Wall clock time and date at job start Mon Mar 30 2020 04:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47352 * 2 1 4 4 C 1.50693 * 109.47665 * 120.00600 * 2 1 3 5 5 H 1.07999 * 120.00594 * 119.99318 * 4 2 1 6 6 C 1.37884 * 119.99915 * 299.99776 * 4 2 1 7 7 N 1.31511 * 119.99791 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00026 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46776 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.46900 * 299.99820 * 8 6 4 11 11 H 1.48498 * 109.47145 * 60.00250 * 8 6 4 12 12 C 1.50707 * 109.46706 * 240.00647 * 2 1 3 13 13 O 1.21306 * 119.99575 * 240.00012 * 12 2 1 14 14 N 1.34770 * 120.00298 * 60.00000 * 12 2 1 15 15 C 1.40707 * 120.00083 * 179.97438 * 14 12 2 16 16 C 1.40215 * 126.12928 * 0.02562 * 15 14 12 17 17 C 1.37897 * 107.10738 * 179.97438 * 16 15 14 18 18 C 1.46666 * 126.16310 * 180.02562 * 17 16 15 19 19 N 1.34770 * 120.00326 * 354.24899 * 18 17 16 20 20 O 1.21702 * 119.99382 * 174.25632 * 18 17 16 21 21 N 1.37611 * 107.66739 * 0.02562 * 17 16 15 22 22 C 1.46497 * 125.64443 * 179.97438 * 21 17 16 23 23 C 1.35835 * 108.70680 * 359.73735 * 21 17 16 24 24 H 1.08996 * 109.47060 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46260 * 299.99479 * 1 2 3 26 26 H 1.08992 * 109.47406 * 59.99095 * 1 2 3 27 27 H 0.96999 * 119.99988 * 179.97438 * 7 6 4 28 28 H 0.97000 * 119.99656 * 359.97438 * 14 12 2 29 29 H 1.08002 * 126.44405 * 0.02562 * 16 15 14 30 30 H 0.97006 * 120.00095 * 5.04117 * 19 18 17 31 31 H 0.96996 * 120.00352 * 185.03354 * 19 18 17 32 32 H 1.09004 * 109.46869 * 93.86001 * 22 21 17 33 33 H 1.08997 * 109.47152 * 213.85709 * 22 21 17 34 34 H 1.08998 * 109.47214 * 333.85986 * 22 21 17 35 35 H 1.08005 * 125.61548 * 180.26513 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6995 -0.2395 2.4827 7 7 0.9430 0.8294 2.6035 8 14 2.3217 -1.1206 4.0078 9 1 1.8263 -0.4209 5.2203 10 1 1.8261 -2.5205 4.0075 11 1 3.8067 -1.1211 4.0079 12 6 2.0323 -0.7103 -1.2306 13 8 2.7296 -1.6966 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 6 2.1760 -0.9127 -3.6036 16 6 2.9855 -2.0574 -3.6249 17 6 3.2081 -2.3722 -4.9488 18 6 4.0038 -3.4983 -5.4487 19 7 4.6931 -4.2716 -4.5866 20 8 4.0416 -3.7343 -6.6420 21 7 2.5492 -1.4393 -5.7164 22 6 2.5241 -1.4026 -7.1807 23 6 1.9216 -0.5613 -4.8916 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 0.7084 1.1606 3.4845 28 1 1.1487 0.5387 -2.5435 29 1 3.3628 -2.5924 -2.7659 30 1 4.6056 -4.1296 -3.6310 31 1 5.2767 -4.9702 -4.9216 32 1 1.6407 -1.9289 -7.5423 33 1 2.4931 -0.3665 -7.5177 34 1 3.4199 -1.8851 -7.5717 35 1 1.3211 0.2791 -5.2073 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597371336.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:34 Heat of formation + Delta-G solvation = -53.835130 kcal Electronic energy + Delta-G solvation = -19703.667016 eV Core-core repulsion = 16508.400005 eV Total energy + Delta-G solvation = -3195.267011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.50752 -40.52202 -39.70294 -35.86237 -35.63206 -34.91611 -33.08063 -32.02806 -29.89952 -27.20156 -27.06703 -24.87669 -24.02155 -21.94453 -20.99381 -20.36008 -19.21599 -18.24734 -17.74251 -17.41102 -16.86107 -16.68644 -16.33183 -16.14224 -15.78706 -15.22005 -15.07096 -14.70395 -14.44390 -14.23584 -13.61537 -13.29231 -13.24636 -13.21543 -12.90546 -12.67422 -12.52050 -12.18012 -11.96544 -11.48909 -11.25234 -11.00775 -10.76197 -10.54114 -10.19765 -9.43568 -8.57440 -8.11246 -6.20950 0.38870 1.40714 1.45259 1.46317 1.54288 1.68783 2.18452 2.35163 2.45356 2.51512 2.84085 3.19239 3.84137 4.02225 4.13418 4.34166 4.45248 4.50293 4.70498 4.78404 4.79425 4.98712 5.02136 5.14451 5.30836 5.54141 5.66644 5.78677 5.88129 5.96276 6.08859 6.26356 6.27575 6.33288 6.79891 6.91606 7.20445 7.44026 7.58062 8.94423 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.031610 B = 0.004455 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.586294 B = 6282.898591 C = 7077.286440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.028 3.972 3 H 0.045 0.955 4 C -0.527 4.527 5 H 0.053 0.947 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.954 3.046 9 H -0.278 1.278 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.521 3.479 13 O -0.563 6.563 14 N -0.644 5.644 15 C 0.035 3.965 16 C -0.154 4.154 17 C -0.071 4.071 18 C 0.597 3.403 19 N -0.825 5.825 20 O -0.585 6.585 21 N -0.406 5.406 22 C 0.068 3.932 23 C 0.004 3.996 24 H 0.022 0.978 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.264 0.736 28 H 0.421 0.579 29 H 0.150 0.850 30 H 0.414 0.586 31 H 0.418 0.582 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -1.552 -16.621 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.007 3.993 3 H 0.062 0.938 4 C -0.565 4.565 5 H 0.071 0.929 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.780 3.220 9 H -0.203 1.203 10 H -0.202 1.202 11 H -0.201 1.201 12 C 0.311 3.689 13 O -0.441 6.441 14 N -0.290 5.290 15 C -0.064 4.064 16 C -0.183 4.183 17 C -0.186 4.186 18 C 0.384 3.616 19 N -0.389 5.389 20 O -0.468 6.468 21 N -0.079 5.079 22 C -0.072 4.072 23 C -0.134 4.134 24 H 0.041 0.959 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.258 0.742 29 H 0.167 0.833 30 H 0.245 0.755 31 H 0.251 0.749 32 H 0.103 0.897 33 H 0.133 0.867 34 H 0.106 0.894 35 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.632 -2.140 -17.520 17.726 hybrid contribution 0.236 -0.270 1.482 1.525 sum 1.868 -2.410 -16.038 16.325 Atomic orbital electron populations 1.21582 0.95022 0.99483 1.01878 1.18793 0.95310 0.96049 0.89174 0.93753 1.21264 1.31549 1.12776 0.90910 0.92923 1.25568 0.95241 0.95733 1.01366 1.69937 1.37224 1.23634 1.24296 0.85673 0.78678 0.78725 0.78926 1.20272 1.20192 1.20141 1.21641 0.78485 0.83989 0.84832 1.90405 1.38874 1.27876 1.86905 1.43024 1.52034 1.31035 1.02863 1.17337 1.04196 0.97796 0.87072 1.21718 1.02968 0.98835 0.94825 1.19980 1.09554 0.98805 0.90212 1.16965 0.78270 0.81066 0.85286 1.43379 1.47491 1.37102 1.10933 1.90771 1.66503 1.73048 1.16516 1.43754 1.36208 1.20297 1.07669 1.22438 1.05068 1.05700 0.73954 1.21854 1.04859 0.99710 0.86929 0.95891 0.91068 0.92730 0.92678 0.74196 0.83263 0.75507 0.74910 0.89657 0.86678 0.89408 0.76911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.87 71.98 0.64 -4.69 16 2 C 0.03 1.35 2.64 -12.29 -0.03 1.32 16 3 H 0.04 2.22 8.14 -2.38 -0.02 2.20 16 4 C -0.53 -29.52 8.37 25.60 0.21 -29.30 16 5 H 0.05 3.13 6.75 -2.91 -0.02 3.11 16 6 C 0.02 1.09 5.30 84.66 0.45 1.54 16 7 N -0.91 -50.13 11.32 21.45 0.24 -49.88 16 8 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 C 0.52 22.97 7.12 87.66 0.62 23.60 16 13 O -0.56 -28.02 12.64 -3.11 -0.04 -28.06 16 14 N -0.64 -21.58 5.36 -304.01 -1.63 -23.21 16 15 C 0.04 1.11 6.91 37.66 0.26 1.37 16 16 C -0.15 -5.20 9.14 22.67 0.21 -4.99 16 17 C -0.07 -2.08 6.88 40.36 0.28 -1.80 16 18 C 0.60 16.57 8.04 86.44 0.70 17.27 16 19 N -0.83 -17.28 8.86 -176.40 -1.56 -18.84 16 20 O -0.59 -18.32 15.48 -4.36 -0.07 -18.39 16 21 N -0.41 -9.78 3.17 -533.65 -1.69 -11.47 16 22 C 0.07 1.14 10.63 127.77 1.36 2.50 16 23 C 0.00 0.10 11.42 83.53 0.95 1.05 16 24 H 0.02 1.00 8.14 -2.39 -0.02 0.99 16 25 H 0.07 3.48 6.07 -2.39 -0.01 3.46 16 26 H 0.05 1.88 7.56 -2.39 -0.02 1.86 16 27 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 28 H 0.42 11.09 8.24 -92.71 -0.76 10.33 16 29 H 0.15 5.60 5.37 -2.91 -0.02 5.58 16 30 H 0.41 8.24 7.73 -92.70 -0.72 7.53 16 31 H 0.42 6.67 8.93 -92.71 -0.83 5.84 16 32 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.79 6.22 -2.39 -0.01 1.77 16 35 H 0.21 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -72.21 298.81 1.78 -70.43 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: -1.14 Total: 25.54 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 5.65 Total: 7.87 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -4.64 Total: -103.40 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -0.11 Total: -46.45 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -72.21 1.78 -70.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597371336.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.592 kcal (2) G-P(sol) polarization free energy of solvation -72.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds