Wall clock time and date at job start Mon Mar 30 2020 04:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47160 * 2 1 4 4 C 1.50697 * 109.47403 * 239.99520 * 2 1 3 5 5 H 1.07999 * 120.00246 * 239.99845 * 4 2 1 6 6 C 1.37874 * 119.99927 * 60.00457 * 4 2 1 7 7 N 1.31516 * 119.99956 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99929 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46949 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47233 * 119.99769 * 8 6 4 11 11 H 1.48499 * 109.46521 * 239.99602 * 8 6 4 12 12 N 1.46504 * 109.47000 * 119.99636 * 2 1 3 13 13 C 1.34782 * 119.99531 * 275.00708 * 12 2 1 14 14 O 1.21489 * 120.00322 * 359.97438 * 13 12 2 15 15 C 1.48250 * 119.99600 * 180.02562 * 13 12 2 16 16 N 1.31780 * 126.64108 * 179.97438 * 15 13 12 17 17 C 1.34114 * 105.61554 * 180.02562 * 16 15 13 18 18 C 1.50698 * 126.19523 * 179.73380 * 17 16 15 19 19 H 1.09005 * 115.55196 * 334.41687 * 18 17 16 20 20 C 1.52995 * 117.49935 * 188.74830 * 18 17 16 21 21 C 1.53004 * 117.50101 * 120.08779 * 18 17 16 22 22 H 1.08999 * 117.49808 * 215.00737 * 21 18 17 23 23 C 1.52997 * 117.49335 * 0.02562 * 21 18 17 24 24 N 1.30090 * 107.61377 * 0.02562 * 17 16 15 25 25 O 1.21304 * 110.38692 * 359.97438 * 24 17 16 26 26 H 1.08996 * 109.47554 * 300.00188 * 1 2 3 27 27 H 1.09004 * 109.46956 * 60.00802 * 1 2 3 28 28 H 1.08997 * 109.47160 * 180.02562 * 1 2 3 29 29 H 0.96997 * 119.99989 * 180.02562 * 7 6 4 30 30 H 0.96992 * 120.00371 * 95.00093 * 12 2 1 31 31 H 1.08994 * 117.50065 * 0.02562 * 20 18 17 32 32 H 1.09005 * 117.49846 * 145.02133 * 20 18 17 33 33 H 1.08992 * 109.47467 * 60.00254 * 23 21 18 34 34 H 1.09002 * 109.46619 * 180.02562 * 23 21 18 35 35 H 1.09002 * 109.47402 * 299.99386 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6995 -0.2395 -2.4826 7 7 0.9430 0.8295 -2.6034 8 14 2.3216 -1.1206 -4.0078 9 1 3.1466 -2.2872 -3.6035 10 1 1.1664 -1.5870 -4.8159 11 1 3.1469 -0.1876 -4.8163 12 7 2.0183 -0.6906 1.1963 13 6 2.1469 -0.0181 2.3572 14 8 1.8583 1.1608 2.4116 15 6 2.6416 -0.7167 3.5676 16 7 2.8172 -0.1904 4.7629 17 6 3.2749 -1.1883 5.5331 18 6 3.6363 -1.0919 6.9929 19 1 3.9281 -0.1009 7.3406 20 6 4.3314 -2.2969 7.6297 21 6 2.8717 -1.9867 7.9706 22 1 2.6605 -1.5842 8.9613 23 6 1.7992 -2.9112 7.3911 24 7 3.3565 -2.2532 4.7903 25 8 2.9980 -2.0070 3.6579 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 0.7084 1.1607 -3.4844 30 1 2.2490 -1.6316 1.1528 31 1 4.5277 -3.1593 6.9927 32 1 5.0802 -2.0987 8.3966 33 1 2.2561 -3.5929 6.6738 34 1 1.3402 -3.4847 8.1964 35 1 1.0368 -2.3144 6.8904 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601189344.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:51 Heat of formation + Delta-G solvation = 56.382888 kcal Electronic energy + Delta-G solvation = -19543.583539 eV Core-core repulsion = 16353.095939 eV Total energy + Delta-G solvation = -3190.487599 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.60407 -39.15038 -38.49603 -35.64011 -34.91915 -32.80799 -32.04716 -29.20509 -28.91966 -25.44986 -25.27923 -24.98432 -22.57449 -21.35406 -20.69019 -19.63870 -18.32240 -18.19319 -17.05463 -16.05264 -15.71945 -15.57493 -14.80143 -14.58661 -14.37718 -13.55090 -13.43598 -13.04822 -12.59296 -12.52682 -12.35898 -12.01165 -11.89151 -11.76426 -11.21538 -11.17438 -11.08012 -10.91433 -10.72327 -10.46835 -10.42368 -10.33567 -9.82235 -9.77210 -9.18974 -8.69674 -8.25410 -6.22125 -4.32289 0.72404 1.92173 2.50754 3.14005 3.20329 3.28879 3.30816 3.32130 3.47590 3.79057 4.18514 4.30781 4.35560 4.58421 4.84065 4.99195 5.11034 5.13622 5.38015 5.45851 5.51863 5.57570 5.69947 5.76170 5.86278 6.01603 6.66938 6.76344 6.95973 7.09761 7.29292 7.55810 7.72554 7.99008 8.00508 8.32366 8.47915 8.75830 9.35109 10.84016 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.041279 B = 0.003840 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.145438 B = 7289.862737 C = 7548.570362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.263 3.737 3 H 0.057 0.943 4 C -0.538 4.538 5 H 0.066 0.934 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.905 3.095 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.678 5.678 13 C 0.597 3.403 14 O -0.495 6.495 15 C 0.160 3.840 16 N -0.428 5.428 17 C 0.200 3.800 18 C -0.077 4.077 19 H 0.137 0.863 20 C -0.155 4.155 21 C -0.129 4.129 22 H 0.118 0.882 23 C -0.130 4.130 24 N -0.375 5.375 25 O 0.093 5.907 26 H 0.018 0.982 27 H 0.096 0.904 28 H 0.031 0.969 29 H 0.266 0.734 30 H 0.399 0.601 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.642 -7.207 16.275 18.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.163 3.837 3 H 0.075 0.925 4 C -0.576 4.576 5 H 0.084 0.916 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.732 3.268 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.327 5.327 13 C 0.374 3.626 14 O -0.368 6.368 15 C -0.064 4.064 16 N -0.164 5.164 17 C -0.072 4.072 18 C -0.097 4.097 19 H 0.155 0.845 20 C -0.193 4.193 21 C -0.149 4.149 22 H 0.136 0.864 23 C -0.187 4.187 24 N -0.080 5.080 25 O 0.031 5.969 26 H 0.037 0.963 27 H 0.114 0.886 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.233 0.767 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.595 -6.633 16.693 18.319 hybrid contribution 0.396 -0.766 -0.993 1.315 sum 3.991 -7.399 15.700 17.809 Atomic orbital electron populations 1.22125 0.97669 0.99705 1.01421 1.19039 0.91551 0.94219 0.78880 0.92531 1.21196 1.32947 1.13579 0.89883 0.91571 1.24876 0.94643 0.94907 0.99127 1.69898 1.35548 1.22331 1.24091 0.86332 0.78644 0.79536 0.82265 1.19599 1.20786 1.20803 1.46597 1.62708 1.14214 1.09202 1.16304 0.80304 0.85859 0.80162 1.90865 1.49744 1.13745 1.82401 1.29212 0.98017 0.81877 0.97252 1.71906 1.15422 1.29029 1.00003 1.24779 0.99605 0.84407 0.98451 1.20220 1.07217 0.98521 0.83748 0.84533 1.23276 0.95355 0.98115 1.02554 1.22520 0.93549 1.00115 0.98675 0.86415 1.21439 0.97577 0.98679 1.00998 1.74565 1.18558 1.23765 0.91159 1.85451 1.58308 1.28546 1.24612 0.96319 0.88584 0.94958 0.92410 0.76713 0.87698 0.87457 0.91726 0.91528 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.26 37.16 0.34 -3.18 16 2 C 0.26 6.32 2.56 -69.08 -0.18 6.15 16 3 H 0.06 1.55 7.58 -51.93 -0.39 1.15 16 4 C -0.54 -13.52 8.73 -34.44 -0.30 -13.82 16 5 H 0.07 1.59 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -23.78 11.32 55.43 0.63 -23.15 16 8 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 9 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 12 N -0.68 -13.48 5.07 -55.75 -0.28 -13.76 16 13 C 0.60 11.98 7.81 -12.14 -0.09 11.89 16 14 O -0.49 -11.66 16.76 5.38 0.09 -11.57 16 15 C 0.16 2.82 8.24 -13.82 -0.11 2.70 16 16 N -0.43 -7.53 11.55 -10.17 -0.12 -7.65 16 17 C 0.20 2.96 6.86 -156.60 -1.07 1.88 16 18 C -0.08 -0.85 6.33 -91.77 -0.58 -1.43 16 19 H 0.14 1.32 8.14 -51.93 -0.42 0.90 16 20 C -0.16 -1.33 9.79 -26.70 -0.26 -1.59 16 21 C -0.13 -1.14 6.41 -90.58 -0.58 -1.72 16 22 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 23 C -0.13 -1.26 9.13 37.16 0.34 -0.92 16 24 N -0.37 -5.63 10.92 31.12 0.34 -5.29 16 25 O 0.09 1.46 11.15 16.74 0.19 1.65 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.10 2.45 6.07 -51.93 -0.32 2.14 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.40 6.83 8.36 -40.82 -0.34 6.48 16 31 H 0.10 1.00 7.82 -51.93 -0.41 0.60 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.70 7.22 -51.93 -0.37 0.32 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 308.13 15.07 4.64 4.64 Total: -1.00 -28.83 308.13 -6.46 -35.29 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -4.33 Total: 3.37 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.59 Total: 1.61 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.57 Total: -49.85 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.28 Total: -9.93 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.83 -6.46 -35.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601189344.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.670 kcal (2) G-P(sol) polarization free energy of solvation -28.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds