Wall clock time and date at job start Mon Mar 30 2020 05:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.50701 * 109.47097 * 119.99875 * 2 1 3 5 5 H 1.07998 * 120.00129 * 119.99586 * 4 2 1 6 6 C 1.37880 * 119.99861 * 300.00304 * 4 2 1 7 7 N 1.31512 * 119.99594 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99875 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47116 * 90.00386 * 8 6 4 10 10 H 1.48510 * 109.46673 * 210.00091 * 8 6 4 11 11 H 1.48498 * 109.47559 * 329.99678 * 8 6 4 12 12 C 1.50703 * 109.47292 * 239.99892 * 2 1 3 13 13 O 1.21278 * 119.99985 * 240.00503 * 12 2 1 14 14 N 1.34779 * 119.99944 * 60.00215 * 12 2 1 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 2 16 16 C 1.50701 * 109.46992 * 179.97438 * 15 14 12 17 17 N 1.31070 * 126.65971 * 90.02258 * 16 15 14 18 18 N 1.28832 * 107.99384 * 179.97438 * 17 16 15 19 19 N 1.28740 * 109.39894 * 0.02562 * 18 17 16 20 20 N 1.29021 * 108.80456 * 359.74529 * 19 18 17 21 21 C 1.46506 * 126.43835 * 180.25160 * 20 19 18 22 22 C 1.52994 * 117.49730 * 8.79721 * 21 20 19 23 23 C 1.52999 * 117.49760 * 300.17156 * 21 20 19 24 24 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 25 25 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47461 * 300.00301 * 1 2 3 27 27 H 0.97002 * 119.99739 * 179.97438 * 7 6 4 28 28 H 0.97000 * 119.99708 * 359.97438 * 14 12 2 29 29 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 30 30 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 31 31 H 1.09002 * 115.54926 * 154.50860 * 21 20 19 32 32 H 1.08996 * 117.50273 * 0.02562 * 22 21 20 33 33 H 1.08997 * 117.49486 * 145.02709 * 22 21 20 34 34 H 1.08998 * 117.50280 * 214.98333 * 23 21 20 35 35 H 1.09001 * 117.49752 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8596 3.5565 8 14 0.6258 1.2798 2.6540 9 1 -0.8021 0.8745 2.6992 10 1 0.9771 1.9954 3.9070 11 1 0.8491 2.1774 1.4923 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1191 14 7 1.7069 -0.2500 -2.4546 15 6 2.1948 -0.9409 -3.6507 16 6 1.6921 -0.2308 -4.8812 17 7 2.2898 0.7447 -5.5209 18 7 1.5461 1.0815 -6.5175 19 7 0.4892 0.3466 -6.5300 20 7 0.5446 -0.4785 -5.5397 21 6 -0.4550 -1.4925 -5.1949 22 6 -1.5860 -1.7384 -6.1955 23 6 -1.8724 -1.0093 -4.8812 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.9031 -0.5280 4.4375 28 1 1.1489 0.5385 -2.5436 29 1 1.8311 -1.9685 -3.6506 30 1 3.2848 -0.9413 -3.6508 31 1 -0.0808 -2.3508 -4.6368 32 1 -1.5861 -1.1461 -7.1105 33 1 -1.9561 -2.7587 -6.2959 34 1 -2.4309 -1.5498 -4.1170 35 1 -2.0610 0.0631 -4.9309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597309801.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:44 Heat of formation + Delta-G solvation = 89.913531 kcal Electronic energy + Delta-G solvation = -19886.890349 eV Core-core repulsion = 16730.149499 eV Total energy + Delta-G solvation = -3156.740850 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.41519 -40.72802 -38.89069 -36.45156 -35.78441 -34.79525 -33.75441 -32.93589 -28.68142 -27.07752 -26.36110 -24.75727 -23.84921 -23.33062 -22.26126 -21.28770 -18.93826 -18.80513 -18.31162 -18.01377 -17.03410 -16.41465 -16.39448 -16.12002 -15.56785 -15.11063 -14.84323 -14.52648 -14.26131 -14.05114 -13.73421 -13.40501 -13.39089 -13.20054 -12.78352 -12.60589 -12.53762 -12.37354 -12.13744 -11.72471 -11.70039 -11.47468 -11.19536 -11.07393 -10.75590 -10.49843 -10.22432 -8.24646 -6.32030 -0.09008 0.75364 0.89891 1.34666 1.41976 1.52113 1.80093 2.21256 2.35933 2.49672 2.70569 3.08008 3.09771 3.35506 3.63851 3.72019 3.98984 4.13260 4.24928 4.39730 4.44648 4.44763 4.62731 4.65202 4.68979 4.79070 4.92261 5.03976 5.07416 5.12727 5.26080 5.47074 5.54096 6.24403 6.54621 6.84322 7.26994 7.35948 7.39962 8.92695 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.026680 B = 0.004800 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.222082 B = 5831.499657 C = 6098.483452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.009 4.009 3 H 0.065 0.935 4 C -0.518 4.518 5 H 0.036 0.964 6 C 0.009 3.991 7 N -0.951 5.951 8 Si 0.955 3.045 9 H -0.258 1.258 10 H -0.304 1.304 11 H -0.235 1.235 12 C 0.541 3.459 13 O -0.569 6.569 14 N -0.721 5.721 15 C 0.210 3.790 16 C 0.180 3.820 17 N -0.310 5.310 18 N -0.105 5.105 19 N -0.093 5.093 20 N -0.255 5.255 21 C 0.015 3.985 22 C -0.141 4.141 23 C -0.152 4.152 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.042 0.958 27 H 0.266 0.734 28 H 0.410 0.590 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.184 0.816 32 H 0.104 0.896 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.264 0.119 -19.158 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 H 0.083 0.917 4 C -0.556 4.556 5 H 0.054 0.946 6 C -0.187 4.187 7 N -0.591 5.591 8 Si 0.780 3.220 9 H -0.184 1.184 10 H -0.232 1.232 11 H -0.158 1.158 12 C 0.330 3.670 13 O -0.446 6.446 14 N -0.377 5.377 15 C 0.084 3.916 16 C -0.098 4.098 17 N -0.161 5.161 18 N -0.098 5.098 19 N -0.079 5.079 20 N -0.056 5.056 21 C -0.086 4.086 22 C -0.178 4.178 23 C -0.190 4.190 24 H 0.100 0.900 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.247 0.753 29 H 0.132 0.868 30 H 0.120 0.880 31 H 0.201 0.799 32 H 0.123 0.877 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.618 0.368 -19.972 23.109 hybrid contribution -0.225 0.141 1.167 1.197 sum -11.843 0.509 -18.806 22.230 Atomic orbital electron populations 1.22010 0.94158 1.02135 1.01300 1.19276 0.95694 0.97395 0.90727 0.91682 1.21083 1.31548 1.12895 0.90067 0.94593 1.25952 0.97444 1.00369 0.94982 1.70065 1.47648 1.42704 0.98716 0.85784 0.79082 0.79341 0.77792 1.18405 1.23170 1.15850 1.20908 0.78277 0.83542 0.84310 1.90608 1.38894 1.28188 1.86924 1.45850 1.55099 1.32902 1.03842 1.19594 1.00927 0.95024 0.76066 1.25884 0.86622 0.97567 0.99750 1.75034 1.25013 1.11845 1.04186 1.78656 0.97865 1.18880 1.14426 1.78757 1.19074 1.01696 1.08360 1.48190 1.16253 1.24294 1.16893 1.23114 0.83564 0.92164 1.09769 1.23572 0.95031 1.04971 0.94241 1.23649 0.92074 1.02509 1.00762 0.89997 0.92507 0.93915 0.92464 0.75343 0.86776 0.88028 0.79922 0.87710 0.83522 0.83832 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 8.57 71.98 0.62 -4.10 16 2 C -0.01 -0.39 2.23 -12.28 -0.03 -0.42 16 3 H 0.07 2.64 7.20 -2.39 -0.02 2.62 16 4 C -0.52 -29.31 8.96 25.60 0.23 -29.08 16 5 H 0.04 2.40 7.00 -2.91 -0.02 2.38 16 6 C 0.01 0.52 5.45 84.66 0.46 0.98 16 7 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16 8 Si 0.95 41.68 24.37 68.60 1.67 43.35 16 9 H -0.26 -10.42 6.87 99.48 0.68 -9.73 16 10 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 11 H -0.24 -8.97 6.53 99.48 0.65 -8.33 16 12 C 0.54 20.85 7.15 87.66 0.63 21.47 16 13 O -0.57 -27.08 15.46 -3.02 -0.05 -27.12 16 14 N -0.72 -19.27 5.44 -466.78 -2.54 -21.81 16 15 C 0.21 4.78 6.01 85.63 0.51 5.29 16 16 C 0.18 4.12 7.50 138.14 1.04 5.16 16 17 N -0.31 -8.93 12.36 -50.45 -0.62 -9.55 16 18 N -0.11 -3.09 13.43 37.01 0.50 -2.59 16 19 N -0.09 -2.27 12.69 37.02 0.47 -1.80 16 20 N -0.25 -4.95 3.67 -317.82 -1.17 -6.11 16 21 C 0.02 0.17 6.63 44.99 0.30 0.47 16 22 C -0.14 -1.02 10.15 30.59 0.31 -0.71 16 23 C -0.15 -1.24 10.46 30.60 0.32 -0.92 16 24 H 0.08 1.96 7.56 -2.38 -0.02 1.95 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.04 1.54 3.27 -2.39 -0.01 1.53 16 27 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16 28 H 0.41 9.23 7.88 -92.71 -0.73 8.50 16 29 H 0.11 2.12 7.34 -2.39 -0.02 2.11 16 30 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.18 1.29 7.41 -2.39 -0.02 1.27 16 32 H 0.10 1.06 7.85 -2.39 -0.02 1.04 16 33 H 0.15 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -78.35 299.53 3.27 -75.08 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.32 Total: 11.47 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 4.39 Total: -1.86 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -3.06 Total: -100.91 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.05 Total: -27.12 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.67 Total: 43.35 kcal Total: -78.35 3.27 -75.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597309801.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.990 kcal (2) G-P(sol) polarization free energy of solvation -78.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds