.75871 -11.59660 -11.17828 -11.07307 -11.04328 -10.90004 -10.71489 -10.43837 -10.39295 -10.11845 -9.50780 -9.00062 -8.81277 -8.22613 -7.81884 -7.01778 -6.23436 -3.76657 1.72512 1.76110 3.08734 3.19806 3.26037 3.30805 3.51582 3.86749 4.11517 4.33584 4.75312 4.92544 5.08358 5.13414 5.16423 5.28500 5.33536 5.46514 5.48225 5.65415 5.90801 5.97346 6.07582 6.14532 6.24979 6.38380 6.54273 6.89643 7.06842 7.40606 7.59347 7.75770 8.00226 8.08485 8.27723 8.51321 9.21712 9.46642 10.00423 10.72138 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.035320 B = 0.005329 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.566790 B = 5253.450488 C = 5713.435588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.444 5.444 3 C -0.299 4.299 4 H 0.104 0.896 5 C 0.027 3.973 6 N -0.886 5.886 7 Si 0.930 3.070 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.274 1.274 11 C 0.448 3.552 12 O -0.580 6.580 13 C -0.016 4.016 14 H 0.108 0.892 15 C -0.135 4.135 16 C 0.074 3.926 17 N -0.592 5.592 18 C 0.391 3.609 19 C 0.042 3.958 20 N -0.130 5.130 21 N -0.452 5.452 22 N -0.424 5.424 23 C 0.133 3.867 24 H 0.065 0.935 25 H 0.026 0.974 26 H 0.074 0.926 27 H 0.266 0.734 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.456 0.544 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.583 -14.153 -0.654 14.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.162 5.162 3 C -0.427 4.427 4 H 0.121 0.879 5 C -0.175 4.175 6 N -0.527 5.527 7 Si 0.756 3.244 8 H -0.200 1.200 9 H -0.209 1.209 10 H -0.199 1.199 11 C 0.235 3.765 12 O -0.464 6.464 13 C -0.040 4.040 14 H 0.125 0.875 15 C -0.174 4.174 16 C -0.056 4.056 17 N -0.327 5.327 18 C 0.113 3.887 19 C -0.153 4.153 20 N 0.055 4.945 21 N -0.289 5.289 22 N -0.232 5.232 23 C -0.009 4.009 24 H 0.083 0.917 25 H 0.044 0.956 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.310 0.690 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.273 -14.368 -0.321 14.375 hybrid contribution 0.392 1.046 0.082 1.120 sum 0.665 -13.322 -0.240 13.341 Atomic orbital electron populations 1.21847 0.80403 0.96486 1.04608 1.43637 1.05921 1.04598 1.62077 1.19747 0.93165 0.81829 1.47921 0.87860 1.25265 0.95863 0.99553 0.96782 1.70134 1.07756 1.27211 1.47644 0.85942 0.78788 0.80424 0.79212 1.19960 1.20945 1.19902 1.19302 0.87863 0.83780 0.85599 1.90545 1.13863 1.86464 1.55546 1.20011 0.96703 0.90127 0.97177 0.87477 1.22029 1.02854 0.98340 0.94217 1.21872 0.94414 0.88193 1.01151 1.72252 1.13007 1.32578 1.14873 1.20471 0.89906 0.87232 0.91103 1.24272 0.99158 0.95758 0.96085 1.75856 1.05553 0.95731 1.17316 1.49362 1.48207 1.03193 1.28174 1.45859 1.39030 1.10736 1.27610 1.21641 1.02188 0.76262 1.00813 0.91663 0.95597 0.90714 0.92328 0.89344 0.90878 0.91847 0.89528 0.69050 0.92166 0.90767 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.43 8.55 59.85 0.51 2.94 16 2 N -0.44 -11.37 3.03 -122.19 -0.37 -11.74 16 3 C -0.30 -8.35 9.55 -14.93 -0.14 -8.50 16 4 H 0.10 3.05 7.20 -52.49 -0.38 2.67 16 5 C 0.03 0.71 5.37 -17.47 -0.09 0.62 16 6 N -0.89 -23.08 9.64 55.50 0.53 -22.55 16 7 Si 0.93 20.86 29.57 -169.99 -5.03 15.83 16 8 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 C 0.45 11.07 6.80 -10.99 -0.07 11.00 16 12 O -0.58 -16.47 15.34 5.55 0.09 -16.38 16 13 C -0.02 -0.31 2.06 -92.28 -0.19 -0.50 16 14 H 0.11 1.89 6.47 -51.93 -0.34 1.56 16 15 C -0.13 -2.26 5.15 -26.50 -0.14 -2.40 16 16 C 0.07 1.09 6.93 -4.13 -0.03 1.06 16 17 N -0.59 -9.85 11.06 -58.63 -0.65 -10.50 16 18 C 0.39 6.81 7.92 -154.69 -1.22 5.58 16 19 C 0.04 0.83 6.32 -79.74 -0.50 0.32 16 20 N -0.13 -2.57 11.82 35.19 0.42 -2.15 16 21 N -0.45 -6.83 8.64 60.35 0.52 -6.31 16 22 N -0.42 -6.18 4.12 -65.39 -0.27 -6.45 16 23 C 0.13 1.23 11.55 59.85 0.69 1.93 16 24 H 0.06 1.50 7.19 -51.93 -0.37 1.13 16 25 H 0.03 0.46 4.93 -51.93 -0.26 0.21 16 26 H 0.07 1.77 6.97 -51.93 -0.36 1.41 16 27 H 0.27 6.60 8.31 -40.82 -0.34 6.27 16 28 H 0.09 1.36 7.54 -51.93 -0.39 0.97 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.46 5.05 8.96 -323.91 -2.90 2.15 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 291.16 15.07 4.39 4.39 Total: -1.00 -33.92 291.16 -8.23 -42.16 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.67 Total: 1.65 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: -1.19 Total: 12.06 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.18 Total: -59.71 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: 0.09 Total: -16.38 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.92 -8.23 -42.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597012553.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.073 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds