Wall clock time and date at job start Mon Mar 30 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00581 * 2 1 4 4 H 1.48501 * 109.46940 * 240.00252 * 3 2 1 5 5 H 1.48503 * 109.46981 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47465 * 119.99832 * 3 2 1 7 7 C 1.37880 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00469 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99851 * 0.02562 * 7 2 1 10 10 C 1.53490 * 114.20488 * 179.97438 * 9 7 2 11 11 N 1.47073 * 87.98485 * 139.65437 * 10 9 7 12 12 C 1.34776 * 136.05647 * 152.84108 * 11 10 9 13 13 O 1.21281 * 120.00249 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99570 * 179.97438 * 12 11 10 15 15 C 1.54020 * 111.85945 * 298.98713 * 14 12 11 16 16 C 1.54837 * 104.47006 * 215.05906 * 15 14 12 17 17 C 1.54863 * 102.73456 * 37.58066 * 16 15 14 18 18 C 1.54339 * 104.13453 * 321.28607 * 17 16 15 19 19 H 1.08998 * 111.40067 * 146.69451 * 18 17 16 20 20 O 1.43811 * 109.15926 * 270.10912 * 18 17 16 21 21 C 1.44307 * 107.19503 * 140.51129 * 20 18 17 22 22 C 1.54623 * 112.66860 * 62.30960 * 14 12 11 23 23 C 1.47064 * 87.88166 * 333.09827 * 11 10 9 24 24 H 0.97002 * 120.00030 * 0.02562 * 1 2 3 25 25 H 1.08999 * 113.28169 * 46.93497 * 9 7 2 26 26 H 1.09008 * 113.47229 * 24.87719 * 10 9 7 27 27 H 1.09002 * 113.52359 * 254.44030 * 10 9 7 28 28 H 1.09004 * 110.43384 * 96.31709 * 15 14 12 29 29 H 1.08998 * 110.53951 * 333.85857 * 15 14 12 30 30 H 1.08993 * 110.75907 * 155.89388 * 16 15 14 31 31 H 1.09003 * 110.75813 * 279.27119 * 16 15 14 32 32 H 1.08997 * 110.50123 * 79.95165 * 17 16 15 33 33 H 1.09001 * 110.49952 * 202.62504 * 17 16 15 34 34 H 1.08997 * 110.61592 * 78.51425 * 21 20 18 35 35 H 1.09004 * 110.61898 * 201.35777 * 21 20 18 36 36 H 1.09002 * 110.90413 * 218.30126 * 22 14 12 37 37 H 1.09002 * 110.90614 * 341.90490 * 22 14 12 38 38 H 1.08999 * 113.46638 * 141.67720 * 23 11 10 39 39 H 1.09001 * 113.47175 * 272.11799 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.1485 -3.7443 0.0005 11 7 1.2096 -4.3575 0.9521 12 6 0.8342 -5.6114 1.2735 13 8 1.3282 -6.5584 0.6991 14 6 -0.1987 -5.8366 2.3475 15 6 0.2627 -5.2885 3.7109 16 6 -0.3171 -6.2848 4.7447 17 6 -0.1631 -7.6489 4.0278 18 6 -0.5012 -7.3403 2.5539 19 1 0.0820 -7.9610 1.8737 20 8 -1.9130 -7.5186 2.3462 21 6 -2.3524 -6.4598 1.4697 22 6 -1.5714 -5.2195 1.9929 23 6 0.8559 -3.0001 1.3939 24 1 -0.4850 0.8401 -0.0004 25 1 0.4436 -2.5306 -0.7313 26 1 3.1382 -3.5659 0.4212 27 1 2.1855 -4.2540 -0.9623 28 1 -0.1420 -4.2900 3.8764 29 1 1.3510 -5.2715 3.7677 30 1 0.2629 -6.2655 5.6672 31 1 -1.3671 -6.0688 4.9426 32 1 0.8604 -8.0133 4.1164 33 1 -0.8648 -8.3761 4.4362 34 1 -2.0899 -6.6837 0.4357 35 1 -3.4266 -6.3024 1.5663 36 1 -2.0429 -4.7867 2.8752 37 1 -1.4710 -4.4755 1.2027 38 1 -0.2047 -2.8775 1.6131 39 1 1.4978 -2.6214 2.1893 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600860564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:48 Heat of formation + Delta-G solvation = -69.966772 kcal Electronic energy + Delta-G solvation = -21103.156300 eV Core-core repulsion = 18010.730112 eV Total energy + Delta-G solvation = -3092.426188 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.18721 -40.41415 -38.56719 -36.35067 -34.66986 -33.21508 -30.85923 -29.00684 -28.40347 -26.94864 -26.67721 -23.68047 -23.02926 -21.71474 -21.13681 -19.60541 -18.76029 -18.07962 -17.43798 -16.68163 -16.64367 -16.56215 -16.10943 -15.80177 -15.54905 -15.04285 -14.48917 -14.17122 -13.84166 -13.65491 -13.30280 -13.22795 -13.11318 -12.76484 -12.65015 -12.46584 -12.24865 -12.20604 -12.13575 -11.98185 -11.97056 -11.53077 -11.35113 -11.06748 -10.80858 -10.58176 -10.47099 -9.61690 -8.16573 -6.27531 1.49263 1.49389 1.51148 1.57582 1.90524 2.46444 2.72056 3.13763 3.28428 3.37208 3.52214 3.80135 3.98000 4.08188 4.12795 4.22306 4.31045 4.35335 4.40004 4.50844 4.61345 4.67512 4.68778 4.73144 4.77111 4.84123 4.87812 4.91405 4.97158 5.01903 5.06026 5.11259 5.14215 5.34833 5.58617 5.80840 5.84756 6.22506 6.80237 6.84099 7.07421 7.42502 8.93120 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.031232 B = 0.005052 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.306398 B = 5540.793430 C = 5622.842544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.529 4.529 8 H 0.065 0.935 9 C 0.024 3.976 10 C 0.102 3.898 11 N -0.637 5.637 12 C 0.545 3.455 13 O -0.596 6.596 14 C -0.108 4.108 15 C -0.104 4.104 16 C -0.109 4.109 17 C -0.119 4.119 18 C 0.083 3.917 19 H 0.067 0.933 20 O -0.379 6.379 21 C 0.046 3.954 22 C -0.135 4.135 23 C 0.119 3.881 24 H 0.265 0.735 25 H 0.038 0.962 26 H 0.084 0.916 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.247 -8.204 9.484 12.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.568 4.568 8 H 0.084 0.916 9 C 0.004 3.996 10 C -0.020 4.020 11 N -0.369 5.369 12 C 0.336 3.664 13 O -0.479 6.479 14 C -0.111 4.111 15 C -0.142 4.142 16 C -0.146 4.146 17 C -0.156 4.156 18 C 0.025 3.975 19 H 0.085 0.915 20 O -0.298 6.298 21 C -0.030 4.030 22 C -0.173 4.173 23 C -0.003 4.003 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.341 -8.950 9.335 13.357 hybrid contribution 0.633 1.059 -0.747 1.442 sum -2.708 -7.891 8.589 11.974 Atomic orbital electron populations 1.70033 1.07323 1.27939 1.50103 1.25706 0.95545 1.02360 0.93960 0.85639 0.78371 0.78839 0.78985 1.19886 1.21247 1.19210 1.21150 0.93280 0.90433 1.51886 0.91647 1.20167 0.94511 0.91599 0.93292 1.23280 0.94743 0.92216 0.91781 1.49929 1.41982 1.05059 1.39965 1.20249 0.82799 0.80411 0.82964 1.90598 1.59479 1.41728 1.56105 1.22502 0.94995 0.98132 0.95455 1.22353 1.00766 1.00383 0.90684 1.22468 1.02144 0.92446 0.97591 1.22526 1.02399 0.99103 0.91601 1.23370 0.82535 0.92704 0.98882 0.91540 1.88795 1.22290 1.51000 1.67747 1.23764 1.01090 0.85029 0.93148 1.23364 0.92426 0.98326 1.03200 1.23307 1.00074 0.76399 1.00531 0.92598 0.94338 0.89745 0.92833 0.89576 0.92034 0.88807 0.89986 0.90049 0.89141 0.93553 0.85924 0.86999 0.91121 0.91730 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.65 13.26 21.45 0.28 -48.37 16 2 C 0.02 1.26 5.46 84.66 0.46 1.72 16 3 Si 0.96 39.80 29.54 68.60 2.03 41.83 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.29 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.53 -26.19 8.83 25.60 0.23 -25.96 16 8 H 0.07 3.14 7.81 -2.91 -0.02 3.11 16 9 C 0.02 1.09 3.77 -11.29 -0.04 1.04 16 10 C 0.10 4.23 8.19 83.17 0.68 4.91 16 11 N -0.64 -25.30 3.57 -858.87 -3.07 -28.37 16 12 C 0.54 21.30 6.77 87.66 0.59 21.89 16 13 O -0.60 -27.20 16.25 -3.03 -0.05 -27.25 16 14 C -0.11 -3.27 0.61 -51.43 -0.03 -3.30 16 15 C -0.10 -2.59 5.27 31.57 0.17 -2.43 16 16 C -0.11 -2.11 6.88 31.86 0.22 -1.89 16 17 C -0.12 -2.66 6.51 31.68 0.21 -2.45 16 18 C 0.08 2.46 3.85 31.65 0.12 2.59 16 19 H 0.07 2.34 6.74 -2.39 -0.02 2.32 16 20 O -0.38 -11.02 11.11 -148.98 -1.65 -12.67 16 21 C 0.05 1.21 7.75 72.89 0.56 1.78 16 22 C -0.14 -3.72 5.74 32.05 0.18 -3.53 16 23 C 0.12 4.74 7.23 83.09 0.60 5.35 16 24 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 25 H 0.04 1.99 8.11 -2.39 -0.02 1.97 16 26 H 0.08 3.30 8.10 -2.38 -0.02 3.28 16 27 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.09 2.02 7.71 -2.39 -0.02 2.01 16 29 H 0.06 1.64 7.94 -2.39 -0.02 1.62 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.09 1.81 8.09 -2.39 -0.02 1.79 16 34 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.11 2.55 7.62 -2.39 -0.02 2.53 16 37 H 0.07 2.21 6.61 -2.39 -0.02 2.20 16 38 H 0.06 2.52 6.82 -2.39 -0.02 2.51 16 39 H 0.08 3.13 8.10 -2.39 -0.02 3.11 16 Total: -1.00 -59.66 312.71 2.52 -57.14 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 1.03 Total: 17.99 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 3.95 Total: -0.30 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -2.79 Total: -76.74 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -1.70 Total: -39.92 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -59.66 2.52 -57.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600860564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.826 kcal (2) G-P(sol) polarization free energy of solvation -59.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds