Wall clock time and date at job start Mon Mar 30 2020 04:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47160 * 2 1 4 4 C 1.50697 * 109.47403 * 239.99520 * 2 1 3 5 5 H 1.07999 * 120.00246 * 239.99845 * 4 2 1 6 6 C 1.37874 * 119.99927 * 60.00457 * 4 2 1 7 7 N 1.31516 * 119.99956 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99929 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46949 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47233 * 119.99769 * 8 6 4 11 11 H 1.48499 * 109.46521 * 239.99602 * 8 6 4 12 12 N 1.46504 * 109.47000 * 119.99636 * 2 1 3 13 13 C 1.34782 * 119.99531 * 275.00708 * 12 2 1 14 14 O 1.21489 * 120.00322 * 359.97438 * 13 12 2 15 15 C 1.48250 * 119.99600 * 180.02562 * 13 12 2 16 16 N 1.31780 * 126.64108 * 179.97438 * 15 13 12 17 17 C 1.34114 * 105.61554 * 180.02562 * 16 15 13 18 18 C 1.50698 * 126.19523 * 179.73380 * 17 16 15 19 19 H 1.09005 * 115.55196 * 334.41687 * 18 17 16 20 20 C 1.52995 * 117.49935 * 188.74830 * 18 17 16 21 21 C 1.53004 * 117.50101 * 120.08779 * 18 17 16 22 22 H 1.08999 * 117.49808 * 215.00737 * 21 18 17 23 23 C 1.52997 * 117.49335 * 0.02562 * 21 18 17 24 24 N 1.30090 * 107.61377 * 0.02562 * 17 16 15 25 25 O 1.21304 * 110.38692 * 359.97438 * 24 17 16 26 26 H 1.08996 * 109.47554 * 300.00188 * 1 2 3 27 27 H 1.09004 * 109.46956 * 60.00802 * 1 2 3 28 28 H 1.08997 * 109.47160 * 180.02562 * 1 2 3 29 29 H 0.96997 * 119.99989 * 180.02562 * 7 6 4 30 30 H 0.96992 * 120.00371 * 95.00093 * 12 2 1 31 31 H 1.08994 * 117.50065 * 0.02562 * 20 18 17 32 32 H 1.09005 * 117.49846 * 145.02133 * 20 18 17 33 33 H 1.08992 * 109.47467 * 60.00254 * 23 21 18 34 34 H 1.09002 * 109.46619 * 180.02562 * 23 21 18 35 35 H 1.09002 * 109.47402 * 299.99386 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6995 -0.2395 -2.4826 7 7 0.9430 0.8295 -2.6034 8 14 2.3216 -1.1206 -4.0078 9 1 3.1466 -2.2872 -3.6035 10 1 1.1664 -1.5870 -4.8159 11 1 3.1469 -0.1876 -4.8163 12 7 2.0183 -0.6906 1.1963 13 6 2.1469 -0.0181 2.3572 14 8 1.8583 1.1608 2.4116 15 6 2.6416 -0.7167 3.5676 16 7 2.8172 -0.1904 4.7629 17 6 3.2749 -1.1883 5.5331 18 6 3.6363 -1.0919 6.9929 19 1 3.9281 -0.1009 7.3406 20 6 4.3314 -2.2969 7.6297 21 6 2.8717 -1.9867 7.9706 22 1 2.6605 -1.5842 8.9613 23 6 1.7992 -2.9112 7.3911 24 7 3.3565 -2.2532 4.7903 25 8 2.9980 -2.0070 3.6579 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 0.7084 1.1607 -3.4844 30 1 2.2490 -1.6316 1.1528 31 1 4.5277 -3.1593 6.9927 32 1 5.0802 -2.0987 8.3966 33 1 2.2561 -3.5929 6.6738 34 1 1.3402 -3.4847 8.1964 35 1 1.0368 -2.3144 6.8904 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601189344.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:49 Heat of formation + Delta-G solvation = 36.343521 kcal Electronic energy + Delta-G solvation = -19544.452511 eV Core-core repulsion = 16353.095939 eV Total energy + Delta-G solvation = -3191.356571 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -46.87562 -40.86196 -39.32049 -37.15904 -36.49982 -34.58935 -33.47141 -31.02002 -29.70850 -27.37135 -26.65043 -26.21968 -23.89717 -22.60988 -21.89351 -21.15995 -19.71431 -19.47937 -18.46068 -17.63598 -17.35885 -16.72411 -16.44131 -16.09373 -15.63876 -15.15034 -14.50478 -14.36423 -14.14289 -13.81704 -13.44528 -13.34041 -13.06909 -13.03988 -12.92044 -12.77376 -12.51984 -12.41567 -12.28989 -12.12854 -11.82749 -11.57212 -11.22115 -11.12781 -10.75304 -10.63457 -10.06972 -8.18300 -6.35452 -0.67313 0.70811 1.01367 1.47826 1.50059 1.61154 1.74095 1.85731 2.42489 2.57213 2.71458 3.05536 3.13823 3.60001 3.60813 3.83416 3.96137 4.32061 4.39392 4.55979 4.70261 4.72467 4.73509 4.88766 4.90150 4.97284 5.02250 5.06133 5.23660 5.29432 5.44960 5.62708 5.79067 6.04154 6.43972 6.66615 6.80927 6.97705 7.36558 8.88344 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.041279 B = 0.003840 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.145438 B = 7289.862737 C = 7548.570362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.269 3.731 3 H 0.016 0.984 4 C -0.548 4.548 5 H 0.078 0.922 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.972 3.028 9 H -0.260 1.260 10 H -0.279 1.279 11 H -0.285 1.285 12 N -0.669 5.669 13 C 0.605 3.395 14 O -0.534 6.534 15 C 0.156 3.844 16 N -0.446 5.446 17 C 0.205 3.795 18 C -0.107 4.107 19 H 0.150 0.850 20 C -0.138 4.138 21 C -0.118 4.118 22 H 0.147 0.853 23 C -0.132 4.132 24 N -0.374 5.374 25 O 0.099 5.901 26 H 0.018 0.982 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.267 0.733 30 H 0.414 0.586 31 H 0.094 0.906 32 H 0.138 0.862 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.609 -8.991 17.733 20.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.167 3.833 3 H 0.034 0.966 4 C -0.587 4.587 5 H 0.096 0.904 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.797 3.203 9 H -0.184 1.184 10 H -0.205 1.205 11 H -0.211 1.211 12 N -0.319 5.319 13 C 0.384 3.616 14 O -0.410 6.410 15 C -0.068 4.068 16 N -0.183 5.183 17 C -0.066 4.066 18 C -0.126 4.126 19 H 0.167 0.833 20 C -0.175 4.175 21 C -0.138 4.138 22 H 0.164 0.836 23 C -0.189 4.189 24 N -0.079 5.079 25 O 0.038 5.962 26 H 0.037 0.963 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.251 0.749 31 H 0.112 0.888 32 H 0.156 0.844 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.576 -8.472 18.162 20.556 hybrid contribution 0.109 -0.233 -1.336 1.361 sum 4.685 -8.704 16.826 19.514 Atomic orbital electron populations 1.21962 0.97314 1.00208 1.00333 1.18694 0.91802 0.92531 0.80237 0.96569 1.21514 1.32981 1.13871 0.90288 0.90378 1.25726 0.94758 0.95516 1.02132 1.70032 1.36663 1.23733 1.24775 0.85288 0.78071 0.78525 0.78409 1.18391 1.20486 1.21071 1.46265 1.62511 1.14776 1.08321 1.16318 0.79341 0.85334 0.80600 1.90842 1.51318 1.15529 1.83307 1.28375 0.99291 0.82668 0.96439 1.71918 1.15776 1.30264 1.00293 1.25464 0.98090 0.83276 0.99816 1.20582 1.09920 1.00352 0.81793 0.83265 1.23384 0.95917 0.96045 1.02177 1.22699 0.93447 0.98725 0.98910 0.83557 1.21463 0.97478 0.98604 1.01396 1.74564 1.18710 1.23773 0.90881 1.85456 1.58179 1.27438 1.25115 0.96272 0.90758 0.93514 0.92369 0.74887 0.88792 0.84438 0.93134 0.89305 0.94309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.64 9.26 71.98 0.67 -5.98 16 2 C 0.27 13.17 2.56 44.24 0.11 13.28 16 3 H 0.02 0.93 7.58 -2.39 -0.02 0.92 16 4 C -0.55 -27.49 8.73 25.60 0.22 -27.27 16 5 H 0.08 3.65 7.74 -2.91 -0.02 3.62 16 6 C 0.02 0.99 5.30 84.65 0.45 1.44 16 7 N -0.91 -50.09 11.32 21.45 0.24 -49.84 16 8 Si 0.97 40.41 29.54 68.60 2.03 42.44 16 9 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 10 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 12 N -0.67 -26.76 5.07 -448.59 -2.27 -29.03 16 13 C 0.61 24.71 7.81 86.91 0.68 25.39 16 14 O -0.53 -26.01 16.76 -3.68 -0.06 -26.07 16 15 C 0.16 5.47 8.24 87.49 0.72 6.19 16 16 N -0.45 -15.55 11.55 -303.07 -3.50 -19.05 16 17 C 0.21 5.86 6.86 138.54 0.95 6.81 16 18 C -0.11 -2.10 6.33 -11.54 -0.07 -2.17 16 19 H 0.15 2.53 8.14 -2.38 -0.02 2.51 16 20 C -0.14 -1.93 9.79 30.62 0.30 -1.63 16 21 C -0.12 -1.74 6.41 -10.77 -0.07 -1.81 16 22 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 23 C -0.13 -2.32 9.13 71.98 0.66 -1.66 16 24 N -0.37 -10.84 10.92 -58.96 -0.64 -11.49 16 25 O 0.10 3.05 11.15 69.95 0.78 3.83 16 26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 30 H 0.41 13.93 8.36 -92.71 -0.78 13.15 16 31 H 0.09 1.56 7.82 -2.39 -0.02 1.54 16 32 H 0.14 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.05 1.02 7.22 -2.39 -0.02 1.00 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -62.66 308.13 1.53 -61.12 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.35 Total: 15.49 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 4.62 Total: 12.60 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -6.18 Total: -109.41 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: 0.72 Total: -22.24 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -62.66 1.53 -61.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601189344.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.467 kcal (2) G-P(sol) polarization free energy of solvation -62.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds