Wall clock time and date at job start Mon Mar 30 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00063 * 2 1 4 4 H 1.48504 * 109.47128 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47566 * 300.00318 * 3 2 1 6 6 H 1.48498 * 109.46965 * 60.00489 * 3 2 1 7 7 C 1.37875 * 119.99648 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00026 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46801 * 180.02562 * 9 7 2 11 11 C 1.46498 * 120.00191 * 90.00559 * 10 9 7 12 12 C 1.53001 * 109.47370 * 89.99461 * 11 10 9 13 13 C 1.53000 * 117.50223 * 185.00345 * 12 11 10 14 14 C 1.52997 * 117.49889 * 116.37606 * 12 11 10 15 15 C 1.34777 * 119.99796 * 270.00246 * 10 9 7 16 16 O 1.21282 * 120.00254 * 0.02562 * 15 10 9 17 17 C 1.50702 * 119.99611 * 180.02562 * 15 10 9 18 18 H 1.08996 * 115.51573 * 325.58321 * 17 15 10 19 19 C 1.53003 * 117.43077 * 110.95444 * 17 15 10 20 20 H 1.08996 * 119.80731 * 355.36583 * 19 17 15 21 21 C 1.54539 * 118.02695 * 198.16636 * 19 17 15 22 22 O 1.44429 * 104.73083 * 273.03956 * 21 19 17 23 23 C 1.44431 * 105.27197 * 40.52909 * 22 21 19 24 24 C 1.53000 * 117.43120 * 180.20877 * 17 15 10 25 25 H 1.09001 * 119.81090 * 5.65273 * 24 17 15 26 26 H 0.97002 * 120.00031 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47073 * 60.00855 * 9 7 2 28 28 H 1.08997 * 109.47484 * 300.00532 * 9 7 2 29 29 H 1.08999 * 109.46877 * 330.00081 * 11 10 9 30 30 H 1.08991 * 109.47398 * 209.99700 * 11 10 9 31 31 H 1.09002 * 115.55911 * 330.69034 * 12 11 10 32 32 H 1.08990 * 117.49990 * 145.01974 * 13 12 11 33 33 H 1.09004 * 117.49237 * 359.97438 * 13 12 11 34 34 H 1.08999 * 117.49685 * 0.02562 * 14 12 11 35 35 H 1.08999 * 117.52022 * 214.97106 * 14 12 11 36 36 H 1.08999 * 110.39187 * 154.24504 * 21 19 17 37 37 H 1.09001 * 110.51626 * 31.90407 * 21 19 17 38 38 H 1.09001 * 110.37365 * 200.65300 * 23 22 21 39 39 H 1.09004 * 110.37043 * 78.31991 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6788 -4.1696 1.2681 12 6 1.7481 -5.3007 1.7098 13 6 2.0083 -5.9368 3.0768 14 6 2.3399 -6.7088 1.7980 15 6 2.6408 -4.1249 -1.1678 16 8 2.2472 -3.6636 -2.2181 17 6 3.6197 -5.2707 -1.1677 18 1 4.3472 -5.2667 -0.3561 19 6 3.1134 -6.6303 -1.6537 20 1 2.0615 -6.7567 -1.9099 21 6 3.9285 -7.8869 -1.2735 22 8 4.9244 -8.0070 -2.3126 23 6 5.3680 -6.6572 -2.5722 24 6 4.0816 -5.8032 -2.5257 25 1 3.7747 -5.2950 -3.4398 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6245 -2.5571 0.8896 29 1 2.6865 -3.3880 2.0278 30 1 3.6882 -4.5596 1.1379 31 1 0.7112 -5.2100 1.3861 32 1 1.1427 -6.2645 3.6523 33 1 2.8430 -5.5496 3.6612 34 1 3.3925 -6.8292 1.5419 35 1 1.6927 -7.5447 1.5327 36 1 3.2857 -8.7671 -1.2606 37 1 4.4068 -7.7529 -0.3032 38 1 5.8310 -6.5927 -3.5568 39 1 6.0670 -6.3327 -1.8013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597142719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:33 Heat of formation + Delta-G solvation = -40.433154 kcal Electronic energy + Delta-G solvation = -20646.357059 eV Core-core repulsion = 17555.211544 eV Total energy + Delta-G solvation = -3091.145514 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.77511 -40.08525 -38.36671 -36.24729 -35.48644 -34.58833 -30.10481 -29.66123 -27.90716 -26.95655 -24.93516 -23.14558 -22.62687 -21.86858 -21.60878 -19.92963 -18.68792 -18.49007 -17.42285 -16.93849 -16.55373 -16.26087 -16.06720 -15.86856 -15.65900 -14.79813 -14.66157 -14.36178 -14.04282 -13.68853 -13.54448 -13.24565 -12.95669 -12.77535 -12.60551 -12.55772 -12.49246 -12.26527 -12.22031 -11.74037 -11.39803 -11.27023 -11.20337 -10.90584 -10.67945 -10.60347 -10.53156 -9.49936 -8.25621 -6.40828 1.34465 1.37045 1.47705 1.51834 2.14546 2.37032 2.60591 2.98552 3.04110 3.06494 3.38834 3.60094 3.77234 3.88083 3.90107 3.98878 4.08781 4.12973 4.24983 4.36637 4.44302 4.67587 4.76257 4.79333 4.82573 4.85031 4.90814 4.98004 5.02197 5.08392 5.11884 5.18487 5.35021 5.37660 5.52831 5.74725 5.80158 6.01935 6.65566 6.73494 7.23914 7.41184 8.82018 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.005841 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.346203 B = 4792.267729 C = 5726.100224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.263 3.737 10 N -0.591 5.591 11 C 0.143 3.857 12 C -0.193 4.193 13 C -0.164 4.164 14 C -0.155 4.155 15 C 0.525 3.475 16 O -0.599 6.599 17 C -0.137 4.137 18 H 0.148 0.852 19 C -0.150 4.150 20 H 0.110 0.890 21 C 0.082 3.918 22 O -0.388 6.388 23 C 0.082 3.918 24 C -0.179 4.179 25 H 0.106 0.894 26 H 0.267 0.733 27 H -0.006 1.006 28 H 0.022 0.978 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.286 -16.814 4.703 20.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.072 0.928 9 C 0.142 3.858 10 N -0.320 5.320 11 C 0.020 3.980 12 C -0.213 4.213 13 C -0.201 4.201 14 C -0.192 4.192 15 C 0.314 3.686 16 O -0.481 6.481 17 C -0.158 4.158 18 H 0.165 0.835 19 C -0.169 4.169 20 H 0.128 0.872 21 C 0.006 3.994 22 O -0.307 6.307 23 C 0.006 3.994 24 C -0.198 4.198 25 H 0.124 0.876 26 H 0.076 0.924 27 H 0.012 0.988 28 H 0.040 0.960 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.995 -16.656 4.086 19.850 hybrid contribution -0.678 1.773 -0.223 1.911 sum 9.318 -14.884 3.863 17.980 Atomic orbital electron populations 1.70065 1.07642 1.28164 1.51004 1.25884 0.95810 1.03155 0.94327 0.85337 0.78785 0.78487 0.78022 1.18998 1.20759 1.19266 1.21719 0.93278 0.91861 1.51284 0.92780 1.18723 0.87912 0.83757 0.95440 1.48085 1.44388 1.33342 1.06197 1.21263 0.97220 0.95023 0.84474 1.22585 0.99555 0.95595 1.03536 1.23022 1.03999 1.03055 0.90054 1.23137 1.02385 0.93036 1.00610 1.20221 0.81660 0.83582 0.83095 1.90633 1.60539 1.63747 1.33164 1.22290 1.00671 0.92697 1.00095 0.83501 1.24132 1.00018 0.89939 1.02777 0.87204 1.23113 0.89085 0.95632 0.91559 1.89161 1.57290 1.26640 1.57573 1.23003 0.92748 0.79905 1.03735 1.24203 0.98275 1.02590 0.94703 0.87583 0.92360 0.98770 0.96003 0.90943 0.88221 0.90557 0.88357 0.87402 0.86981 0.88103 0.86446 0.89210 0.87070 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.54 -31.79 9.39 25.60 0.24 -31.55 16 8 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 9 C 0.26 14.53 5.16 85.63 0.44 14.98 16 10 N -0.59 -25.59 2.46 -826.16 -2.03 -27.62 16 11 C 0.14 4.46 5.52 86.38 0.48 4.94 16 12 C -0.19 -5.09 6.01 -10.79 -0.06 -5.15 16 13 C -0.16 -3.09 10.25 30.60 0.31 -2.78 16 14 C -0.15 -2.70 10.18 30.60 0.31 -2.39 16 15 C 0.53 22.52 7.45 87.66 0.65 23.17 16 16 O -0.60 -32.26 15.92 -3.04 -0.05 -32.31 16 17 C -0.14 -3.93 4.84 -11.54 -0.06 -3.99 16 18 H 0.15 3.26 6.44 -2.39 -0.02 3.25 16 19 C -0.15 -3.61 6.91 -9.82 -0.07 -3.68 16 20 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 21 C 0.08 1.39 7.44 72.51 0.54 1.93 16 22 O -0.39 -8.20 11.65 -148.98 -1.74 -9.94 16 23 C 0.08 1.62 7.44 72.49 0.54 2.16 16 24 C -0.18 -4.82 6.64 -9.84 -0.07 -4.88 16 25 H 0.11 3.44 7.82 -2.39 -0.02 3.42 16 26 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 27 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 28 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 29 H 0.07 2.43 8.07 -2.39 -0.02 2.42 16 30 H 0.10 2.41 5.73 -2.39 -0.01 2.40 16 31 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.11 1.50 7.65 -2.39 -0.02 1.48 16 35 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.11 7.76 -2.39 -0.02 1.09 16 38 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -75.85 327.08 3.25 -72.60 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 1.03 Total: 12.98 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 3.72 Total: -6.37 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -1.74 Total: -84.28 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -1.78 Total: -42.25 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -75.85 3.25 -72.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597142719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.167 kcal (2) G-P(sol) polarization free energy of solvation -75.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds