Wall clock time and date at job start Mon Mar 30 2020 04:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47213 * 2 1 4 4 C 1.50706 * 109.46813 * 119.99547 * 2 1 3 5 5 H 1.08001 * 119.99384 * 120.00259 * 4 2 1 6 6 C 1.37876 * 120.00204 * 299.99776 * 4 2 1 7 7 N 1.31516 * 119.99686 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99981 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46908 * 60.00418 * 8 6 4 10 10 H 1.48501 * 109.46919 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47042 * 300.00571 * 8 6 4 12 12 C 1.50697 * 109.47217 * 239.99604 * 2 1 3 13 13 O 1.21282 * 120.00185 * 239.99676 * 12 2 1 14 14 N 1.34773 * 120.00142 * 60.00841 * 12 2 1 15 15 C 1.46498 * 120.00153 * 180.02562 * 14 12 2 16 16 C 1.50706 * 109.47286 * 179.97438 * 15 14 12 17 17 N 1.29946 * 126.28876 * 270.02709 * 16 15 14 18 18 O 1.21297 * 110.25321 * 179.68528 * 17 16 15 19 19 C 1.33646 * 109.80764 * 0.46050 * 18 17 16 20 20 C 1.50706 * 126.54918 * 179.80385 * 19 18 17 21 21 C 1.53002 * 117.49668 * 59.69212 * 20 19 18 22 22 C 1.53000 * 60.02940 * 252.51929 * 21 20 19 23 23 N 1.31125 * 106.90001 * 359.54417 * 19 18 17 24 24 H 1.09002 * 109.47213 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47488 * 300.00188 * 1 2 3 26 26 H 1.09006 * 109.46962 * 60.00407 * 1 2 3 27 27 H 0.97001 * 119.99466 * 179.97438 * 7 6 4 28 28 H 0.97006 * 119.99888 * 359.97438 * 14 12 2 29 29 H 1.09002 * 109.47525 * 59.99312 * 15 14 12 30 30 H 1.09003 * 109.46918 * 299.99017 * 15 14 12 31 31 H 1.09000 * 115.55924 * 205.37617 * 20 19 18 32 32 H 1.09002 * 117.49918 * 145.01964 * 21 20 19 33 33 H 1.09002 * 117.49754 * 0.02562 * 21 20 19 34 34 H 1.09008 * 117.49673 * 107.47884 * 22 21 20 35 35 H 1.08999 * 117.49942 * 252.47315 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9427 0.8299 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 3.8062 -1.1207 4.0083 10 1 1.8258 -0.4203 5.2205 11 1 1.8256 -2.5201 4.0079 12 6 2.0323 -0.7105 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7069 -0.2500 -2.4545 15 6 2.1948 -0.9410 -3.6506 16 6 1.6922 -0.2309 -4.8812 17 7 0.5802 -0.4728 -5.5085 18 8 0.4621 0.2740 -6.4570 19 6 1.5246 1.0812 -6.5328 20 6 1.7681 2.1494 -7.5677 21 6 0.7403 3.2778 -7.6735 22 6 0.8136 2.2061 -8.7630 23 7 2.3120 0.7700 -5.5315 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 0.7081 1.1611 3.4843 28 1 1.1490 0.5385 -2.5436 29 1 1.8310 -1.9686 -3.6504 30 1 3.2848 -0.9414 -3.6507 31 1 2.8134 2.4023 -7.7455 32 1 1.1093 4.2731 -7.9211 33 1 -0.1118 3.2478 -6.9944 34 1 0.0098 1.4706 -8.8004 35 1 1.2305 2.4964 -9.7273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597455285.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:53 Heat of formation + Delta-G solvation = 31.332404 kcal Electronic energy + Delta-G solvation = -19256.685211 eV Core-core repulsion = 16065.111341 eV Total energy + Delta-G solvation = -3191.573870 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -46.86317 -40.70952 -38.40219 -37.52863 -35.83172 -35.52605 -33.31855 -32.45820 -28.89937 -27.22424 -26.08676 -24.91312 -24.02290 -23.27408 -21.74723 -21.27415 -19.33797 -18.82921 -18.37196 -17.88364 -17.40872 -16.97522 -16.39288 -16.22447 -15.55667 -15.04478 -14.72134 -14.47830 -14.27844 -13.84334 -13.43020 -13.27041 -13.13188 -12.99155 -12.73630 -12.63603 -12.42168 -12.29870 -12.23766 -12.19982 -12.02138 -11.51784 -11.09328 -10.84201 -10.63576 -10.39146 -10.24199 -8.16904 -6.27999 -0.07750 0.82371 1.41485 1.43280 1.51795 1.64869 1.79150 2.13991 2.39877 2.53243 2.69822 2.93236 3.12912 3.63233 3.71391 3.95035 4.00734 4.22819 4.31813 4.43404 4.52401 4.69061 4.77721 4.81652 4.88324 4.95289 4.96373 5.10437 5.23920 5.25975 5.43995 5.70666 5.87898 6.14445 6.53507 6.80581 6.97367 7.30354 7.42462 8.89157 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.042461 B = 0.003499 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.272046 B = 8000.908998 C = 8284.676355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.027 3.973 3 H 0.043 0.957 4 C -0.532 4.532 5 H 0.052 0.948 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.276 1.276 12 C 0.529 3.471 13 O -0.577 6.577 14 N -0.723 5.723 15 C 0.216 3.784 16 C 0.153 3.847 17 N -0.382 5.382 18 O 0.089 5.911 19 C 0.220 3.780 20 C -0.102 4.102 21 C -0.146 4.146 22 C -0.141 4.141 23 N -0.492 5.492 24 H 0.025 0.975 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.266 0.734 28 H 0.407 0.593 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.165 0.835 32 H 0.137 0.863 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.165 6.959 -24.017 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.006 3.994 3 H 0.061 0.939 4 C -0.570 4.570 5 H 0.070 0.930 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.784 3.216 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.201 1.201 12 C 0.319 3.681 13 O -0.455 6.455 14 N -0.378 5.378 15 C 0.091 3.909 16 C -0.119 4.119 17 N -0.088 5.088 18 O 0.026 5.974 19 C 0.001 3.999 20 C -0.122 4.122 21 C -0.184 4.184 22 C -0.178 4.178 23 N -0.225 5.225 24 H 0.044 0.956 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.242 0.758 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.183 0.817 32 H 0.155 0.845 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.921 5.731 -23.254 24.027 hybrid contribution 0.131 -0.189 0.957 0.984 sum -1.790 5.542 -22.297 23.045 Atomic orbital electron populations 1.21567 0.95090 0.99556 1.01559 1.18808 0.95288 0.96057 0.89252 0.93888 1.21263 1.31904 1.12936 0.90933 0.92967 1.25625 0.95097 0.95722 1.01519 1.69946 1.37063 1.23589 1.24497 0.85605 0.78720 0.78692 0.78594 1.20032 1.19904 1.20096 1.21597 0.78049 0.83708 0.84794 1.90522 1.39515 1.28275 1.87186 1.45941 1.54908 1.32674 1.04306 1.19264 0.99992 0.94515 0.77085 1.25613 0.89804 0.95905 1.00600 1.74700 1.20069 1.13763 1.00296 1.85258 1.40608 1.35157 1.36362 1.28565 0.81944 0.93987 0.95373 1.20718 1.01318 0.94585 0.95550 1.23331 0.98345 0.95181 1.01529 1.23351 0.99461 1.01262 0.93767 1.71897 1.29860 1.13690 1.07053 0.95609 0.90758 0.93634 0.92498 0.75785 0.89170 0.88643 0.81748 0.84520 0.88656 0.87741 0.84236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.87 71.98 0.64 -5.00 16 2 C 0.03 1.40 2.64 -12.29 -0.03 1.37 16 3 H 0.04 2.30 8.14 -2.39 -0.02 2.28 16 4 C -0.53 -31.24 8.37 25.60 0.21 -31.03 16 5 H 0.05 3.25 6.75 -2.91 -0.02 3.23 16 6 C 0.02 1.11 5.30 84.65 0.45 1.56 16 7 N -0.91 -51.77 11.32 21.45 0.24 -51.53 16 8 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 9 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 C 0.53 25.10 7.15 87.66 0.63 25.72 16 13 O -0.58 -31.07 15.46 -3.04 -0.05 -31.12 16 14 N -0.72 -27.00 5.44 -466.78 -2.54 -29.54 16 15 C 0.22 7.14 6.30 85.64 0.54 7.68 16 16 C 0.15 4.57 7.59 138.46 1.05 5.62 16 17 N -0.38 -11.02 12.16 -60.32 -0.73 -11.76 16 18 O 0.09 2.08 11.08 74.81 0.83 2.91 16 19 C 0.22 4.58 7.97 88.38 0.70 5.28 16 20 C -0.10 -1.11 6.33 -11.51 -0.07 -1.18 16 21 C -0.15 -1.00 10.23 30.60 0.31 -0.69 16 22 C -0.14 -0.77 10.18 30.62 0.31 -0.45 16 23 N -0.49 -13.46 11.55 -303.19 -3.50 -16.96 16 24 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 3.83 6.07 -2.38 -0.01 3.81 16 26 H 0.04 1.77 7.56 -2.38 -0.02 1.76 16 27 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 28 H 0.41 13.73 7.88 -92.70 -0.73 13.00 16 29 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 30 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 31 H 0.17 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.10 0.68 8.01 -2.38 -0.02 0.66 16 35 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16 Total: -1.00 -71.05 308.52 1.41 -69.64 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.39 Total: 12.15 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 4.74 Total: 8.88 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -6.53 Total: -109.79 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: 0.78 Total: -28.21 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.05 1.41 -69.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597455285.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.975 kcal (2) G-P(sol) polarization free energy of solvation -71.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds