Wall clock time and date at job start Mon Mar 30 2020 06:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00581 * 2 1 4 4 H 1.48501 * 109.46940 * 240.00252 * 3 2 1 5 5 H 1.48503 * 109.46981 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47465 * 119.99832 * 3 2 1 7 7 C 1.37880 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00469 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99851 * 0.02562 * 7 2 1 10 10 C 1.53490 * 114.20488 * 179.97438 * 9 7 2 11 11 N 1.47073 * 87.98485 * 139.65437 * 10 9 7 12 12 C 1.34776 * 136.05647 * 152.84108 * 11 10 9 13 13 O 1.21281 * 120.00249 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99570 * 179.97438 * 12 11 10 15 15 C 1.54020 * 111.85945 * 298.98713 * 14 12 11 16 16 C 1.54837 * 104.47006 * 215.05906 * 15 14 12 17 17 C 1.54863 * 102.73456 * 37.58066 * 16 15 14 18 18 C 1.54339 * 104.13453 * 321.28607 * 17 16 15 19 19 H 1.08998 * 111.40067 * 146.69451 * 18 17 16 20 20 O 1.43811 * 109.15926 * 270.10912 * 18 17 16 21 21 C 1.44307 * 107.19503 * 140.51129 * 20 18 17 22 22 C 1.54623 * 112.66860 * 62.30960 * 14 12 11 23 23 C 1.47064 * 87.88166 * 333.09827 * 11 10 9 24 24 H 0.97002 * 120.00030 * 0.02562 * 1 2 3 25 25 H 1.08999 * 113.28169 * 46.93497 * 9 7 2 26 26 H 1.09008 * 113.47229 * 24.87719 * 10 9 7 27 27 H 1.09002 * 113.52359 * 254.44030 * 10 9 7 28 28 H 1.09004 * 110.43384 * 96.31709 * 15 14 12 29 29 H 1.08998 * 110.53951 * 333.85857 * 15 14 12 30 30 H 1.08993 * 110.75907 * 155.89388 * 16 15 14 31 31 H 1.09003 * 110.75813 * 279.27119 * 16 15 14 32 32 H 1.08997 * 110.50123 * 79.95165 * 17 16 15 33 33 H 1.09001 * 110.49952 * 202.62504 * 17 16 15 34 34 H 1.08997 * 110.61592 * 78.51425 * 21 20 18 35 35 H 1.09004 * 110.61898 * 201.35777 * 21 20 18 36 36 H 1.09002 * 110.90413 * 218.30126 * 22 14 12 37 37 H 1.09002 * 110.90614 * 341.90490 * 22 14 12 38 38 H 1.08999 * 113.46638 * 141.67720 * 23 11 10 39 39 H 1.09001 * 113.47175 * 272.11799 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.1485 -3.7443 0.0005 11 7 1.2096 -4.3575 0.9521 12 6 0.8342 -5.6114 1.2735 13 8 1.3282 -6.5584 0.6991 14 6 -0.1987 -5.8366 2.3475 15 6 0.2627 -5.2885 3.7109 16 6 -0.3171 -6.2848 4.7447 17 6 -0.1631 -7.6489 4.0278 18 6 -0.5012 -7.3403 2.5539 19 1 0.0820 -7.9610 1.8737 20 8 -1.9130 -7.5186 2.3462 21 6 -2.3524 -6.4598 1.4697 22 6 -1.5714 -5.2195 1.9929 23 6 0.8559 -3.0001 1.3939 24 1 -0.4850 0.8401 -0.0004 25 1 0.4436 -2.5306 -0.7313 26 1 3.1382 -3.5659 0.4212 27 1 2.1855 -4.2540 -0.9623 28 1 -0.1420 -4.2900 3.8764 29 1 1.3510 -5.2715 3.7677 30 1 0.2629 -6.2655 5.6672 31 1 -1.3671 -6.0688 4.9426 32 1 0.8604 -8.0133 4.1164 33 1 -0.8648 -8.3761 4.4362 34 1 -2.0899 -6.6837 0.4357 35 1 -3.4266 -6.3024 1.5663 36 1 -2.0429 -4.7867 2.8752 37 1 -1.4710 -4.4755 1.2027 38 1 -0.2047 -2.8775 1.6131 39 1 1.4978 -2.6214 2.1893 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600860564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:49 Heat of formation + Delta-G solvation = -53.557169 kcal Electronic energy + Delta-G solvation = -21102.444727 eV Core-core repulsion = 18010.730112 eV Total energy + Delta-G solvation = -3091.714614 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.87016 -38.88281 -36.92600 -35.24466 -32.79012 -31.98992 -29.20329 -27.86840 -27.21659 -25.16183 -25.01769 -22.49172 -21.52814 -20.69302 -19.60617 -18.13937 -17.01660 -16.54716 -15.93339 -15.49444 -15.41475 -14.80302 -14.70619 -14.43578 -14.29756 -13.41607 -13.17465 -12.69696 -12.46431 -12.32926 -11.87641 -11.62783 -11.40645 -11.33493 -11.16421 -11.11079 -10.99835 -10.94853 -10.89706 -10.74966 -10.48759 -10.38349 -9.67067 -9.47567 -9.25540 -8.97977 -8.62970 -7.93846 -6.23476 -4.29166 3.04248 3.21844 3.27620 3.29222 3.46142 3.87043 4.28907 4.43664 4.55271 4.77113 5.02749 5.06411 5.07888 5.13849 5.20625 5.38589 5.49935 5.63625 5.74457 5.76224 5.87578 5.91067 5.96292 6.00662 6.06376 6.08471 6.12379 6.16641 6.24584 6.28084 6.39097 6.51200 6.60137 6.75548 7.00790 7.49015 7.74047 8.12214 8.44302 8.68077 8.74634 9.37954 10.86262 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.031232 B = 0.005052 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.306398 B = 5540.793430 C = 5622.842544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.070 3.930 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.035 3.965 10 C 0.099 3.901 11 N -0.638 5.638 12 C 0.550 3.450 13 O -0.563 6.563 14 C -0.107 4.107 15 C -0.105 4.105 16 C -0.120 4.120 17 C -0.123 4.123 18 C 0.088 3.912 19 H 0.095 0.905 20 O -0.375 6.375 21 C 0.048 3.952 22 C -0.140 4.140 23 C 0.100 3.900 24 H 0.265 0.735 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.049 -8.495 7.536 11.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.016 3.984 10 C -0.023 4.023 11 N -0.370 5.370 12 C 0.339 3.661 13 O -0.443 6.443 14 C -0.110 4.110 15 C -0.143 4.143 16 C -0.158 4.158 17 C -0.161 4.161 18 C 0.030 3.970 19 H 0.113 0.887 20 O -0.294 6.294 21 C -0.028 4.028 22 C -0.178 4.178 23 C -0.023 4.023 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.148 -9.236 7.382 12.236 hybrid contribution 0.562 1.207 -0.044 1.332 sum -2.586 -8.029 7.338 11.180 Atomic orbital electron populations 1.69930 1.06071 1.27296 1.48966 1.25013 0.94866 0.99381 0.94157 0.86595 0.79613 0.82615 0.78862 1.20025 1.21193 1.20058 1.20862 0.92984 0.89522 1.52272 0.91886 1.20291 0.94739 0.91176 0.92245 1.23371 0.94403 0.93137 0.91393 1.49940 1.42154 1.04773 1.40162 1.19511 0.82608 0.81314 0.82701 1.90619 1.58129 1.40898 1.54692 1.22453 0.95585 0.97276 0.95711 1.22315 1.01090 0.99383 0.91500 1.22479 1.01283 0.94356 0.97668 1.22516 1.01781 0.97990 0.93806 1.23373 0.82707 0.93598 0.97341 0.88719 1.88799 1.22495 1.50426 1.67672 1.23653 0.99454 0.85659 0.94074 1.23351 0.92988 0.98611 1.02833 1.23592 0.99795 0.76730 1.02140 0.92541 0.91429 0.90854 0.92465 0.90300 0.91215 0.91146 0.91010 0.90525 0.90398 0.92053 0.88884 0.89360 0.89282 0.92099 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.46 13.26 55.43 0.74 -22.72 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 19.64 29.54 -169.99 -5.02 14.62 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.52 -12.85 8.83 -34.43 -0.30 -13.16 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.03 0.79 3.77 -91.39 -0.34 0.44 16 10 C 0.10 2.03 8.19 -8.51 -0.07 1.96 16 11 N -0.64 -12.64 3.57 -185.40 -0.66 -13.30 16 12 C 0.55 10.69 6.77 -10.99 -0.07 10.62 16 13 O -0.56 -12.57 16.25 5.56 0.09 -12.47 16 14 C -0.11 -1.68 0.61 -153.35 -0.09 -1.77 16 15 C -0.11 -1.43 5.27 -25.23 -0.13 -1.56 16 16 C -0.12 -1.37 6.88 -24.78 -0.17 -1.54 16 17 C -0.12 -1.52 6.51 -25.05 -0.16 -1.69 16 18 C 0.09 1.34 3.85 -25.10 -0.10 1.24 16 19 H 0.10 1.63 6.74 -51.93 -0.35 1.28 16 20 O -0.37 -5.72 11.11 -35.23 -0.39 -6.11 16 21 C 0.05 0.66 7.75 38.55 0.30 0.96 16 22 C -0.14 -2.02 5.74 -24.48 -0.14 -2.16 16 23 C 0.10 2.01 7.23 -8.65 -0.06 1.94 16 24 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 25 H 0.07 1.68 8.11 -51.93 -0.42 1.26 16 26 H 0.07 1.45 8.10 -51.92 -0.42 1.03 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.08 1.04 7.71 -51.93 -0.40 0.64 16 29 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.13 7.62 -51.93 -0.40 0.73 16 37 H 0.09 1.41 6.61 -51.93 -0.34 1.07 16 38 H 0.06 1.20 6.82 -51.93 -0.35 0.85 16 39 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 LS Contribution 312.71 15.07 4.71 4.71 Total: -1.00 -27.95 312.71 -8.01 -35.96 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.02 Total: 2.35 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -1.45 Total: -3.04 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.07 Total: -36.03 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.30 Total: -18.59 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.95 -8.01 -35.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600860564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.596 kcal (2) G-P(sol) polarization free energy of solvation -27.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds