Wall clock time and date at job start Mon Mar 30 2020 04:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47316 * 2 1 4 4 C 1.35672 * 116.99852 * 180.02562 * 3 2 1 5 5 C 1.39000 * 120.02482 * 180.02562 * 4 3 2 6 6 N 1.32066 * 120.08353 * 180.02562 * 5 4 3 7 7 C 1.32067 * 120.13863 * 359.65900 * 6 5 4 8 8 C 1.39043 * 120.04602 * 0.61719 * 7 6 5 9 9 N 1.39401 * 120.04024 * 179.68085 * 8 7 6 10 10 C 1.34780 * 120.00150 * 185.11763 * 9 8 7 11 11 O 1.21271 * 119.99825 * 354.91607 * 10 9 8 12 12 C 1.50695 * 119.99973 * 174.91007 * 10 9 8 13 13 H 1.08998 * 109.47554 * 300.00717 * 12 10 9 14 14 C 1.53005 * 109.47025 * 60.00441 * 12 10 9 15 15 C 1.50701 * 109.46927 * 180.02562 * 12 10 9 16 16 H 1.07991 * 120.00519 * 0.02562 * 15 12 10 17 17 C 1.37879 * 119.99709 * 180.02562 * 15 12 10 18 18 N 1.31521 * 120.00305 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00009 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.46968 * 59.99953 * 19 17 15 21 21 H 1.48497 * 109.47262 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46808 * 300.00175 * 19 17 15 23 23 N 1.32543 * 120.02771 * 359.97438 * 4 3 2 24 24 H 1.08996 * 109.47317 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47045 * 300.00048 * 1 2 3 26 26 H 1.09001 * 109.46631 * 60.00006 * 1 2 3 27 27 H 1.09005 * 109.47288 * 239.99693 * 2 1 3 28 28 H 1.08999 * 109.47130 * 120.00114 * 2 1 3 29 29 H 1.08006 * 119.95877 * 359.97264 * 5 4 3 30 30 H 1.07994 * 119.97516 * 180.29818 * 7 6 5 31 31 H 0.97003 * 120.00076 * 5.12264 * 9 8 7 32 32 H 1.09002 * 109.47222 * 59.99773 * 14 12 10 33 33 H 1.09000 * 109.46897 * 179.97438 * 14 12 10 34 34 H 1.09001 * 109.47218 * 299.99957 * 14 12 10 35 35 H 0.96993 * 120.00021 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3514 1.5249 -0.0005 5 6 3.8833 2.8091 0.0000 6 7 5.1925 2.9834 -0.0011 7 6 6.0005 1.9388 0.0042 8 6 5.4745 0.6517 -0.0021 9 7 6.3276 -0.4508 -0.0032 10 6 5.8209 -1.6948 -0.1134 11 8 4.6197 -1.8620 -0.1187 12 6 6.7469 -2.8779 -0.2302 13 1 7.3681 -2.7669 -1.1189 14 6 7.6397 -2.9511 1.0102 15 6 5.9346 -4.1426 -0.3403 16 1 4.8559 -4.0944 -0.3275 17 6 6.5689 -5.3612 -0.4574 18 7 7.8827 -5.4200 -0.4725 19 14 5.5622 -6.9287 -0.5947 20 1 4.6969 -6.8574 -1.7994 21 1 6.4747 -8.0947 -0.7084 22 1 4.7146 -7.0801 0.6153 23 7 4.1593 0.4742 -0.0005 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.2252 3.6655 0.0003 30 1 7.0706 2.0844 0.0082 31 1 7.2859 -0.3226 0.0753 32 1 7.0186 -3.0621 1.8990 33 1 8.3092 -3.8071 0.9259 34 1 8.2272 -2.0364 1.0895 35 1 8.3288 -6.2773 -0.5553 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598844614.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:48 Heat of formation + Delta-G solvation = -20.332247 kcal Electronic energy + Delta-G solvation = -19924.705550 eV Core-core repulsion = 16730.891333 eV Total energy + Delta-G solvation = -3193.814217 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.24637 -39.17618 -38.20168 -34.85626 -33.90688 -33.27054 -31.74563 -30.62360 -29.23753 -25.29771 -25.09961 -23.99037 -22.72540 -22.21997 -19.78266 -18.75685 -17.28353 -16.72200 -16.65454 -16.36893 -16.13269 -15.39628 -14.86331 -14.56199 -14.11805 -13.87725 -13.25538 -12.89560 -12.79947 -12.65408 -12.58729 -11.78226 -11.63797 -11.27669 -11.21106 -11.05851 -10.90352 -10.80749 -10.78329 -10.36896 -10.06719 -9.58149 -9.48766 -9.12014 -8.57514 -8.36009 -8.02158 -6.13234 -4.17415 1.01013 1.32713 2.94344 3.17320 3.30170 3.33308 3.39328 3.41888 3.99556 4.30699 4.39647 4.53524 4.62552 5.09161 5.10464 5.20343 5.30397 5.34902 5.50751 5.78138 5.89484 5.90474 5.98352 6.12983 6.45471 6.66345 6.67978 6.76977 7.09630 7.29479 7.34812 7.60732 7.71283 7.90360 8.03356 8.24328 8.89836 8.94028 9.48612 10.94264 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.020960 B = 0.005568 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.531656 B = 5027.800098 C = 6255.730984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.064 3.936 3 O -0.302 6.302 4 C 0.312 3.688 5 C -0.020 4.020 6 N -0.379 5.379 7 C -0.040 4.040 8 C 0.374 3.626 9 N -0.662 5.662 10 C 0.507 3.493 11 O -0.474 6.474 12 C 0.034 3.966 13 H 0.058 0.942 14 C -0.136 4.136 15 C -0.506 4.506 16 H 0.074 0.926 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.902 3.098 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 N -0.495 5.495 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.171 0.829 30 H 0.170 0.830 31 H 0.419 0.581 32 H 0.033 0.967 33 H 0.097 0.903 34 H 0.013 0.987 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.002 12.583 1.339 13.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 O -0.208 6.208 4 C 0.128 3.872 5 C -0.183 4.183 6 N -0.093 5.093 7 C -0.205 4.205 8 C 0.138 3.862 9 N -0.310 5.310 10 C 0.296 3.704 11 O -0.341 6.341 12 C 0.013 3.987 13 H 0.075 0.925 14 C -0.194 4.194 15 C -0.544 4.544 16 H 0.092 0.908 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.730 3.270 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.231 5.231 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.188 0.812 30 H 0.187 0.813 31 H 0.256 0.744 32 H 0.052 0.948 33 H 0.115 0.885 34 H 0.032 0.968 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.964 12.327 1.295 13.755 hybrid contribution 0.148 -1.098 -0.031 1.109 sum -5.816 11.229 1.264 12.709 Atomic orbital electron populations 1.21812 0.93135 1.02960 1.02815 1.22698 0.94294 0.80256 1.03856 1.86212 1.16001 1.31542 1.87027 1.20846 0.85077 0.90524 0.90736 1.22519 0.91893 0.94845 1.09063 1.68256 1.03059 1.32282 1.05679 1.22929 1.01175 0.86925 1.09487 1.19466 0.87655 0.88359 0.90728 1.44515 1.09964 1.04950 1.71540 1.22535 0.91160 0.82948 0.73767 1.90616 1.16247 1.83980 1.43257 1.18941 0.93329 0.89403 0.97060 0.92479 1.21796 0.99662 1.00886 0.97031 1.21048 0.93904 0.89280 1.50155 0.90773 1.24936 0.95032 0.99215 0.94866 1.69845 1.07390 1.25741 1.50398 0.86475 0.79774 0.81855 0.78877 1.20154 1.21272 1.20157 1.68124 1.03379 1.31965 1.19641 0.90198 0.91893 0.91868 0.90887 0.91041 0.81227 0.81309 0.74368 0.94775 0.88455 0.96814 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 37.16 0.38 -1.25 16 2 C 0.06 0.95 6.04 37.16 0.22 1.17 16 3 O -0.30 -4.59 10.13 -18.72 -0.19 -4.78 16 4 C 0.31 5.08 7.49 -16.96 -0.13 4.95 16 5 C -0.02 -0.28 11.17 -17.17 -0.19 -0.47 16 6 N -0.38 -5.41 10.48 -12.76 -0.13 -5.54 16 7 C -0.04 -0.55 11.07 -17.15 -0.19 -0.74 16 8 C 0.37 6.29 7.42 -154.39 -1.15 5.14 16 9 N -0.66 -11.22 5.32 -11.35 -0.06 -11.28 16 10 C 0.51 11.05 7.11 -10.99 -0.08 10.97 16 11 O -0.47 -11.79 13.75 5.57 0.08 -11.72 16 12 C 0.03 0.80 2.65 -92.92 -0.25 0.55 16 13 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 14 C -0.14 -2.92 8.87 37.16 0.33 -2.59 16 15 C -0.51 -13.75 8.38 -34.44 -0.29 -14.04 16 16 H 0.07 2.13 6.75 -52.49 -0.35 1.77 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 18 N -0.89 -24.20 11.32 55.43 0.63 -23.58 16 19 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 N -0.49 -9.27 6.96 -12.24 -0.09 -9.35 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 28 H 0.07 1.17 8.11 -51.93 -0.42 0.75 16 29 H 0.17 1.85 8.06 -52.48 -0.42 1.42 16 30 H 0.17 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.42 5.49 7.99 -40.82 -0.33 5.17 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 2.33 6.07 -51.93 -0.32 2.01 16 34 H 0.01 0.23 7.46 -51.93 -0.39 -0.16 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 304.20 15.07 4.58 4.58 Total: -1.00 -31.11 304.20 -5.95 -37.06 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.32 Total: 3.16 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -1.43 Total: 5.23 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.35 Total: -49.75 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.11 Total: -16.50 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.11 -5.95 -37.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598844614.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.726 kcal (2) G-P(sol) polarization free energy of solvation -31.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds