Wall clock time and date at job start Mon Mar 30 2020 04:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.50706 * 109.46950 * 239.99896 * 2 1 3 5 5 H 1.07995 * 119.99841 * 275.00795 * 4 2 1 6 6 C 1.37873 * 119.99987 * 95.00133 * 4 2 1 7 7 N 1.31511 * 120.00159 * 184.91857 * 6 4 2 8 8 Si 1.86800 * 120.00006 * 4.91511 * 6 4 2 9 9 H 1.48503 * 109.47081 * 84.83158 * 8 6 4 10 10 H 1.48498 * 109.47494 * 204.83072 * 8 6 4 11 11 H 1.48500 * 109.47485 * 324.83609 * 8 6 4 12 12 N 1.46503 * 109.47257 * 120.00428 * 2 1 3 13 13 C 1.34775 * 119.99483 * 274.99533 * 12 2 1 14 14 O 1.21494 * 120.00233 * 359.97438 * 13 12 2 15 15 C 1.48251 * 120.00047 * 179.72404 * 13 12 2 16 16 N 1.31782 * 126.64313 * 179.71044 * 15 13 12 17 17 C 1.34112 * 105.61310 * 179.89747 * 16 15 13 18 18 C 1.50705 * 126.19204 * 180.13793 * 17 16 15 19 19 H 1.08996 * 115.54901 * 26.02539 * 18 17 16 20 20 C 1.52995 * 117.49715 * 171.69652 * 18 17 16 21 21 C 1.52994 * 60.00112 * 107.49073 * 20 18 17 22 22 H 1.09002 * 117.49699 * 252.51394 * 21 20 18 23 23 C 1.52993 * 117.50156 * 107.49209 * 21 20 18 24 24 N 1.30084 * 107.61317 * 0.37192 * 17 16 15 25 25 O 1.21305 * 110.38821 * 359.76823 * 24 17 16 26 26 H 1.09000 * 109.47170 * 175.04004 * 1 2 3 27 27 H 1.09005 * 109.46614 * 295.03581 * 1 2 3 28 28 H 1.08996 * 109.47448 * 55.03130 * 1 2 3 29 29 H 0.97002 * 120.00344 * 180.02562 * 7 6 4 30 30 H 0.96998 * 120.00491 * 95.00002 * 12 2 1 31 31 H 1.09006 * 117.49792 * 214.98088 * 20 18 17 32 32 H 1.08999 * 117.50345 * 359.97438 * 20 18 17 33 33 H 1.08997 * 109.47130 * 351.37312 * 23 21 20 34 34 H 1.08999 * 109.47588 * 111.37530 * 23 21 20 35 35 H 1.09005 * 109.47415 * 231.37744 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1353 -1.7855 -1.2291 6 6 2.3602 0.0120 -2.3581 7 7 2.7058 -0.6132 -3.4622 8 14 2.3135 1.8790 -2.3175 9 1 3.5991 2.3948 -1.7822 10 1 2.1058 2.3991 -3.6928 11 1 1.1987 2.3275 -1.4450 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8587 1.1606 2.4115 15 6 2.6355 -0.7186 3.5690 16 7 2.8152 -0.1914 4.7634 17 6 3.2615 -1.1923 5.5363 18 6 3.6140 -1.0983 6.9986 19 1 3.1044 -0.3119 7.5553 20 6 3.9186 -2.4031 7.7371 21 6 5.0519 -1.4315 7.4015 22 1 5.7429 -1.7188 6.6089 23 6 5.6648 -0.6354 8.5553 24 7 3.3399 -2.2578 4.7943 25 8 2.9857 -2.0104 3.6608 26 1 -0.3633 -1.0238 -0.0889 27 1 -0.3633 0.4349 0.9312 28 1 -0.3634 0.5890 -0.8421 29 1 2.9368 -0.1049 -4.2555 30 1 2.2491 -1.6318 1.1526 31 1 3.6097 -2.4750 8.7800 32 1 3.8637 -3.3296 7.1656 33 1 5.0708 -0.7861 9.4566 34 1 6.6849 -0.9771 8.7310 35 1 5.6755 0.4243 8.3002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601189342.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:39 Heat of formation + Delta-G solvation = 54.492411 kcal Electronic energy + Delta-G solvation = -19382.393282 eV Core-core repulsion = 16191.823706 eV Total energy + Delta-G solvation = -3190.569576 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -45.65270 -39.29174 -38.46126 -35.74972 -35.02153 -32.81054 -32.23314 -30.02052 -28.93508 -25.56568 -25.29314 -24.91256 -22.59013 -21.29938 -20.71456 -19.86112 -18.66106 -18.19008 -17.17770 -16.34190 -15.88049 -15.64073 -14.76663 -14.56812 -14.33355 -13.61490 -13.50035 -13.10607 -12.80840 -12.63627 -12.55988 -12.30599 -12.10879 -11.77983 -11.68630 -11.26846 -11.21489 -10.94811 -10.80882 -10.72881 -10.54076 -10.06586 -9.87093 -9.79305 -9.35637 -8.83206 -8.46244 -6.33508 -4.39336 0.66418 1.86490 2.43090 3.06460 3.18893 3.23246 3.28902 3.34391 3.44057 3.72089 4.13724 4.23510 4.43740 4.46534 4.74375 4.92480 5.01333 5.13460 5.33235 5.38951 5.41827 5.53225 5.68228 5.72860 5.81767 5.91658 6.17630 6.35240 6.50707 6.71157 6.93935 7.14826 7.28963 7.74813 8.03864 8.30440 8.40324 8.68027 9.25957 10.77544 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.037489 B = 0.003891 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.702164 B = 7194.271521 C = 7265.743522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.230 3.770 3 H 0.056 0.944 4 C -0.535 4.535 5 H 0.083 0.917 6 C 0.084 3.916 7 N -0.882 5.882 8 Si 0.872 3.128 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.258 1.258 12 N -0.673 5.673 13 C 0.597 3.403 14 O -0.500 6.500 15 C 0.159 3.841 16 N -0.427 5.427 17 C 0.196 3.804 18 C -0.076 4.076 19 H 0.137 0.863 20 C -0.154 4.154 21 C -0.130 4.130 22 H 0.108 0.892 23 C -0.123 4.123 24 N -0.374 5.374 25 O 0.097 5.903 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.058 0.942 29 H 0.270 0.730 30 H 0.403 0.597 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.425 -2.609 19.049 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.130 3.870 3 H 0.074 0.926 4 C -0.572 4.572 5 H 0.101 0.899 6 C -0.121 4.121 7 N -0.517 5.517 8 Si 0.698 3.302 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.183 1.183 12 N -0.323 5.323 13 C 0.374 3.626 14 O -0.373 6.373 15 C -0.065 4.065 16 N -0.163 5.163 17 C -0.076 4.076 18 C -0.095 4.095 19 H 0.155 0.845 20 C -0.191 4.191 21 C -0.150 4.150 22 H 0.126 0.874 23 C -0.180 4.180 24 N -0.080 5.080 25 O 0.034 5.966 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.238 0.762 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.517 -2.153 19.411 19.691 hybrid contribution 0.087 0.488 -0.353 0.608 sum 2.604 -1.665 19.058 19.307 Atomic orbital electron populations 1.22244 0.97709 1.01196 0.99749 1.19384 0.91500 0.94466 0.81697 0.92586 1.20952 1.45907 0.95859 0.94524 0.89854 1.24932 0.93326 0.98767 0.95102 1.69865 1.43747 1.36407 1.01717 0.86926 0.79983 0.85578 0.77721 1.19629 1.20937 1.18277 1.46820 1.62474 1.14527 1.08521 1.16416 0.80068 0.85892 0.80200 1.90852 1.50018 1.13819 1.82653 1.29133 0.98192 0.81916 0.97219 1.71903 1.15495 1.28914 0.99974 1.24878 0.99814 0.84312 0.98589 1.20200 1.01215 1.02579 0.85543 0.84513 1.23263 1.01329 0.93387 1.01160 1.22521 0.89943 1.01439 1.01087 0.87404 1.21401 1.00823 0.99864 0.95943 1.74572 1.18531 1.23702 0.91168 1.85459 1.58299 1.28390 1.24474 0.92905 0.94954 0.92264 0.91983 0.76184 0.87367 0.87732 0.92067 0.91580 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.47 37.16 0.35 -2.71 16 2 C 0.23 5.15 2.22 -69.08 -0.15 4.99 16 3 H 0.06 1.35 4.73 -51.93 -0.25 1.11 16 4 C -0.53 -13.60 9.05 -34.44 -0.31 -13.91 16 5 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 7 N -0.88 -24.98 13.96 55.43 0.77 -24.21 16 8 Si 0.87 20.50 26.99 -169.99 -4.59 15.91 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.26 -5.91 6.82 56.52 0.39 -5.53 16 12 N -0.67 -12.93 5.07 -55.75 -0.28 -13.21 16 13 C 0.60 11.56 7.81 -12.14 -0.09 11.47 16 14 O -0.50 -11.23 16.76 5.37 0.09 -11.14 16 15 C 0.16 2.75 8.24 -13.82 -0.11 2.64 16 16 N -0.43 -7.41 11.55 -10.18 -0.12 -7.53 16 17 C 0.20 2.90 7.72 -156.60 -1.21 1.69 16 18 C -0.08 -0.82 6.05 -91.77 -0.56 -1.38 16 19 H 0.14 1.32 8.14 -51.93 -0.42 0.90 16 20 C -0.15 -1.31 9.79 -26.74 -0.26 -1.58 16 21 C -0.13 -1.17 6.11 -90.63 -0.55 -1.73 16 22 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 23 C -0.12 -0.83 10.19 37.15 0.38 -0.45 16 24 N -0.37 -5.69 11.76 31.12 0.37 -5.33 16 25 O 0.10 1.51 11.15 16.76 0.19 1.70 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.40 6.78 8.42 -40.82 -0.34 6.44 16 31 H 0.11 0.68 8.05 -51.93 -0.42 0.26 16 32 H 0.10 0.99 7.91 -51.93 -0.41 0.58 16 33 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 310.74 15.07 4.68 4.68 Total: -1.00 -29.67 310.74 -5.87 -35.54 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -4.36 Total: 2.40 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -2.62 Total: 1.20 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.74 Total: -50.28 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.28 Total: -9.44 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.59 Total: 15.91 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.67 -5.87 -35.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601189342.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.031 kcal (2) G-P(sol) polarization free energy of solvation -29.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds