Wall clock time and date at job start Mon Mar 30 2020 04:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47476 * 2 1 4 4 C 1.50703 * 109.46715 * 240.00261 * 2 1 3 5 5 H 1.08004 * 119.99664 * 239.99664 * 4 2 1 6 6 C 1.37870 * 120.00370 * 59.99943 * 4 2 1 7 7 N 1.31514 * 119.99749 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00229 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47283 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47083 * 120.00230 * 8 6 4 11 11 H 1.48504 * 109.47392 * 240.00002 * 8 6 4 12 12 N 1.46501 * 109.47444 * 120.00537 * 2 1 3 13 13 C 1.34776 * 119.99496 * 275.00044 * 12 2 1 14 14 O 1.21626 * 120.00297 * 359.97438 * 13 12 2 15 15 C 1.47331 * 119.99973 * 179.97438 * 13 12 2 16 16 C 1.36679 * 126.19686 * 179.97438 * 15 13 12 17 17 N 1.34504 * 106.73189 * 179.97438 * 16 15 13 18 18 C 1.36621 * 107.93421 * 0.07447 * 17 16 15 19 19 N 1.29485 * 108.89964 * 359.90738 * 18 17 16 20 20 C 1.51097 * 122.84018 * 179.87399 * 18 17 16 21 21 O 1.43442 * 107.80556 * 345.42375 * 20 18 17 22 22 C 1.43193 * 113.98396 * 49.76503 * 21 20 18 23 23 C 1.46644 * 128.72086 * 180.13986 * 17 16 15 24 24 H 1.08999 * 109.47214 * 59.99494 * 1 2 3 25 25 H 1.09004 * 109.46844 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46961 * 299.99719 * 1 2 3 27 27 H 0.97001 * 120.00140 * 180.02562 * 7 6 4 28 28 H 0.97002 * 120.00305 * 94.99462 * 12 2 1 29 29 H 1.08002 * 126.63618 * 0.02562 * 16 15 13 30 30 H 1.09002 * 109.80380 * 105.01994 * 20 18 17 31 31 H 1.08997 * 109.80103 * 225.83378 * 20 18 17 32 32 H 1.08999 * 109.39751 * 169.48876 * 22 21 20 33 33 H 1.08998 * 109.42495 * 49.60958 * 22 21 20 34 34 H 1.08997 * 109.73658 * 283.22922 * 23 17 16 35 35 H 1.09000 * 109.73563 * 43.88340 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 3.1472 -2.2863 -3.6040 10 1 1.1675 -1.5865 -4.8166 11 1 3.1471 -0.1857 -4.8162 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8582 1.1618 2.4116 15 6 2.6378 -0.7130 3.5601 16 6 2.8166 -0.1579 4.7962 17 7 3.2749 -1.1362 5.5975 18 6 3.3754 -2.2773 4.8529 19 7 2.9948 -2.0227 3.6417 20 6 3.8628 -3.5883 5.4244 21 8 4.4864 -3.3119 6.6863 22 6 3.6940 -2.5025 7.5623 23 6 3.6240 -1.0686 7.0201 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7088 1.1615 -3.4843 28 1 2.2491 -1.6319 1.1525 29 1 2.6259 0.8677 5.0758 30 1 3.0199 -4.2642 5.5692 31 1 4.5863 -4.0406 4.7462 32 1 4.1456 -2.4934 8.5542 33 1 2.6873 -2.9156 7.6259 34 1 4.5923 -0.5825 7.1389 35 1 2.8615 -0.5071 7.5599 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599221904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:34 Heat of formation + Delta-G solvation = -43.906646 kcal Electronic energy + Delta-G solvation = -19692.526335 eV Core-core repulsion = 16497.689856 eV Total energy + Delta-G solvation = -3194.836480 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.52733 -40.34394 -39.10720 -36.70885 -35.32553 -34.26021 -31.92155 -30.99386 -30.49502 -27.39579 -27.22357 -24.86241 -24.37621 -22.41695 -21.11892 -20.55600 -19.42352 -18.33413 -17.62624 -17.33144 -17.11817 -16.83924 -16.18839 -16.02226 -15.77346 -15.46164 -14.97211 -14.82682 -14.51793 -14.29060 -13.84211 -13.61589 -13.01848 -12.92502 -12.80485 -12.73694 -12.29534 -12.24771 -12.12895 -11.54402 -11.15618 -11.11138 -10.96539 -10.74410 -10.60875 -9.87211 -9.49232 -8.18130 -6.35573 0.52765 1.27690 1.44128 1.44512 1.46545 1.58246 2.36306 2.54458 2.62397 2.68017 3.03459 3.11924 3.40549 3.66018 3.98075 4.02339 4.16361 4.31850 4.39145 4.55507 4.66959 4.71719 4.74075 4.89173 4.91184 5.06675 5.32104 5.42156 5.59836 5.65318 5.73207 5.88812 6.00078 6.08007 6.65679 6.70688 7.00929 7.30030 7.49493 8.88884 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.035966 B = 0.004106 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.336894 B = 6817.955906 C = 7378.455494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.269 3.731 3 H 0.003 0.997 4 C -0.549 4.549 5 H 0.067 0.933 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.976 3.024 9 H -0.264 1.264 10 H -0.275 1.275 11 H -0.280 1.280 12 N -0.693 5.693 13 C 0.584 3.416 14 O -0.599 6.599 15 C -0.096 4.096 16 C 0.057 3.943 17 N -0.451 5.451 18 C 0.164 3.836 19 N -0.474 5.474 20 C 0.156 3.844 21 O -0.381 6.381 22 C 0.044 3.956 23 C 0.060 3.940 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.013 0.987 27 H 0.267 0.733 28 H 0.404 0.596 29 H 0.208 0.792 30 H 0.108 0.892 31 H 0.135 0.865 32 H 0.155 0.845 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.859 -9.196 23.209 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.165 3.835 3 H 0.021 0.979 4 C -0.587 4.587 5 H 0.085 0.915 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.800 3.200 9 H -0.188 1.188 10 H -0.200 1.200 11 H -0.206 1.206 12 N -0.339 5.339 13 C 0.371 3.629 14 O -0.482 6.482 15 C -0.224 4.224 16 C -0.084 4.084 17 N -0.133 5.133 18 C -0.102 4.102 19 N -0.195 5.195 20 C 0.078 3.922 21 O -0.299 6.299 22 C -0.033 4.033 23 C -0.060 4.060 24 H 0.090 0.910 25 H 0.056 0.944 26 H 0.032 0.968 27 H 0.076 0.924 28 H 0.238 0.762 29 H 0.225 0.775 30 H 0.125 0.875 31 H 0.152 0.848 32 H 0.172 0.828 33 H 0.095 0.905 34 H 0.127 0.873 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.761 -8.868 22.634 24.983 hybrid contribution -0.128 0.537 -0.694 0.887 sum 5.632 -8.331 21.941 24.136 Atomic orbital electron populations 1.21886 0.97982 0.99381 0.99778 1.18450 0.91397 0.91990 0.81618 0.97935 1.21538 1.32722 1.13521 0.90935 0.91473 1.25807 0.94780 0.95601 1.02234 1.70052 1.36910 1.23821 1.24669 0.85241 0.78188 0.78437 0.78121 1.18754 1.20009 1.20579 1.46154 1.64105 1.14222 1.09441 1.17437 0.77152 0.85460 0.82815 1.90693 1.54715 1.16916 1.85842 1.20633 1.14898 0.91953 0.94896 1.22605 1.00055 0.96146 0.89644 1.45483 1.47385 1.08386 1.12062 1.24940 1.04993 0.92929 0.87320 1.70116 1.16146 1.14091 1.19147 1.21454 0.99960 0.86449 0.84367 1.88196 1.44800 1.70846 1.26011 1.23328 0.98069 0.86635 0.95252 1.23300 1.04989 1.02183 0.75545 0.90961 0.94386 0.96787 0.92381 0.76156 0.77523 0.87478 0.84768 0.82758 0.90510 0.87294 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.19 9.26 71.98 0.67 -6.52 16 2 C 0.27 15.29 2.56 44.25 0.11 15.40 16 3 H 0.00 0.18 7.58 -2.39 -0.02 0.16 16 4 C -0.55 -31.48 8.73 25.60 0.22 -31.25 16 5 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -54.38 11.32 21.44 0.24 -54.14 16 8 Si 0.98 44.00 29.54 68.60 2.03 46.03 16 9 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 N -0.69 -34.42 5.07 -449.45 -2.28 -36.70 16 13 C 0.58 27.94 7.78 86.64 0.67 28.62 16 14 O -0.60 -32.16 16.54 -4.11 -0.07 -32.23 16 15 C -0.10 -3.65 6.99 40.53 0.28 -3.37 16 16 C 0.06 1.63 11.38 83.92 0.95 2.59 16 17 N -0.45 -9.75 3.12 -512.41 -1.60 -11.35 16 18 C 0.16 4.12 7.79 138.04 1.08 5.20 16 19 N -0.47 -16.32 10.99 -175.89 -1.93 -18.26 16 20 C 0.16 2.49 7.29 71.36 0.52 3.01 16 21 O -0.38 -5.24 10.79 -148.98 -1.61 -6.84 16 22 C 0.04 0.30 6.82 72.13 0.49 0.79 16 23 C 0.06 0.57 7.28 86.50 0.63 1.20 16 24 H 0.07 4.21 6.07 -2.39 -0.01 4.19 16 25 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 28 H 0.40 18.68 8.25 -92.71 -0.76 17.91 16 29 H 0.21 5.01 8.06 -2.91 -0.02 4.99 16 30 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.15 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.08 0.44 8.09 -2.39 -0.02 0.42 16 34 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -78.79 300.94 1.22 -77.58 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.35 Total: 18.90 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 6.08 Total: 17.00 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -5.57 Total: -120.44 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -1.68 Total: -39.07 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -78.79 1.22 -77.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599221904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.669 kcal (2) G-P(sol) polarization free energy of solvation -78.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds