Wall clock time and date at job start Mon Mar 30 2020 04:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47352 * 2 1 4 4 C 1.50693 * 109.47665 * 120.00600 * 2 1 3 5 5 H 1.07999 * 120.00594 * 119.99318 * 4 2 1 6 6 C 1.37884 * 119.99915 * 299.99776 * 4 2 1 7 7 N 1.31511 * 119.99791 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00026 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46776 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.46900 * 299.99820 * 8 6 4 11 11 H 1.48498 * 109.47145 * 60.00250 * 8 6 4 12 12 C 1.50707 * 109.46706 * 240.00647 * 2 1 3 13 13 O 1.21306 * 119.99575 * 240.00012 * 12 2 1 14 14 N 1.34770 * 120.00298 * 60.00000 * 12 2 1 15 15 C 1.40707 * 120.00083 * 179.97438 * 14 12 2 16 16 C 1.40215 * 126.12928 * 0.02562 * 15 14 12 17 17 C 1.37897 * 107.10738 * 179.97438 * 16 15 14 18 18 C 1.46666 * 126.16310 * 180.02562 * 17 16 15 19 19 N 1.34770 * 120.00326 * 354.24899 * 18 17 16 20 20 O 1.21702 * 119.99382 * 174.25632 * 18 17 16 21 21 N 1.37611 * 107.66739 * 0.02562 * 17 16 15 22 22 C 1.46497 * 125.64443 * 179.97438 * 21 17 16 23 23 C 1.35835 * 108.70680 * 359.73735 * 21 17 16 24 24 H 1.08996 * 109.47060 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46260 * 299.99479 * 1 2 3 26 26 H 1.08992 * 109.47406 * 59.99095 * 1 2 3 27 27 H 0.96999 * 119.99988 * 179.97438 * 7 6 4 28 28 H 0.97000 * 119.99656 * 359.97438 * 14 12 2 29 29 H 1.08002 * 126.44405 * 0.02562 * 16 15 14 30 30 H 0.97006 * 120.00095 * 5.04117 * 19 18 17 31 31 H 0.96996 * 120.00352 * 185.03354 * 19 18 17 32 32 H 1.09004 * 109.46869 * 93.86001 * 22 21 17 33 33 H 1.08997 * 109.47152 * 213.85709 * 22 21 17 34 34 H 1.08998 * 109.47214 * 333.85986 * 22 21 17 35 35 H 1.08005 * 125.61548 * 180.26513 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6995 -0.2395 2.4827 7 7 0.9430 0.8294 2.6035 8 14 2.3217 -1.1206 4.0078 9 1 1.8263 -0.4209 5.2203 10 1 1.8261 -2.5205 4.0075 11 1 3.8067 -1.1211 4.0079 12 6 2.0323 -0.7103 -1.2306 13 8 2.7296 -1.6966 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 6 2.1760 -0.9127 -3.6036 16 6 2.9855 -2.0574 -3.6249 17 6 3.2081 -2.3722 -4.9488 18 6 4.0038 -3.4983 -5.4487 19 7 4.6931 -4.2716 -4.5866 20 8 4.0416 -3.7343 -6.6420 21 7 2.5492 -1.4393 -5.7164 22 6 2.5241 -1.4026 -7.1807 23 6 1.9216 -0.5613 -4.8916 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 0.7084 1.1606 3.4845 28 1 1.1487 0.5387 -2.5435 29 1 3.3628 -2.5924 -2.7659 30 1 4.6056 -4.1296 -3.6310 31 1 5.2767 -4.9702 -4.9216 32 1 1.6407 -1.9289 -7.5423 33 1 2.4931 -0.3665 -7.5177 34 1 3.4199 -1.8851 -7.5717 35 1 1.3211 0.2791 -5.2073 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597371336.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:41 Heat of formation + Delta-G solvation = -28.885629 kcal Electronic energy + Delta-G solvation = -19702.585124 eV Core-core repulsion = 16508.400005 eV Total energy + Delta-G solvation = -3194.185119 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.35889 -39.08743 -38.41946 -34.39332 -33.84328 -33.76814 -31.73881 -30.32870 -28.73379 -26.06317 -25.16459 -23.44574 -22.63481 -20.56408 -19.78178 -18.91796 -18.08656 -16.70399 -16.26960 -15.86826 -15.67501 -15.52133 -14.97181 -14.44090 -14.29510 -14.06048 -13.89146 -13.16674 -13.03873 -12.66336 -12.30968 -12.27630 -12.11641 -11.55556 -11.00719 -10.78713 -10.70398 -10.37371 -10.13878 -10.05735 -9.98657 -9.76560 -9.02154 -8.62111 -8.34176 -8.28265 -7.33560 -6.05381 -4.08768 1.49723 2.70356 2.74632 3.35198 3.38043 3.41695 3.42741 3.56800 3.91535 4.00976 4.45919 4.83418 4.92981 5.06151 5.18276 5.28254 5.47437 5.54009 5.84060 6.05321 6.33237 6.53942 6.61400 6.71082 6.79181 6.89537 6.92561 7.20935 7.34062 7.41370 7.48434 7.73384 7.96695 8.11457 8.20219 8.39085 8.99382 9.14970 9.56800 11.02275 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.031610 B = 0.004455 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.586294 B = 6282.898591 C = 7077.286440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.032 3.968 3 H 0.055 0.945 4 C -0.502 4.502 5 H 0.075 0.925 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.901 3.099 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.522 3.478 13 O -0.530 6.530 14 N -0.664 5.664 15 C 0.079 3.921 16 C -0.134 4.134 17 C -0.060 4.060 18 C 0.601 3.399 19 N -0.842 5.842 20 O -0.564 6.564 21 N -0.409 5.409 22 C 0.073 3.927 23 C -0.031 4.031 24 H 0.032 0.968 25 H 0.094 0.906 26 H 0.012 0.988 27 H 0.262 0.738 28 H 0.405 0.595 29 H 0.170 0.830 30 H 0.409 0.591 31 H 0.406 0.594 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.885 -2.249 -15.034 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.011 3.989 3 H 0.072 0.928 4 C -0.540 4.540 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.312 3.688 13 O -0.405 6.405 14 N -0.309 5.309 15 C -0.021 4.021 16 C -0.163 4.163 17 C -0.174 4.174 18 C 0.388 3.612 19 N -0.405 5.405 20 O -0.444 6.444 21 N -0.084 5.084 22 C -0.068 4.068 23 C -0.168 4.168 24 H 0.051 0.949 25 H 0.113 0.887 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.240 0.760 29 H 0.188 0.812 30 H 0.240 0.760 31 H 0.237 0.763 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.218 -2.840 -15.896 16.299 hybrid contribution 0.042 -0.063 1.098 1.101 sum 2.260 -2.903 -14.797 15.248 Atomic orbital electron populations 1.21765 0.96401 0.99990 1.01045 1.18882 0.94213 0.96906 0.88918 0.92751 1.21077 1.31180 1.12887 0.88878 0.90719 1.24945 0.95073 0.95045 0.99123 1.69854 1.36949 1.23069 1.23707 0.86496 0.79265 0.79708 0.81606 1.21406 1.20191 1.20179 1.22132 0.78412 0.84334 0.83881 1.90409 1.37337 1.26539 1.86231 1.43522 1.52619 1.30953 1.03799 1.17123 1.01965 0.96734 0.86322 1.21835 1.01932 0.98046 0.94512 1.19929 1.08939 0.98033 0.90501 1.16934 0.78047 0.80873 0.85322 1.43482 1.48385 1.37657 1.10980 1.90784 1.65509 1.72370 1.15770 1.43380 1.37540 1.21260 1.06261 1.22184 1.05127 1.03252 0.76286 1.21283 1.07032 1.00022 0.88430 0.94857 0.88723 0.96863 0.92865 0.75998 0.81241 0.76048 0.76325 0.90933 0.90271 0.88078 0.81364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.87 37.16 0.33 -2.64 16 2 C 0.03 0.76 2.64 -92.92 -0.25 0.52 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -13.74 8.37 -34.44 -0.29 -14.03 16 5 H 0.07 2.14 6.75 -52.49 -0.35 1.78 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -24.57 11.32 55.43 0.63 -23.94 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.52 11.41 7.12 -10.99 -0.08 11.33 16 13 O -0.53 -12.78 12.64 5.53 0.07 -12.71 16 14 N -0.66 -11.54 5.36 -10.02 -0.05 -11.59 16 15 C 0.08 1.31 6.91 -83.87 -0.58 0.73 16 16 C -0.13 -2.26 9.14 -38.96 -0.36 -2.62 16 17 C -0.06 -0.91 6.88 -82.00 -0.56 -1.47 16 18 C 0.60 8.53 8.04 -12.86 -0.10 8.42 16 19 N -0.84 -8.95 8.86 30.26 0.27 -8.68 16 20 O -0.56 -9.07 15.48 5.19 0.08 -8.99 16 21 N -0.41 -5.50 3.17 -120.03 -0.38 -5.88 16 22 C 0.07 0.73 10.63 59.85 0.64 1.37 16 23 C -0.03 -0.42 11.42 -16.61 -0.19 -0.61 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 26 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 27 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.41 5.84 8.24 -40.82 -0.34 5.50 16 29 H 0.17 3.04 5.37 -52.49 -0.28 2.76 16 30 H 0.41 4.02 7.73 -40.82 -0.32 3.70 16 31 H 0.41 3.38 8.93 -40.82 -0.36 3.01 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.10 1.14 6.22 -51.93 -0.32 0.82 16 35 H 0.17 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 298.81 15.07 4.50 4.50 Total: -1.00 -32.84 298.81 -5.37 -38.21 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -3.93 Total: 10.28 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -1.53 Total: 2.52 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.46 Total: -50.09 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: 0.15 Total: -21.70 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.84 -5.37 -38.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597371336.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.325 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds