Wall clock time and date at job start Mon Mar 30 2020 05:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37101 * 119.99701 * 2 1 4 4 H 1.08000 * 120.00279 * 181.75378 * 3 2 1 5 5 C 1.38955 * 120.00078 * 2.03168 * 3 2 1 6 6 N 1.31413 * 119.99582 * 11.44880 * 5 3 2 7 7 Si 1.86797 * 120.00058 * 191.45197 * 5 3 2 8 8 H 1.48500 * 109.47449 * 59.99639 * 7 5 3 9 9 H 1.48499 * 109.46908 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46936 * 299.99697 * 7 5 3 11 11 C 1.34773 * 120.00187 * 180.02562 * 2 1 3 12 12 O 1.21291 * 119.99634 * 184.97498 * 11 2 1 13 13 C 1.50695 * 120.00091 * 4.97156 * 11 2 1 14 14 H 1.09004 * 110.01637 * 320.80745 * 13 11 2 15 15 C 1.53778 * 110.03983 * 82.21699 * 13 11 2 16 16 C 1.52663 * 110.22186 * 172.40029 * 15 13 11 17 17 N 1.46656 * 111.56008 * 298.70235 * 16 15 13 18 18 C 1.30422 * 119.11714 * 34.84442 * 17 16 15 19 19 C 1.48163 * 122.27150 * 356.39312 * 18 17 16 20 20 N 1.28320 * 108.45481 * 178.69760 * 19 18 17 21 21 N 1.40207 * 109.70270 * 0.48491 * 20 19 18 22 22 N 1.37186 * 131.16562 * 177.26582 * 18 17 16 23 23 C 1.46500 * 126.72612 * 1.84592 * 22 18 17 24 24 H 1.09000 * 109.47179 * 54.55500 * 1 2 3 25 25 H 1.09005 * 109.46745 * 174.55252 * 1 2 3 26 26 H 1.08993 * 109.47684 * 294.55212 * 1 2 3 27 27 H 0.97004 * 119.99273 * 180.02562 * 6 5 3 28 28 H 1.08999 * 109.34368 * 292.63432 * 15 13 11 29 29 H 1.08999 * 109.34174 * 52.32271 * 15 13 11 30 30 H 1.09009 * 109.05719 * 59.23386 * 16 15 13 31 31 H 1.09000 * 109.06165 * 178.23046 * 16 15 13 32 32 H 0.97005 * 125.66832 * 181.12266 * 21 20 19 33 33 H 1.08999 * 109.47504 * 90.00244 * 23 22 18 34 34 H 1.09005 * 109.47419 * 210.00217 * 23 22 18 35 35 H 1.08998 * 109.47170 * 330.00304 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.2301 1.1877 -0.0286 5 6 1.4563 2.3903 0.0427 6 7 0.1693 2.3972 0.3084 7 14 2.3524 3.9977 -0.2778 8 1 2.9428 3.9723 -1.6401 9 1 1.3943 5.1276 -0.1750 10 1 3.4325 4.1709 0.7266 11 6 2.1389 -1.1671 -0.0005 12 8 3.3484 -1.1690 0.0906 13 6 1.3897 -2.4697 -0.1142 14 1 0.4695 -2.4230 0.4682 15 6 1.0661 -2.7646 -1.5883 16 6 0.4768 -4.1658 -1.7292 17 7 1.4218 -5.1951 -1.2839 18 6 2.2166 -4.9365 -0.2827 19 6 2.2548 -3.6093 0.3747 20 7 3.1029 -3.6566 1.3365 21 7 3.6785 -4.9336 1.3967 22 7 3.1438 -5.7176 0.3593 23 6 3.5062 -7.0980 0.0285 24 1 -0.3633 0.5960 -0.8372 25 1 -0.3633 -1.0231 -0.0976 26 1 -0.3634 0.4270 0.9347 27 1 -0.3153 3.2370 0.3378 28 1 0.3465 -2.0318 -1.9535 29 1 1.9799 -2.6985 -2.1788 30 1 -0.4308 -4.2322 -1.1290 31 1 0.2256 -4.3429 -2.7750 32 1 4.3369 -5.2273 2.0459 33 1 4.3263 -7.0963 -0.6895 34 1 3.8172 -7.6191 0.9340 35 1 2.6447 -7.6059 -0.4052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597012553.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:32 Heat of formation + Delta-G solvation = 95.164446 kcal Electronic energy + Delta-G solvation = -20514.216379 eV Core-core repulsion = 17357.703225 eV Total energy + Delta-G solvation = -3156.513153 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.05048 -40.35756 -37.65774 -36.70408 -35.38929 -33.72567 -32.38141 -31.35134 -28.67019 -28.14796 -27.15881 -25.98807 -23.72833 -22.83659 -20.71002 -19.93938 -18.92341 -18.83847 -18.19742 -16.98924 -16.76208 -16.30882 -16.00839 -15.90417 -15.72006 -14.83601 -14.57529 -14.40061 -13.94254 -13.89675 -13.61401 -13.51847 -13.39823 -12.88067 -12.66730 -12.47261 -12.43195 -12.37385 -12.18684 -12.05769 -11.60042 -11.00045 -10.80614 -10.39354 -9.87162 -9.82436 -8.24801 -8.18121 -5.86746 0.41063 0.66203 1.38912 1.42010 1.52095 1.74819 1.97518 2.27114 2.33291 2.89156 3.10417 3.30065 3.65384 3.84932 3.95413 4.01925 4.18953 4.36334 4.50194 4.51357 4.63155 4.71012 4.77240 4.84005 4.94465 5.08262 5.19667 5.22696 5.47369 5.55199 5.70868 6.05805 6.50262 6.63137 6.73119 7.10548 7.19044 7.50085 8.04492 8.68548 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.035320 B = 0.005329 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.566790 B = 5253.450488 C = 5713.435588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.457 5.457 3 C -0.342 4.342 4 H 0.073 0.927 5 C 0.000 4.000 6 N -0.892 5.892 7 Si 0.989 3.011 8 H -0.273 1.273 9 H -0.267 1.267 10 H -0.277 1.277 11 C 0.441 3.559 12 O -0.627 6.627 13 C -0.009 4.009 14 H 0.126 0.874 15 C -0.125 4.125 16 C 0.076 3.924 17 N -0.598 5.598 18 C 0.379 3.621 19 C 0.015 3.985 20 N -0.167 5.167 21 N -0.436 5.436 22 N -0.418 5.418 23 C 0.123 3.877 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.273 0.727 28 H 0.103 0.897 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.471 0.529 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.555 -15.403 -1.049 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.175 5.175 3 C -0.469 4.469 4 H 0.091 0.909 5 C -0.202 4.202 6 N -0.531 5.531 7 Si 0.812 3.188 8 H -0.198 1.198 9 H -0.191 1.191 10 H -0.203 1.203 11 C 0.230 3.770 12 O -0.514 6.514 13 C -0.033 4.033 14 H 0.144 0.856 15 C -0.165 4.165 16 C -0.054 4.054 17 N -0.334 5.334 18 C 0.101 3.899 19 C -0.180 4.180 20 N 0.016 4.984 21 N -0.277 5.277 22 N -0.227 5.227 23 C -0.016 4.016 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.127 0.873 32 H 0.329 0.671 33 H 0.088 0.912 34 H 0.127 0.873 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.722 -15.656 -0.707 15.689 hybrid contribution 0.756 1.374 0.252 1.588 sum 0.034 -14.283 -0.455 14.290 Atomic orbital electron populations 1.21766 0.78496 0.98903 1.03115 1.43871 1.07183 1.04388 1.62066 1.19653 0.92384 0.83822 1.51090 0.90914 1.25957 0.96743 1.01809 0.95658 1.70222 1.08264 1.28281 1.46377 0.85071 0.77903 0.77019 0.78758 1.19812 1.19076 1.20286 1.20210 0.87707 0.85207 0.83906 1.90496 1.16187 1.87485 1.57244 1.19954 0.96691 0.87254 0.99403 0.85614 1.21996 1.02198 1.00515 0.91747 1.22010 0.94467 0.86057 1.02882 1.72251 1.13417 1.33208 1.14515 1.20631 0.91067 0.86769 0.91436 1.24396 0.99781 0.96912 0.96875 1.75739 1.06134 0.98347 1.18138 1.49300 1.47684 1.02237 1.28438 1.46331 1.38097 1.11657 1.26625 1.22064 1.02879 0.73745 1.02879 0.92689 0.91267 0.92492 0.91703 0.87868 0.93416 0.89802 0.87272 0.67147 0.91224 0.87337 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.26 8.55 127.77 1.09 6.35 16 2 N -0.46 -23.94 3.03 -658.90 -1.99 -25.93 16 3 C -0.34 -19.74 9.55 84.04 0.80 -18.93 16 4 H 0.07 4.54 7.20 -2.91 -0.02 4.52 16 5 C 0.00 -0.01 5.37 84.93 0.46 0.44 16 6 N -0.89 -46.16 9.64 21.66 0.21 -45.95 16 7 Si 0.99 42.83 29.57 68.60 2.03 44.86 16 8 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 9 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 C 0.44 22.39 6.80 87.66 0.60 22.99 16 12 O -0.63 -37.20 15.34 -3.06 -0.05 -37.25 16 13 C -0.01 -0.36 2.06 -11.87 -0.02 -0.39 16 14 H 0.13 4.27 6.47 -2.39 -0.02 4.25 16 15 C -0.12 -4.04 5.15 30.74 0.16 -3.88 16 16 C 0.08 2.03 6.93 86.24 0.60 2.63 16 17 N -0.60 -18.63 11.06 -339.39 -3.76 -22.39 16 18 C 0.38 12.68 7.92 136.68 1.08 13.76 16 19 C 0.01 0.57 6.32 45.87 0.29 0.86 16 20 N -0.17 -6.64 11.82 -42.57 -0.50 -7.15 16 21 N -0.44 -12.72 8.64 37.02 0.32 -12.40 16 22 N -0.42 -11.40 4.12 -360.78 -1.49 -12.89 16 23 C 0.12 1.94 11.55 127.77 1.48 3.42 16 24 H 0.05 2.50 7.19 -2.39 -0.02 2.48 16 25 H 0.07 2.38 4.93 -2.38 -0.01 2.37 16 26 H 0.06 2.69 6.97 -2.39 -0.02 2.67 16 27 H 0.27 13.23 8.31 -92.71 -0.77 12.46 16 28 H 0.10 2.98 7.54 -2.39 -0.02 2.96 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.47 9.79 8.96 -333.53 -2.99 6.80 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -75.71 291.16 -0.56 -76.27 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -1.86 Total: 15.58 kcal Atomic # 6 Polarization: 20.71 SS G_CDS: 6.53 Total: 27.24 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -7.21 Total: -126.70 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.05 Total: -37.25 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -75.71 -0.56 -76.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597012553.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.432 kcal (2) G-P(sol) polarization free energy of solvation -75.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds