Wall clock time and date at job start Mon Mar 30 2020 05:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.50701 * 109.47097 * 119.99875 * 2 1 3 5 5 H 1.07998 * 120.00129 * 119.99586 * 4 2 1 6 6 C 1.37880 * 119.99861 * 300.00304 * 4 2 1 7 7 N 1.31512 * 119.99594 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99875 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47116 * 90.00386 * 8 6 4 10 10 H 1.48510 * 109.46673 * 210.00091 * 8 6 4 11 11 H 1.48498 * 109.47559 * 329.99678 * 8 6 4 12 12 C 1.50703 * 109.47292 * 239.99892 * 2 1 3 13 13 O 1.21278 * 119.99985 * 240.00503 * 12 2 1 14 14 N 1.34779 * 119.99944 * 60.00215 * 12 2 1 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 2 16 16 C 1.50701 * 109.46992 * 179.97438 * 15 14 12 17 17 N 1.31070 * 126.65971 * 90.02258 * 16 15 14 18 18 N 1.28832 * 107.99384 * 179.97438 * 17 16 15 19 19 N 1.28740 * 109.39894 * 0.02562 * 18 17 16 20 20 N 1.29021 * 108.80456 * 359.74529 * 19 18 17 21 21 C 1.46506 * 126.43835 * 180.25160 * 20 19 18 22 22 C 1.52994 * 117.49730 * 8.79721 * 21 20 19 23 23 C 1.52999 * 117.49760 * 300.17156 * 21 20 19 24 24 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 25 25 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47461 * 300.00301 * 1 2 3 27 27 H 0.97002 * 119.99739 * 179.97438 * 7 6 4 28 28 H 0.97000 * 119.99708 * 359.97438 * 14 12 2 29 29 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 30 30 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 31 31 H 1.09002 * 115.54926 * 154.50860 * 21 20 19 32 32 H 1.08996 * 117.50273 * 0.02562 * 22 21 20 33 33 H 1.08997 * 117.49486 * 145.02709 * 22 21 20 34 34 H 1.08998 * 117.50280 * 214.98333 * 23 21 20 35 35 H 1.09001 * 117.49752 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8596 3.5565 8 14 0.6258 1.2798 2.6540 9 1 -0.8021 0.8745 2.6992 10 1 0.9771 1.9954 3.9070 11 1 0.8491 2.1774 1.4923 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1191 14 7 1.7069 -0.2500 -2.4546 15 6 2.1948 -0.9409 -3.6507 16 6 1.6921 -0.2308 -4.8812 17 7 2.2898 0.7447 -5.5209 18 7 1.5461 1.0815 -6.5175 19 7 0.4892 0.3466 -6.5300 20 7 0.5446 -0.4785 -5.5397 21 6 -0.4550 -1.4925 -5.1949 22 6 -1.5860 -1.7384 -6.1955 23 6 -1.8724 -1.0093 -4.8812 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.9031 -0.5280 4.4375 28 1 1.1489 0.5385 -2.5436 29 1 1.8311 -1.9685 -3.6506 30 1 3.2848 -0.9413 -3.6508 31 1 -0.0808 -2.3508 -4.6368 32 1 -1.5861 -1.1461 -7.1105 33 1 -1.9561 -2.7587 -6.2959 34 1 -2.4309 -1.5498 -4.1170 35 1 -2.0610 0.0631 -4.9309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597309801.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:44 Heat of formation + Delta-G solvation = 116.572681 kcal Electronic energy + Delta-G solvation = -19885.734321 eV Core-core repulsion = 16730.149499 eV Total energy + Delta-G solvation = -3155.584823 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.43042 -39.18078 -38.28905 -35.15642 -33.94150 -33.93766 -32.36744 -31.20685 -27.49878 -25.50028 -25.22557 -23.45147 -23.02225 -22.42824 -21.40161 -19.77257 -18.15412 -17.31501 -16.84473 -16.59880 -15.70754 -15.49146 -15.01427 -14.75005 -14.27377 -14.00636 -13.48048 -13.24366 -12.99829 -12.57293 -12.46666 -12.37459 -12.22030 -12.17016 -11.68274 -11.46751 -11.19618 -11.06854 -10.76173 -10.68497 -10.41880 -10.26847 -9.71217 -9.18324 -8.91489 -8.88949 -8.63652 -6.11125 -4.12148 0.85612 1.54652 1.96631 2.97645 3.17775 3.26719 3.32595 3.36951 3.42840 3.72903 3.79911 4.03969 4.16414 4.25035 4.32242 4.86858 5.00863 5.09549 5.17909 5.28627 5.31303 5.40615 5.46660 5.49471 5.71284 5.91407 6.00283 6.19220 6.31925 6.54593 6.62721 7.05356 7.43694 7.85880 8.37164 8.46029 8.86126 9.07781 9.47195 11.01663 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.026680 B = 0.004800 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.222082 B = 5831.499657 C = 6098.483452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.002 4.002 3 H 0.055 0.945 4 C -0.508 4.508 5 H 0.095 0.905 6 C 0.072 3.928 7 N -0.894 5.894 8 Si 0.883 3.117 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.267 1.267 12 C 0.535 3.465 13 O -0.523 6.523 14 N -0.744 5.744 15 C 0.206 3.794 16 C 0.178 3.822 17 N -0.286 5.286 18 N -0.076 5.076 19 N -0.095 5.095 20 N -0.270 5.270 21 C 0.044 3.956 22 C -0.154 4.154 23 C -0.159 4.159 24 H 0.031 0.969 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.265 0.735 28 H 0.398 0.602 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.164 0.836 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.591 -0.845 -17.578 20.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 H 0.073 0.927 4 C -0.546 4.546 5 H 0.112 0.888 6 C -0.130 4.130 7 N -0.531 5.531 8 Si 0.713 3.287 9 H -0.205 1.205 10 H -0.222 1.222 11 H -0.192 1.192 12 C 0.323 3.677 13 O -0.397 6.397 14 N -0.402 5.402 15 C 0.079 3.921 16 C -0.100 4.100 17 N -0.136 5.136 18 N -0.070 5.070 19 N -0.080 5.080 20 N -0.072 5.072 21 C -0.059 4.059 22 C -0.192 4.192 23 C -0.197 4.197 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.232 0.768 29 H 0.108 0.892 30 H 0.125 0.875 31 H 0.181 0.819 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.907 -0.618 -18.318 20.378 hybrid contribution -1.070 0.561 0.751 1.423 sum -9.978 -0.057 -17.567 20.203 Atomic orbital electron populations 1.22125 0.97284 1.01496 0.99296 1.19325 0.93234 0.97729 0.92120 0.92742 1.20908 1.32361 1.14226 0.87108 0.88756 1.24966 0.95784 0.96487 0.95759 1.69873 1.45260 1.40089 0.97915 0.86939 0.80638 0.83869 0.77259 1.20525 1.22192 1.19244 1.21367 0.78723 0.84259 0.83303 1.90610 1.36752 1.26151 1.86144 1.46283 1.56215 1.33040 1.04642 1.19534 1.01121 0.94206 0.77267 1.26136 0.86133 0.97885 0.99866 1.75109 1.24078 1.10710 1.03663 1.78667 0.97061 1.17592 1.13660 1.78822 1.19651 1.01633 1.07926 1.47928 1.16344 1.24721 1.18180 1.22480 0.83523 0.92164 1.07696 1.23457 0.96939 1.03693 0.95077 1.23554 0.93581 1.02781 0.99830 0.95039 0.92258 0.93132 0.92471 0.76777 0.89181 0.87474 0.81904 0.86586 0.86228 0.85897 0.87392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.57 37.16 0.32 -2.42 16 2 C 0.00 -0.05 2.23 -92.92 -0.21 -0.26 16 3 H 0.05 1.19 7.20 -51.93 -0.37 0.81 16 4 C -0.51 -14.06 8.96 -34.44 -0.31 -14.37 16 5 H 0.09 2.98 7.00 -52.49 -0.37 2.61 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 7 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 8 Si 0.88 20.68 24.37 -169.99 -4.14 16.54 16 9 H -0.28 -6.27 6.87 56.52 0.39 -5.88 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -5.85 6.53 56.52 0.37 -5.48 16 12 C 0.53 10.63 7.15 -10.98 -0.08 10.55 16 13 O -0.52 -12.30 15.46 5.56 0.09 -12.21 16 14 N -0.74 -10.94 5.44 -61.47 -0.33 -11.27 16 15 C 0.21 2.56 6.01 -5.19 -0.03 2.53 16 16 C 0.18 2.22 7.50 -155.43 -1.17 1.05 16 17 N -0.29 -4.28 12.36 32.70 0.40 -3.88 16 18 N -0.08 -1.16 13.43 60.35 0.81 -0.35 16 19 N -0.10 -1.24 12.69 60.35 0.77 -0.47 16 20 N -0.27 -2.96 3.67 -51.81 -0.19 -3.15 16 21 C 0.04 0.32 6.63 -67.93 -0.45 -0.13 16 22 C -0.15 -0.82 10.15 -26.73 -0.27 -1.09 16 23 C -0.16 -0.94 10.46 -26.73 -0.28 -1.22 16 24 H 0.03 0.46 7.56 -51.93 -0.39 0.07 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 27 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.40 5.24 7.88 -40.82 -0.32 4.92 16 29 H 0.09 0.97 7.34 -51.93 -0.38 0.58 16 30 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.16 0.90 7.41 -51.93 -0.38 0.52 16 32 H 0.12 0.74 7.85 -51.93 -0.41 0.33 16 33 H 0.12 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 299.53 15.07 4.51 4.51 Total: -1.00 -33.95 299.53 -3.98 -37.93 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -4.09 Total: 1.90 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -2.57 Total: -3.44 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 2.23 Total: -45.24 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.14 Total: 16.54 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.95 -3.98 -37.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597309801.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.506 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds