Wall clock time and date at job start Mon Mar 30 2020 04:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47213 * 2 1 4 4 C 1.50706 * 109.46813 * 119.99547 * 2 1 3 5 5 H 1.08001 * 119.99384 * 120.00259 * 4 2 1 6 6 C 1.37876 * 120.00204 * 299.99776 * 4 2 1 7 7 N 1.31516 * 119.99686 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99981 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46908 * 60.00418 * 8 6 4 10 10 H 1.48501 * 109.46919 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47042 * 300.00571 * 8 6 4 12 12 C 1.50697 * 109.47217 * 239.99604 * 2 1 3 13 13 O 1.21282 * 120.00185 * 239.99676 * 12 2 1 14 14 N 1.34773 * 120.00142 * 60.00841 * 12 2 1 15 15 C 1.46498 * 120.00153 * 180.02562 * 14 12 2 16 16 C 1.50706 * 109.47286 * 179.97438 * 15 14 12 17 17 N 1.29946 * 126.28876 * 270.02709 * 16 15 14 18 18 O 1.21297 * 110.25321 * 179.68528 * 17 16 15 19 19 C 1.33646 * 109.80764 * 0.46050 * 18 17 16 20 20 C 1.50706 * 126.54918 * 179.80385 * 19 18 17 21 21 C 1.53002 * 117.49668 * 59.69212 * 20 19 18 22 22 C 1.53000 * 60.02940 * 252.51929 * 21 20 19 23 23 N 1.31125 * 106.90001 * 359.54417 * 19 18 17 24 24 H 1.09002 * 109.47213 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47488 * 300.00188 * 1 2 3 26 26 H 1.09006 * 109.46962 * 60.00407 * 1 2 3 27 27 H 0.97001 * 119.99466 * 179.97438 * 7 6 4 28 28 H 0.97006 * 119.99888 * 359.97438 * 14 12 2 29 29 H 1.09002 * 109.47525 * 59.99312 * 15 14 12 30 30 H 1.09003 * 109.46918 * 299.99017 * 15 14 12 31 31 H 1.09000 * 115.55924 * 205.37617 * 20 19 18 32 32 H 1.09002 * 117.49918 * 145.01964 * 21 20 19 33 33 H 1.09002 * 117.49754 * 0.02562 * 21 20 19 34 34 H 1.09008 * 117.49673 * 107.47884 * 22 21 20 35 35 H 1.08999 * 117.49942 * 252.47315 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9427 0.8299 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 3.8062 -1.1207 4.0083 10 1 1.8258 -0.4203 5.2205 11 1 1.8256 -2.5201 4.0079 12 6 2.0323 -0.7105 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7069 -0.2500 -2.4545 15 6 2.1948 -0.9410 -3.6506 16 6 1.6922 -0.2309 -4.8812 17 7 0.5802 -0.4728 -5.5085 18 8 0.4621 0.2740 -6.4570 19 6 1.5246 1.0812 -6.5328 20 6 1.7681 2.1494 -7.5677 21 6 0.7403 3.2778 -7.6735 22 6 0.8136 2.2061 -8.7630 23 7 2.3120 0.7700 -5.5315 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 0.7081 1.1611 3.4843 28 1 1.1490 0.5385 -2.5436 29 1 1.8310 -1.9686 -3.6504 30 1 3.2848 -0.9414 -3.6507 31 1 2.8134 2.4023 -7.7455 32 1 1.1093 4.2731 -7.9211 33 1 -0.1118 3.2478 -6.9944 34 1 0.0098 1.4706 -8.8004 35 1 1.2305 2.4964 -9.7273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597455285.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:53 Heat of formation + Delta-G solvation = 55.171861 kcal Electronic energy + Delta-G solvation = -19255.651454 eV Core-core repulsion = 16065.111341 eV Total energy + Delta-G solvation = -3190.540113 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.80821 -38.89090 -37.92094 -36.32333 -34.07338 -33.73324 -32.12310 -30.50510 -27.44608 -25.29641 -25.12423 -23.66719 -22.92257 -22.34029 -20.77622 -19.52206 -18.25608 -17.77215 -16.73310 -16.41030 -16.10304 -15.17953 -15.15228 -14.48930 -14.43045 -13.48674 -13.39959 -12.92048 -12.78317 -12.47815 -12.23604 -12.19398 -12.08875 -11.49002 -11.41904 -11.21455 -11.11832 -10.99477 -10.73229 -10.68701 -10.25537 -9.98671 -9.94102 -8.98537 -8.66926 -8.59351 -8.32984 -6.02126 -4.05548 0.88579 1.91492 2.48196 3.11563 3.37829 3.39907 3.40393 3.45827 3.65909 3.75932 4.02826 4.18065 4.32495 4.47334 4.48956 4.86705 5.11039 5.21619 5.30934 5.36936 5.44592 5.54333 5.60698 5.68055 5.83523 6.19832 6.61919 6.83150 6.85078 6.94477 7.47032 7.75271 7.96799 7.98691 8.11169 8.39102 9.02900 9.15459 9.59799 11.05583 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.042461 B = 0.003499 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.272046 B = 8000.908998 C = 8284.676355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.032 3.968 3 H 0.054 0.946 4 C -0.502 4.502 5 H 0.075 0.925 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.524 3.476 13 O -0.542 6.542 14 N -0.741 5.741 15 C 0.213 3.787 16 C 0.164 3.836 17 N -0.367 5.367 18 O 0.081 5.919 19 C 0.204 3.796 20 C -0.079 4.079 21 C -0.152 4.152 22 C -0.159 4.159 23 N -0.464 5.464 24 H 0.032 0.968 25 H 0.094 0.906 26 H 0.010 0.990 27 H 0.261 0.739 28 H 0.398 0.602 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.150 0.850 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.770 5.871 -22.389 23.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.011 3.989 3 H 0.072 0.928 4 C -0.541 4.541 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.315 3.685 13 O -0.417 6.417 14 N -0.398 5.398 15 C 0.087 3.913 16 C -0.109 4.109 17 N -0.073 5.073 18 O 0.020 5.980 19 C -0.016 4.016 20 C -0.099 4.099 21 C -0.191 4.191 22 C -0.197 4.197 23 N -0.197 5.197 24 H 0.051 0.949 25 H 0.113 0.887 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.231 0.769 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.168 0.832 32 H 0.133 0.867 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.510 4.611 -21.594 22.132 hybrid contribution 0.040 0.057 0.596 0.600 sum -1.470 4.667 -20.998 21.561 Atomic orbital electron populations 1.21753 0.96468 0.99920 1.00921 1.18878 0.94184 0.96908 0.88945 0.92810 1.21107 1.31137 1.12883 0.88931 0.90732 1.24954 0.95085 0.95062 0.99129 1.69866 1.37014 1.23095 1.23675 0.86483 0.79291 0.79698 0.81531 1.20146 1.21376 1.20179 1.22066 0.78306 0.84267 0.83907 1.90543 1.37845 1.26796 1.86501 1.46275 1.55930 1.32869 1.04740 1.19323 0.99961 0.94556 0.77458 1.25959 0.89230 0.95100 1.00614 1.74726 1.20041 1.12913 0.99614 1.85286 1.40289 1.35276 1.37165 1.27708 0.83450 0.94614 0.95862 1.20325 0.99756 0.94712 0.95122 1.23191 0.99688 0.94478 1.01720 1.23194 1.00863 1.02143 0.93470 1.71911 1.28845 1.13216 1.05770 0.94878 0.88720 0.97065 0.92882 0.76859 0.89186 0.88707 0.83203 0.86723 0.87753 0.87417 0.86851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.87 37.15 0.33 -2.80 16 2 C 0.03 0.81 2.64 -92.93 -0.25 0.57 16 3 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 4 C -0.50 -14.46 8.37 -34.44 -0.29 -14.74 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -25.48 11.32 55.43 0.63 -24.85 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.52 12.29 7.15 -10.99 -0.08 12.21 16 13 O -0.54 -14.28 15.46 5.56 0.09 -14.19 16 14 N -0.74 -13.91 5.44 -61.47 -0.33 -14.25 16 15 C 0.21 3.51 6.30 -5.19 -0.03 3.48 16 16 C 0.16 2.48 7.59 -156.37 -1.19 1.30 16 17 N -0.37 -5.44 12.16 30.90 0.38 -5.06 16 18 O 0.08 1.00 11.08 18.09 0.20 1.20 16 19 C 0.20 2.27 7.97 -13.06 -0.10 2.17 16 20 C -0.08 -0.53 6.33 -91.73 -0.58 -1.11 16 21 C -0.15 -0.75 10.23 -26.73 -0.27 -1.02 16 22 C -0.16 -0.69 10.18 -26.70 -0.27 -0.96 16 23 N -0.46 -6.55 11.55 -9.87 -0.11 -6.66 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 26 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.40 6.87 7.88 -40.82 -0.32 6.55 16 29 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.15 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.11 0.50 8.01 -51.92 -0.42 0.09 16 35 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 308.52 15.07 4.65 4.65 Total: -1.00 -32.85 308.52 -6.67 -39.52 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.32 Total: 1.98 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -2.83 Total: 0.62 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.55 Total: -50.82 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.29 Total: -12.99 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.85 -6.67 -39.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597455285.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.696 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds