Wall clock time and date at job start Mon Mar 30 2020 04:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.50706 * 109.46950 * 239.99896 * 2 1 3 5 5 H 1.07995 * 119.99841 * 275.00795 * 4 2 1 6 6 C 1.37873 * 119.99987 * 95.00133 * 4 2 1 7 7 N 1.31511 * 120.00159 * 184.91857 * 6 4 2 8 8 Si 1.86800 * 120.00006 * 4.91511 * 6 4 2 9 9 H 1.48503 * 109.47081 * 84.83158 * 8 6 4 10 10 H 1.48498 * 109.47494 * 204.83072 * 8 6 4 11 11 H 1.48500 * 109.47485 * 324.83609 * 8 6 4 12 12 N 1.46503 * 109.47257 * 120.00428 * 2 1 3 13 13 C 1.34775 * 119.99483 * 274.99533 * 12 2 1 14 14 O 1.21494 * 120.00233 * 359.97438 * 13 12 2 15 15 C 1.48251 * 120.00047 * 179.72404 * 13 12 2 16 16 N 1.31782 * 126.64313 * 179.71044 * 15 13 12 17 17 C 1.34112 * 105.61310 * 179.89747 * 16 15 13 18 18 C 1.50705 * 126.19204 * 180.13793 * 17 16 15 19 19 H 1.08996 * 115.54901 * 26.02539 * 18 17 16 20 20 C 1.52995 * 117.49715 * 171.69652 * 18 17 16 21 21 C 1.52994 * 60.00112 * 107.49073 * 20 18 17 22 22 H 1.09002 * 117.49699 * 252.51394 * 21 20 18 23 23 C 1.52993 * 117.50156 * 107.49209 * 21 20 18 24 24 N 1.30084 * 107.61317 * 0.37192 * 17 16 15 25 25 O 1.21305 * 110.38821 * 359.76823 * 24 17 16 26 26 H 1.09000 * 109.47170 * 175.04004 * 1 2 3 27 27 H 1.09005 * 109.46614 * 295.03581 * 1 2 3 28 28 H 1.08996 * 109.47448 * 55.03130 * 1 2 3 29 29 H 0.97002 * 120.00344 * 180.02562 * 7 6 4 30 30 H 0.96998 * 120.00491 * 95.00002 * 12 2 1 31 31 H 1.09006 * 117.49792 * 214.98088 * 20 18 17 32 32 H 1.08999 * 117.50345 * 359.97438 * 20 18 17 33 33 H 1.08997 * 109.47130 * 351.37312 * 23 21 20 34 34 H 1.08999 * 109.47588 * 111.37530 * 23 21 20 35 35 H 1.09005 * 109.47415 * 231.37744 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1353 -1.7855 -1.2291 6 6 2.3602 0.0120 -2.3581 7 7 2.7058 -0.6132 -3.4622 8 14 2.3135 1.8790 -2.3175 9 1 3.5991 2.3948 -1.7822 10 1 2.1058 2.3991 -3.6928 11 1 1.1987 2.3275 -1.4450 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8587 1.1606 2.4115 15 6 2.6355 -0.7186 3.5690 16 7 2.8152 -0.1914 4.7634 17 6 3.2615 -1.1923 5.5363 18 6 3.6140 -1.0983 6.9986 19 1 3.1044 -0.3119 7.5553 20 6 3.9186 -2.4031 7.7371 21 6 5.0519 -1.4315 7.4015 22 1 5.7429 -1.7188 6.6089 23 6 5.6648 -0.6354 8.5553 24 7 3.3399 -2.2578 4.7943 25 8 2.9857 -2.0104 3.6608 26 1 -0.3633 -1.0238 -0.0889 27 1 -0.3633 0.4349 0.9312 28 1 -0.3634 0.5890 -0.8421 29 1 2.9368 -0.1049 -4.2555 30 1 2.2491 -1.6318 1.1526 31 1 3.6097 -2.4750 8.7800 32 1 3.8637 -3.3296 7.1656 33 1 5.0708 -0.7861 9.4566 34 1 6.6849 -0.9771 8.7310 35 1 5.6755 0.4243 8.3002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601189342.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:26 Heat of formation + Delta-G solvation = 33.344950 kcal Electronic energy + Delta-G solvation = -19383.310305 eV Core-core repulsion = 16191.823706 eV Total energy + Delta-G solvation = -3191.486599 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -46.91176 -40.92778 -39.26800 -37.20657 -36.54637 -34.58629 -33.71048 -31.69231 -29.59907 -27.36905 -26.72542 -26.04299 -23.88181 -22.45415 -21.82035 -21.35849 -20.06521 -19.45819 -18.80633 -17.93953 -17.36010 -16.79428 -16.42717 -16.08696 -15.37570 -15.16479 -14.55708 -14.38955 -14.26004 -14.01036 -13.80261 -13.42959 -13.27752 -13.05904 -12.90147 -12.81525 -12.54826 -12.45554 -12.43938 -11.91111 -11.87410 -11.60896 -11.27524 -11.25784 -10.85263 -10.74544 -10.15582 -8.38970 -6.47341 -0.70295 0.66195 0.98197 1.33610 1.38975 1.47368 1.69683 1.80286 2.28161 2.52496 2.65783 2.93272 3.09122 3.55968 3.66607 3.76132 3.95397 4.29031 4.35372 4.41374 4.55377 4.69302 4.69429 4.76663 4.87288 4.91963 5.00864 5.02719 5.13631 5.23729 5.35935 5.42764 5.49631 5.98764 6.40592 6.59896 6.76249 6.85716 7.21436 8.75375 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.037489 B = 0.003891 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.702164 B = 7194.271521 C = 7265.743522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.234 3.766 3 H 0.043 0.957 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.037 3.963 7 N -0.925 5.925 8 Si 0.922 3.078 9 H -0.273 1.273 10 H -0.278 1.278 11 H -0.248 1.248 12 N -0.668 5.668 13 C 0.607 3.393 14 O -0.531 6.531 15 C 0.155 3.845 16 N -0.443 5.443 17 C 0.201 3.799 18 C -0.100 4.100 19 H 0.150 0.850 20 C -0.136 4.136 21 C -0.124 4.124 22 H 0.094 0.906 23 C -0.120 4.120 24 N -0.378 5.378 25 O 0.100 5.900 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.272 0.728 30 H 0.415 0.585 31 H 0.138 0.862 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.409 -2.436 21.400 21.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.132 3.868 3 H 0.061 0.939 4 C -0.568 4.568 5 H 0.081 0.919 6 C -0.164 4.164 7 N -0.563 5.563 8 Si 0.746 3.254 9 H -0.199 1.199 10 H -0.203 1.203 11 H -0.171 1.171 12 N -0.319 5.319 13 C 0.386 3.614 14 O -0.407 6.407 15 C -0.068 4.068 16 N -0.180 5.180 17 C -0.071 4.071 18 C -0.120 4.120 19 H 0.168 0.832 20 C -0.174 4.174 21 C -0.144 4.144 22 H 0.112 0.888 23 C -0.177 4.177 24 N -0.083 5.083 25 O 0.039 5.961 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.252 0.748 31 H 0.156 0.844 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.501 -2.015 21.772 22.007 hybrid contribution 0.133 0.328 -0.972 1.035 sum 2.634 -1.688 20.799 21.033 Atomic orbital electron populations 1.22157 0.95903 1.02064 1.00296 1.19194 0.92782 0.93423 0.81432 0.93940 1.21117 1.44948 0.95104 0.95646 0.91945 1.25592 0.93428 1.02506 0.94910 1.69963 1.45859 1.37961 1.02527 0.86123 0.80068 0.81172 0.78043 1.19881 1.20339 1.17142 1.46466 1.62445 1.14998 1.07965 1.16319 0.79248 0.85374 0.80461 1.90832 1.51288 1.15156 1.83374 1.28450 0.99226 0.82574 0.96585 1.71915 1.15895 1.29967 1.00223 1.25561 0.98327 0.83259 0.99932 1.20535 1.03119 1.04821 0.83522 0.83223 1.23376 1.00043 0.91810 1.02151 1.22608 0.88943 1.01536 1.01333 0.88771 1.21424 1.01524 0.99221 0.95543 1.74570 1.18893 1.23850 0.91012 1.85463 1.58220 1.27522 1.24907 0.91815 0.93832 0.92388 0.91849 0.74816 0.84438 0.88712 0.90358 0.90599 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.72 9.47 71.98 0.68 -5.04 16 2 C 0.23 10.28 2.22 44.25 0.10 10.37 16 3 H 0.04 2.01 4.73 -2.39 -0.01 2.00 16 4 C -0.53 -27.03 9.05 25.60 0.23 -26.80 16 5 H 0.06 3.39 8.06 -2.91 -0.02 3.36 16 6 C 0.04 1.99 5.47 84.65 0.46 2.45 16 7 N -0.93 -53.14 13.96 21.45 0.30 -52.85 16 8 Si 0.92 42.02 26.99 68.60 1.85 43.87 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.25 -10.77 6.82 99.48 0.68 -10.10 16 12 N -0.67 -25.23 5.07 -448.60 -2.27 -27.50 16 13 C 0.61 23.13 7.81 86.91 0.68 23.81 16 14 O -0.53 -23.54 16.76 -3.70 -0.06 -23.60 16 15 C 0.16 5.25 8.24 87.49 0.72 5.97 16 16 N -0.44 -14.98 11.55 -303.10 -3.50 -18.48 16 17 C 0.20 5.69 7.72 138.55 1.07 6.76 16 18 C -0.10 -1.97 6.05 -11.54 -0.07 -2.04 16 19 H 0.15 2.53 8.14 -2.39 -0.02 2.51 16 20 C -0.14 -1.95 9.79 30.59 0.30 -1.66 16 21 C -0.12 -1.96 6.11 -10.80 -0.07 -2.03 16 22 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 23 C -0.12 -1.28 10.19 71.98 0.73 -0.55 16 24 N -0.38 -11.06 11.76 -58.99 -0.69 -11.76 16 25 O 0.10 3.06 11.15 70.05 0.78 3.84 16 26 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.41 13.75 8.42 -92.71 -0.78 12.97 16 31 H 0.14 1.18 8.05 -2.38 -0.02 1.16 16 32 H 0.09 1.58 7.91 -2.39 -0.02 1.56 16 33 H 0.08 0.58 7.90 -2.39 -0.02 0.57 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -62.95 310.74 1.56 -61.39 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.31 Total: 13.83 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 4.84 Total: 11.26 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -6.17 Total: -110.59 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.72 Total: -19.76 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.85 Total: 43.87 kcal Total: -62.95 1.56 -61.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601189342.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.738 kcal (2) G-P(sol) polarization free energy of solvation -62.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds