Wall clock time and date at job start Mon Mar 30 2020 05:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00063 * 2 1 4 4 H 1.48504 * 109.47128 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47566 * 300.00318 * 3 2 1 6 6 H 1.48498 * 109.46965 * 60.00489 * 3 2 1 7 7 C 1.37875 * 119.99648 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00026 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46801 * 180.02562 * 9 7 2 11 11 C 1.46498 * 120.00191 * 90.00559 * 10 9 7 12 12 C 1.53001 * 109.47370 * 89.99461 * 11 10 9 13 13 C 1.53000 * 117.50223 * 185.00345 * 12 11 10 14 14 C 1.52997 * 117.49889 * 116.37606 * 12 11 10 15 15 C 1.34777 * 119.99796 * 270.00246 * 10 9 7 16 16 O 1.21282 * 120.00254 * 0.02562 * 15 10 9 17 17 C 1.50702 * 119.99611 * 180.02562 * 15 10 9 18 18 H 1.08996 * 115.51573 * 325.58321 * 17 15 10 19 19 C 1.53003 * 117.43077 * 110.95444 * 17 15 10 20 20 H 1.08996 * 119.80731 * 355.36583 * 19 17 15 21 21 C 1.54539 * 118.02695 * 198.16636 * 19 17 15 22 22 O 1.44429 * 104.73083 * 273.03956 * 21 19 17 23 23 C 1.44431 * 105.27197 * 40.52909 * 22 21 19 24 24 C 1.53000 * 117.43120 * 180.20877 * 17 15 10 25 25 H 1.09001 * 119.81090 * 5.65273 * 24 17 15 26 26 H 0.97002 * 120.00031 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47073 * 60.00855 * 9 7 2 28 28 H 1.08997 * 109.47484 * 300.00532 * 9 7 2 29 29 H 1.08999 * 109.46877 * 330.00081 * 11 10 9 30 30 H 1.08991 * 109.47398 * 209.99700 * 11 10 9 31 31 H 1.09002 * 115.55911 * 330.69034 * 12 11 10 32 32 H 1.08990 * 117.49990 * 145.01974 * 13 12 11 33 33 H 1.09004 * 117.49237 * 359.97438 * 13 12 11 34 34 H 1.08999 * 117.49685 * 0.02562 * 14 12 11 35 35 H 1.08999 * 117.52022 * 214.97106 * 14 12 11 36 36 H 1.08999 * 110.39187 * 154.24504 * 21 19 17 37 37 H 1.09001 * 110.51626 * 31.90407 * 21 19 17 38 38 H 1.09001 * 110.37365 * 200.65300 * 23 22 21 39 39 H 1.09004 * 110.37043 * 78.31991 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6788 -4.1696 1.2681 12 6 1.7481 -5.3007 1.7098 13 6 2.0083 -5.9368 3.0768 14 6 2.3399 -6.7088 1.7980 15 6 2.6408 -4.1249 -1.1678 16 8 2.2472 -3.6636 -2.2181 17 6 3.6197 -5.2707 -1.1677 18 1 4.3472 -5.2667 -0.3561 19 6 3.1134 -6.6303 -1.6537 20 1 2.0615 -6.7567 -1.9099 21 6 3.9285 -7.8869 -1.2735 22 8 4.9244 -8.0070 -2.3126 23 6 5.3680 -6.6572 -2.5722 24 6 4.0816 -5.8032 -2.5257 25 1 3.7747 -5.2950 -3.4398 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6245 -2.5571 0.8896 29 1 2.6865 -3.3880 2.0278 30 1 3.6882 -4.5596 1.1379 31 1 0.7112 -5.2100 1.3861 32 1 1.1427 -6.2645 3.6523 33 1 2.8430 -5.5496 3.6612 34 1 3.3925 -6.8292 1.5419 35 1 1.6927 -7.5447 1.5327 36 1 3.2857 -8.7671 -1.2606 37 1 4.4068 -7.7529 -0.3032 38 1 5.8310 -6.5927 -3.5568 39 1 6.0670 -6.3327 -1.8013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597142719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:34 Heat of formation + Delta-G solvation = -19.949138 kcal Electronic energy + Delta-G solvation = -20645.468805 eV Core-core repulsion = 17555.211544 eV Total energy + Delta-G solvation = -3090.257261 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.59247 -38.69936 -37.18332 -34.71352 -34.20294 -32.52516 -28.78942 -28.19055 -26.58818 -25.47261 -23.26993 -22.26277 -21.29639 -20.73836 -20.56766 -18.49546 -17.20012 -16.49117 -15.98430 -15.74446 -15.22510 -15.11257 -14.86419 -14.48144 -14.24500 -13.58728 -13.12179 -12.85568 -12.70832 -12.23659 -12.17390 -11.68091 -11.59945 -11.43739 -11.42089 -11.25053 -10.88425 -10.66627 -10.39402 -10.30751 -10.15786 -10.09081 -9.85096 -9.65790 -9.61687 -8.95667 -8.45877 -7.72357 -6.06673 -4.11421 2.93946 3.28350 3.36088 3.39812 3.62871 3.86138 3.93588 3.96079 4.41681 4.53926 4.66591 4.87151 4.91816 4.92240 5.03718 5.10308 5.11737 5.27171 5.27650 5.35145 5.50413 5.57405 5.61631 5.69156 5.70730 5.85949 5.97864 6.03970 6.07876 6.17495 6.19690 6.44900 6.59477 7.03011 7.40404 7.50447 7.89731 8.20369 8.36609 8.86947 9.04440 9.53869 11.01519 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.005841 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.346203 B = 4792.267729 C = 5726.100224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.246 3.754 10 N -0.588 5.588 11 C 0.143 3.857 12 C -0.162 4.162 13 C -0.178 4.178 14 C -0.179 4.179 15 C 0.536 3.464 16 O -0.538 6.538 17 C -0.138 4.138 18 H 0.116 0.884 19 C -0.164 4.164 20 H 0.124 0.876 21 C 0.076 3.924 22 O -0.375 6.375 23 C 0.074 3.926 24 C -0.168 4.168 25 H 0.133 0.867 26 H 0.263 0.737 27 H 0.043 0.957 28 H 0.034 0.966 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.629 -15.043 3.165 17.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.565 4.565 8 H 0.076 0.924 9 C 0.127 3.873 10 N -0.318 5.318 11 C 0.018 3.982 12 C -0.182 4.182 13 C -0.216 4.216 14 C -0.216 4.216 15 C 0.322 3.678 16 O -0.416 6.416 17 C -0.160 4.160 18 H 0.134 0.866 19 C -0.183 4.183 20 H 0.142 0.858 21 C 0.000 4.000 22 O -0.294 6.294 23 C -0.002 4.002 24 C -0.187 4.187 25 H 0.151 0.849 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.117 0.883 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.320 -14.845 2.503 16.740 hybrid contribution 0.236 1.243 0.271 1.294 sum 7.556 -13.602 2.774 15.805 Atomic orbital electron populations 1.69943 1.05998 1.26930 1.50472 1.24933 0.94878 0.99235 0.95041 0.86442 0.79998 0.83373 0.77611 1.19803 1.20861 1.20939 1.21461 0.93384 0.90628 1.51027 0.92401 1.19317 0.87449 0.82067 0.98476 1.48102 1.45378 1.34449 1.03823 1.21034 0.95151 0.94678 0.87298 1.22884 1.01344 0.93952 0.99994 1.22907 1.03342 1.04567 0.90782 1.22994 1.01281 0.95236 1.02075 1.19218 0.81535 0.82727 0.84294 1.90675 1.58201 1.61548 1.31132 1.22495 1.01284 0.93976 0.98198 0.86588 1.24041 1.00292 0.89666 1.04309 0.85802 1.22936 0.89408 0.96718 0.90967 1.89161 1.57004 1.26431 1.56835 1.22940 0.94212 0.81019 1.02074 1.24138 0.95868 1.02350 0.96323 0.84901 0.92752 0.93892 0.94813 0.89522 0.91495 0.87502 0.89036 0.88841 0.89149 0.89215 0.88455 0.91874 0.88301 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.53 -14.82 9.39 -34.44 -0.32 -15.15 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.25 6.36 5.16 -5.19 -0.03 6.33 16 10 N -0.59 -12.20 2.46 -175.06 -0.43 -12.63 16 11 C 0.14 2.27 5.52 -4.04 -0.02 2.25 16 12 C -0.16 -2.20 6.01 -90.62 -0.54 -2.75 16 13 C -0.18 -1.94 10.25 -26.73 -0.27 -2.21 16 14 C -0.18 -1.89 10.18 -26.73 -0.27 -2.16 16 15 C 0.54 11.08 7.45 -10.98 -0.08 11.00 16 16 O -0.54 -13.55 15.92 5.56 0.09 -13.47 16 17 C -0.14 -2.08 4.84 -91.77 -0.44 -2.52 16 18 H 0.12 1.51 6.44 -51.93 -0.33 1.18 16 19 C -0.16 -2.13 6.91 -89.11 -0.62 -2.75 16 20 H 0.12 1.70 8.14 -51.93 -0.42 1.28 16 21 C 0.08 0.81 7.44 37.97 0.28 1.09 16 22 O -0.38 -4.70 11.65 -35.23 -0.41 -5.11 16 23 C 0.07 0.85 7.44 37.93 0.28 1.13 16 24 C -0.17 -2.35 6.64 -89.15 -0.59 -2.94 16 25 H 0.13 2.07 7.82 -51.93 -0.41 1.66 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 28 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 29 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 30 H 0.07 0.91 5.73 -51.93 -0.30 0.61 16 31 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.87 7.65 -51.93 -0.40 0.47 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.59 7.76 -51.93 -0.40 0.19 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 327.08 15.07 4.93 4.93 Total: -1.00 -32.49 327.08 -8.83 -41.32 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.99 Total: 0.98 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -2.73 Total: -7.04 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.31 Total: -38.38 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.32 Total: -18.57 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.49 -8.83 -41.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597142719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.368 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds