Wall clock time and date at job start Mon Mar 30 2020 04:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47316 * 2 1 4 4 C 1.35672 * 116.99852 * 180.02562 * 3 2 1 5 5 C 1.39000 * 120.02482 * 180.02562 * 4 3 2 6 6 N 1.32066 * 120.08353 * 180.02562 * 5 4 3 7 7 C 1.32067 * 120.13863 * 359.65900 * 6 5 4 8 8 C 1.39043 * 120.04602 * 0.61719 * 7 6 5 9 9 N 1.39401 * 120.04024 * 179.68085 * 8 7 6 10 10 C 1.34780 * 120.00150 * 185.11763 * 9 8 7 11 11 O 1.21271 * 119.99825 * 354.91607 * 10 9 8 12 12 C 1.50695 * 119.99973 * 174.91007 * 10 9 8 13 13 H 1.08998 * 109.47554 * 300.00717 * 12 10 9 14 14 C 1.53005 * 109.47025 * 60.00441 * 12 10 9 15 15 C 1.50701 * 109.46927 * 180.02562 * 12 10 9 16 16 H 1.07991 * 120.00519 * 0.02562 * 15 12 10 17 17 C 1.37879 * 119.99709 * 180.02562 * 15 12 10 18 18 N 1.31521 * 120.00305 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00009 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.46968 * 59.99953 * 19 17 15 21 21 H 1.48497 * 109.47262 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46808 * 300.00175 * 19 17 15 23 23 N 1.32543 * 120.02771 * 359.97438 * 4 3 2 24 24 H 1.08996 * 109.47317 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47045 * 300.00048 * 1 2 3 26 26 H 1.09001 * 109.46631 * 60.00006 * 1 2 3 27 27 H 1.09005 * 109.47288 * 239.99693 * 2 1 3 28 28 H 1.08999 * 109.47130 * 120.00114 * 2 1 3 29 29 H 1.08006 * 119.95877 * 359.97264 * 5 4 3 30 30 H 1.07994 * 119.97516 * 180.29818 * 7 6 5 31 31 H 0.97003 * 120.00076 * 5.12264 * 9 8 7 32 32 H 1.09002 * 109.47222 * 59.99773 * 14 12 10 33 33 H 1.09000 * 109.46897 * 179.97438 * 14 12 10 34 34 H 1.09001 * 109.47218 * 299.99957 * 14 12 10 35 35 H 0.96993 * 120.00021 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3514 1.5249 -0.0005 5 6 3.8833 2.8091 0.0000 6 7 5.1925 2.9834 -0.0011 7 6 6.0005 1.9388 0.0042 8 6 5.4745 0.6517 -0.0021 9 7 6.3276 -0.4508 -0.0032 10 6 5.8209 -1.6948 -0.1134 11 8 4.6197 -1.8620 -0.1187 12 6 6.7469 -2.8779 -0.2302 13 1 7.3681 -2.7669 -1.1189 14 6 7.6397 -2.9511 1.0102 15 6 5.9346 -4.1426 -0.3403 16 1 4.8559 -4.0944 -0.3275 17 6 6.5689 -5.3612 -0.4574 18 7 7.8827 -5.4200 -0.4725 19 14 5.5622 -6.9287 -0.5947 20 1 4.6969 -6.8574 -1.7994 21 1 6.4747 -8.0947 -0.7084 22 1 4.7146 -7.0801 0.6153 23 7 4.1593 0.4742 -0.0005 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.2252 3.6655 0.0003 30 1 7.0706 2.0844 0.0082 31 1 7.2859 -0.3226 0.0753 32 1 7.0186 -3.0621 1.8990 33 1 8.3092 -3.8071 0.9259 34 1 8.2272 -2.0364 1.0895 35 1 8.3288 -6.2773 -0.5553 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598844614.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:46 Heat of formation + Delta-G solvation = -42.529032 kcal Electronic energy + Delta-G solvation = -19925.668075 eV Core-core repulsion = 16730.891333 eV Total energy + Delta-G solvation = -3194.776742 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.49525 -40.69196 -39.45351 -36.31164 -35.81162 -34.58469 -32.99919 -32.33472 -30.49211 -27.24556 -26.41463 -25.29627 -24.10559 -23.58675 -21.34708 -20.06518 -18.67494 -18.35340 -17.88992 -17.73824 -17.55812 -16.98031 -16.49230 -16.22008 -15.37626 -15.25015 -14.99686 -14.51309 -13.96105 -13.76855 -13.57302 -13.51940 -13.02358 -12.81484 -12.78365 -12.62405 -12.58674 -12.30880 -12.21155 -12.03106 -12.01151 -11.11415 -10.98536 -10.90707 -10.52882 -9.93631 -9.25181 -8.17868 -6.28135 -0.20759 0.11663 1.40642 1.41070 1.49350 1.76244 1.81146 1.88979 2.42292 2.73853 3.07813 3.12682 3.40916 3.45687 4.00515 4.03086 4.20257 4.23967 4.39879 4.44376 4.71828 4.73985 4.89622 4.89709 4.96933 4.97689 5.13497 5.38056 5.45248 5.71919 5.80396 5.97650 6.06279 6.19473 6.48754 6.76720 6.85018 7.30818 7.42854 8.87533 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.020960 B = 0.005568 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.531656 B = 5027.800098 C = 6255.730984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 O -0.300 6.300 4 C 0.288 3.712 5 C 0.001 3.999 6 N -0.384 5.384 7 C -0.013 4.013 8 C 0.345 3.655 9 N -0.647 5.647 10 C 0.512 3.488 11 O -0.516 6.516 12 C 0.031 3.969 13 H 0.050 0.950 14 C -0.124 4.124 15 C -0.531 4.531 16 H 0.048 0.952 17 C 0.024 3.976 18 N -0.907 5.907 19 Si 0.953 3.047 20 H -0.278 1.278 21 H -0.274 1.274 22 H -0.277 1.277 23 N -0.533 5.533 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.204 0.796 30 H 0.212 0.788 31 H 0.437 0.563 32 H 0.022 0.978 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 14.362 1.529 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.007 4.007 3 O -0.206 6.206 4 C 0.104 3.896 5 C -0.162 4.162 6 N -0.098 5.098 7 C -0.177 4.177 8 C 0.110 3.890 9 N -0.296 5.296 10 C 0.301 3.699 11 O -0.386 6.386 12 C 0.009 3.991 13 H 0.068 0.932 14 C -0.182 4.182 15 C -0.570 4.570 16 H 0.066 0.934 17 C -0.176 4.176 18 N -0.546 5.546 19 Si 0.779 3.221 20 H -0.203 1.203 21 H -0.199 1.199 22 H -0.203 1.203 23 N -0.269 5.269 24 H 0.108 0.892 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.221 0.779 30 H 0.228 0.772 31 H 0.278 0.722 32 H 0.041 0.959 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.587 14.157 1.490 15.293 hybrid contribution 0.053 -1.530 -0.099 1.534 sum -5.534 12.628 1.391 13.857 Atomic orbital electron populations 1.21797 0.89809 1.04052 1.04051 1.22644 0.96778 0.79954 1.01290 1.86214 1.15785 1.31356 1.87200 1.21194 0.85239 0.90942 0.92193 1.23066 0.92314 0.94781 1.06022 1.68440 1.03132 1.31950 1.06268 1.23497 1.02975 0.85187 1.06060 1.19708 0.87222 0.89102 0.92937 1.43958 1.10945 1.03654 1.71062 1.22075 0.90161 0.84155 0.73506 1.90605 1.17607 1.84966 1.45455 1.18847 0.93392 0.89193 0.97622 0.93182 1.21614 0.98977 1.02188 0.95379 1.21209 0.93179 0.91533 1.51051 0.93356 1.25526 0.96035 1.01457 0.94574 1.69917 1.08009 1.26386 1.50316 0.85692 0.78702 0.79241 0.78486 1.20339 1.19903 1.20299 1.67954 1.04881 1.34037 1.20012 0.89194 0.90537 0.90642 0.93641 0.93511 0.77940 0.77182 0.72171 0.95909 0.90762 0.92227 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 10.28 71.98 0.74 -2.20 16 2 C 0.07 2.11 6.04 71.98 0.43 2.54 16 3 O -0.30 -9.05 10.13 -89.90 -0.91 -9.96 16 4 C 0.29 9.17 7.49 84.77 0.63 9.81 16 5 C 0.00 0.02 11.17 84.84 0.95 0.97 16 6 N -0.38 -9.71 10.48 -194.28 -2.04 -11.75 16 7 C -0.01 -0.32 11.07 84.85 0.94 0.62 16 8 C 0.34 11.20 7.42 132.81 0.99 12.18 16 9 N -0.65 -21.26 5.32 -308.21 -1.64 -22.89 16 10 C 0.51 22.68 7.11 87.66 0.62 23.31 16 11 O -0.52 -26.76 13.75 -3.00 -0.04 -26.80 16 12 C 0.03 1.47 2.65 -12.29 -0.03 1.43 16 13 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 14 C -0.12 -5.26 8.87 71.98 0.64 -4.62 16 15 C -0.53 -29.76 8.38 25.60 0.21 -29.55 16 16 H 0.05 2.91 6.75 -2.92 -0.02 2.89 16 17 C 0.02 1.30 5.30 84.65 0.45 1.74 16 18 N -0.91 -49.24 11.32 21.45 0.24 -49.00 16 19 Si 0.95 43.99 29.54 68.60 2.03 46.02 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 23 N -0.53 -20.08 6.96 -305.37 -2.13 -22.21 16 24 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.05 1.61 8.11 -2.38 -0.02 1.59 16 28 H 0.05 1.63 8.11 -2.39 -0.02 1.61 16 29 H 0.20 3.68 8.06 -2.91 -0.02 3.66 16 30 H 0.21 3.24 8.06 -2.91 -0.02 3.22 16 31 H 0.44 10.45 7.99 -92.71 -0.74 9.70 16 32 H 0.02 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.07 3.54 6.07 -2.39 -0.01 3.52 16 34 H 0.06 1.93 7.46 -2.39 -0.02 1.91 16 35 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -69.41 304.20 2.47 -66.94 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.37 Total: 13.41 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 6.57 Total: 16.24 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -5.56 Total: -105.85 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.95 Total: -36.76 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -69.41 2.47 -66.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598844614.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.412 kcal (2) G-P(sol) polarization free energy of solvation -69.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds