Wall clock time and date at job start Mon Mar 30 2020 04:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47476 * 2 1 4 4 C 1.50703 * 109.46715 * 240.00261 * 2 1 3 5 5 H 1.08004 * 119.99664 * 239.99664 * 4 2 1 6 6 C 1.37870 * 120.00370 * 59.99943 * 4 2 1 7 7 N 1.31514 * 119.99749 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00229 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47283 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47083 * 120.00230 * 8 6 4 11 11 H 1.48504 * 109.47392 * 240.00002 * 8 6 4 12 12 N 1.46501 * 109.47444 * 120.00537 * 2 1 3 13 13 C 1.34776 * 119.99496 * 275.00044 * 12 2 1 14 14 O 1.21626 * 120.00297 * 359.97438 * 13 12 2 15 15 C 1.47331 * 119.99973 * 179.97438 * 13 12 2 16 16 C 1.36679 * 126.19686 * 179.97438 * 15 13 12 17 17 N 1.34504 * 106.73189 * 179.97438 * 16 15 13 18 18 C 1.36621 * 107.93421 * 0.07447 * 17 16 15 19 19 N 1.29485 * 108.89964 * 359.90738 * 18 17 16 20 20 C 1.51097 * 122.84018 * 179.87399 * 18 17 16 21 21 O 1.43442 * 107.80556 * 345.42375 * 20 18 17 22 22 C 1.43193 * 113.98396 * 49.76503 * 21 20 18 23 23 C 1.46644 * 128.72086 * 180.13986 * 17 16 15 24 24 H 1.08999 * 109.47214 * 59.99494 * 1 2 3 25 25 H 1.09004 * 109.46844 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46961 * 299.99719 * 1 2 3 27 27 H 0.97001 * 120.00140 * 180.02562 * 7 6 4 28 28 H 0.97002 * 120.00305 * 94.99462 * 12 2 1 29 29 H 1.08002 * 126.63618 * 0.02562 * 16 15 13 30 30 H 1.09002 * 109.80380 * 105.01994 * 20 18 17 31 31 H 1.08997 * 109.80103 * 225.83378 * 20 18 17 32 32 H 1.08999 * 109.39751 * 169.48876 * 22 21 20 33 33 H 1.08998 * 109.42495 * 49.60958 * 22 21 20 34 34 H 1.08997 * 109.73658 * 283.22922 * 23 17 16 35 35 H 1.09000 * 109.73563 * 43.88340 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 3.1472 -2.2863 -3.6040 10 1 1.1675 -1.5865 -4.8166 11 1 3.1471 -0.1857 -4.8162 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8582 1.1618 2.4116 15 6 2.6378 -0.7130 3.5601 16 6 2.8166 -0.1579 4.7962 17 7 3.2749 -1.1362 5.5975 18 6 3.3754 -2.2773 4.8529 19 7 2.9948 -2.0227 3.6417 20 6 3.8628 -3.5883 5.4244 21 8 4.4864 -3.3119 6.6863 22 6 3.6940 -2.5025 7.5623 23 6 3.6240 -1.0686 7.0201 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7088 1.1615 -3.4843 28 1 2.2491 -1.6319 1.1525 29 1 2.6259 0.8677 5.0758 30 1 3.0199 -4.2642 5.5692 31 1 4.5863 -4.0406 4.7462 32 1 4.1456 -2.4934 8.5542 33 1 2.6873 -2.9156 7.6259 34 1 4.5923 -0.5825 7.1389 35 1 2.8615 -0.5071 7.5599 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599221904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:38 Heat of formation + Delta-G solvation = -17.642964 kcal Electronic energy + Delta-G solvation = -19691.387456 eV Core-core repulsion = 16497.689856 eV Total energy + Delta-G solvation = -3193.697601 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.46005 -38.85543 -38.07188 -34.65676 -34.41374 -32.22405 -30.75488 -30.06484 -28.73997 -26.23932 -25.15780 -24.07095 -23.03706 -20.61971 -19.81383 -19.17474 -18.13901 -16.90220 -16.83277 -16.04831 -15.71584 -15.30464 -15.08106 -14.79166 -14.31599 -14.11795 -13.76008 -13.63109 -12.99604 -12.83551 -12.28158 -12.12790 -11.73599 -11.59058 -11.01270 -10.88047 -10.66067 -10.62352 -10.22333 -10.19291 -10.13893 -9.76978 -9.13945 -8.93216 -8.47164 -8.42424 -7.73148 -6.03526 -4.11544 1.75346 2.34126 2.52440 3.22388 3.30615 3.37935 3.42271 3.78605 4.03637 4.18933 4.29981 4.39402 4.48525 4.55778 4.72294 4.91347 4.95172 5.12285 5.25999 5.28909 5.42684 5.74706 5.98975 6.32166 6.58727 6.88132 6.94519 7.08074 7.25369 7.57068 7.66080 7.77742 7.88982 8.04967 8.24318 8.83674 8.89848 9.26715 9.55927 11.02783 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.035966 B = 0.004106 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.336894 B = 6817.955906 C = 7378.455494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.262 3.738 3 H 0.049 0.951 4 C -0.529 4.529 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.690 5.690 13 C 0.586 3.414 14 O -0.561 6.561 15 C -0.047 4.047 16 C 0.034 3.966 17 N -0.458 5.458 18 C 0.156 3.844 19 N -0.439 5.439 20 C 0.153 3.847 21 O -0.372 6.372 22 C 0.047 3.953 23 C 0.070 3.930 24 H 0.090 0.910 25 H 0.026 0.974 26 H 0.014 0.986 27 H 0.263 0.737 28 H 0.397 0.603 29 H 0.190 0.810 30 H 0.085 0.915 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.898 -7.440 21.209 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.568 4.568 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.337 5.337 13 C 0.370 3.630 14 O -0.441 6.441 15 C -0.177 4.177 16 C -0.104 4.104 17 N -0.143 5.143 18 C -0.108 4.108 19 N -0.159 5.159 20 C 0.075 3.925 21 O -0.289 6.289 22 C -0.030 4.030 23 C -0.053 4.053 24 H 0.109 0.891 25 H 0.046 0.954 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.230 0.770 29 H 0.207 0.793 30 H 0.103 0.897 31 H 0.146 0.854 32 H 0.138 0.862 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.785 -7.082 20.579 22.284 hybrid contribution 0.133 -0.029 -0.262 0.295 sum 4.918 -7.112 20.318 22.081 Atomic orbital electron populations 1.22073 0.98404 0.99164 1.00848 1.18792 0.91093 0.94024 0.80019 0.93280 1.21290 1.32081 1.13127 0.90265 0.91911 1.24884 0.94885 0.94989 0.99015 1.69921 1.36198 1.22580 1.23636 0.86388 0.78577 0.79566 0.82546 1.19679 1.20927 1.20934 1.46356 1.63492 1.14044 1.09774 1.16896 0.78284 0.85765 0.82014 1.90742 1.53068 1.15258 1.85037 1.21195 1.10703 0.90522 0.95237 1.22418 1.02239 0.95128 0.90572 1.45143 1.49181 1.09713 1.10242 1.24140 1.07214 0.91240 0.88188 1.70243 1.14404 1.14662 1.16631 1.21247 0.99002 0.88426 0.83838 1.88192 1.43994 1.70339 1.26381 1.23001 0.97345 0.88067 0.94574 1.22766 1.03349 1.00484 0.78670 0.89113 0.95437 0.96650 0.92736 0.76962 0.79317 0.89667 0.85408 0.86246 0.91424 0.88604 0.87921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.26 37.16 0.34 -3.50 16 2 C 0.26 7.15 2.56 -69.08 -0.18 6.97 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.53 -14.83 8.73 -34.44 -0.30 -15.13 16 5 H 0.06 1.71 7.74 -52.48 -0.41 1.30 16 6 C 0.06 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -25.71 11.32 55.43 0.63 -25.08 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.37 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.69 -16.44 5.07 -56.04 -0.28 -16.73 16 13 C 0.59 13.44 7.78 -12.56 -0.10 13.35 16 14 O -0.56 -14.36 16.54 5.25 0.09 -14.27 16 15 C -0.05 -0.89 6.99 -82.89 -0.58 -1.46 16 16 C 0.03 0.51 11.38 -16.94 -0.19 0.32 16 17 N -0.46 -5.52 3.12 -113.31 -0.35 -5.87 16 18 C 0.16 2.10 7.79 -154.60 -1.20 0.90 16 19 N -0.44 -7.59 10.99 -6.95 -0.08 -7.67 16 20 C 0.15 1.43 7.29 36.20 0.26 1.69 16 21 O -0.37 -3.22 10.79 -35.23 -0.38 -3.60 16 22 C 0.05 0.27 6.82 37.39 0.25 0.52 16 23 C 0.07 0.47 7.28 -3.73 -0.03 0.45 16 24 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.40 8.85 8.25 -40.82 -0.34 8.51 16 29 H 0.19 2.41 8.06 -52.49 -0.42 1.99 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.13 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.12 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 300.94 15.07 4.54 4.54 Total: -1.00 -34.84 300.94 -7.06 -41.90 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.39 Total: 4.61 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -1.81 Total: 5.81 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.09 Total: -55.35 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.29 Total: -17.87 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.84 -7.06 -41.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599221904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.259 kcal (2) G-P(sol) polarization free energy of solvation -34.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds