Wall clock time and date at job start Mon Mar 30 2020 04:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 115.56178 * 2 1 4 4 C 1.52991 * 117.49791 * 145.69419 * 2 1 3 5 5 C 1.52995 * 60.00359 * 107.48990 * 4 2 1 6 6 H 1.09000 * 117.49876 * 252.49117 * 5 4 2 7 7 C 1.50702 * 117.50116 * 107.48725 * 5 4 2 8 8 N 1.30083 * 126.19466 * 351.36949 * 7 5 4 9 9 O 1.21301 * 110.39298 * 179.97438 * 8 7 5 10 10 C 1.34159 * 109.66113 * 0.02562 * 9 8 7 11 11 C 1.48256 * 126.63954 * 179.97438 * 10 9 8 12 12 O 1.21494 * 119.99891 * 180.02562 * 11 10 9 13 13 N 1.34777 * 119.99853 * 0.03030 * 11 10 9 14 14 C 1.46496 * 119.99613 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.46846 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.47339 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99786 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00098 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00197 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47511 * 89.99732 * 20 18 16 22 22 H 1.48500 * 109.47638 * 210.00102 * 20 18 16 23 23 H 1.48506 * 109.47173 * 330.00282 * 20 18 16 24 24 N 1.31783 * 106.72087 * 0.22848 * 10 9 8 25 25 H 1.09001 * 109.47263 * 205.68372 * 1 2 3 26 26 H 1.08998 * 109.47305 * 325.68442 * 1 2 3 27 27 H 1.09001 * 109.47337 * 85.68666 * 1 2 3 28 28 H 1.08999 * 117.50312 * 0.02562 * 4 2 1 29 29 H 1.09010 * 117.49890 * 214.97790 * 4 2 1 30 30 H 0.96996 * 119.99871 * 359.97438 * 13 11 10 31 31 H 1.09002 * 109.47226 * 299.99334 * 14 13 11 32 32 H 1.08999 * 109.47406 * 59.99933 * 14 13 11 33 33 H 1.08995 * 109.47938 * 299.99929 * 15 14 13 34 34 H 1.09004 * 109.47171 * 59.99908 * 15 14 13 35 35 H 0.97003 * 119.99593 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7649 5 6 2.2365 -1.1209 -0.7651 6 1 1.6115 -1.8586 -1.2684 7 6 3.5293 -0.7810 -1.4609 8 7 4.6117 -0.3335 -0.8949 9 8 5.4799 -0.1570 -1.7235 10 6 5.0174 -0.4861 -2.9391 11 6 5.7630 -0.4145 -4.2185 12 8 5.2227 -0.7441 -5.2556 13 7 7.0400 0.0162 -4.2311 14 6 7.7768 0.0864 -5.4954 15 6 9.1925 0.6037 -5.2325 16 6 9.9508 0.6754 -6.5329 17 1 9.4708 0.3817 -7.4548 18 6 11.2572 1.1158 -6.5458 19 7 11.8418 1.4730 -5.4232 20 14 12.1968 1.2053 -8.1577 21 1 12.0009 2.5433 -8.7714 22 1 13.6428 0.9856 -7.9008 23 1 11.6938 0.1581 -9.0828 24 7 3.7704 -0.8800 -2.7765 25 1 -0.3634 -0.9261 0.4454 26 1 -0.3634 0.8488 0.5793 27 1 -0.3634 0.0773 -1.0247 28 1 1.6112 -1.8588 1.2677 29 1 3.1716 -0.8752 1.2682 30 1 7.4712 0.2796 -3.4032 31 1 7.8296 -0.9071 -5.9408 32 1 7.2637 0.7638 -6.1779 33 1 9.1395 1.5972 -4.7873 34 1 9.7059 -0.0734 -4.5498 35 1 12.7609 1.7832 -5.4324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601203796.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:56 Heat of formation + Delta-G solvation = 48.872921 kcal Electronic energy + Delta-G solvation = -18766.570303 eV Core-core repulsion = 15575.757047 eV Total energy + Delta-G solvation = -3190.813256 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -45.82217 -39.52833 -38.55421 -35.86073 -35.07789 -33.12219 -32.49819 -29.90881 -29.02077 -26.05201 -25.23776 -24.21795 -22.52935 -21.31889 -21.10846 -20.26565 -18.55893 -18.36020 -16.83988 -16.56860 -15.98842 -15.56879 -15.18193 -14.71223 -14.54182 -13.83599 -13.66536 -13.32052 -13.18519 -12.95452 -12.41906 -12.36660 -12.20904 -11.84467 -11.41160 -11.32804 -11.12250 -10.94589 -10.73386 -10.62967 -10.48400 -10.43015 -9.91656 -9.71132 -9.36358 -8.86774 -8.47461 -6.15041 -4.18731 0.47480 1.70961 2.20327 2.87994 2.93495 3.26770 3.33436 3.33918 3.36991 3.55036 3.97032 4.34517 4.37310 4.38150 4.57594 4.85196 4.87520 5.22435 5.24604 5.30459 5.34783 5.41063 5.61200 5.62991 5.68106 5.84616 6.08500 6.15341 6.39782 6.58361 7.34601 7.50060 7.50905 7.81117 7.85564 8.03010 8.21099 8.86800 9.46745 10.96406 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.057827 B = 0.002908 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.084139 B = 9627.787841 C = 9929.422543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.130 4.130 3 H 0.108 0.892 4 C -0.153 4.153 5 C -0.077 4.077 6 H 0.138 0.862 7 C 0.198 3.802 8 N -0.371 5.371 9 O 0.098 5.902 10 C 0.154 3.846 11 C 0.605 3.395 12 O -0.490 6.490 13 N -0.693 5.693 14 C 0.120 3.880 15 C 0.011 3.989 16 C -0.524 4.524 17 H 0.061 0.939 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.898 3.102 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 N -0.422 5.422 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.408 0.592 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.846 -3.325 12.361 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 H 0.126 0.874 4 C -0.191 4.191 5 C -0.097 4.097 6 H 0.156 0.844 7 C -0.074 4.074 8 N -0.075 5.075 9 O 0.035 5.965 10 C -0.070 4.070 11 C 0.382 3.618 12 O -0.362 6.362 13 N -0.344 5.344 14 C -0.001 4.001 15 C -0.027 4.027 16 C -0.563 4.563 17 H 0.079 0.921 18 C -0.142 4.142 19 N -0.531 5.531 20 Si 0.726 3.274 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.197 1.197 24 N -0.158 5.158 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.243 0.757 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.369 -3.510 12.341 22.406 hybrid contribution 1.020 0.230 -0.512 1.164 sum -17.349 -3.280 11.828 21.253 Atomic orbital electron populations 1.21406 0.91628 1.02470 1.02562 1.22528 0.95927 0.94548 1.01923 0.87399 1.23275 1.03330 1.01184 0.91298 1.20226 0.91338 1.04302 0.93846 0.84413 1.24900 0.96216 0.99527 0.86741 1.74592 0.99381 1.18883 1.14659 1.85467 1.35621 1.61085 1.14345 1.28852 0.90814 0.97603 0.89707 1.16183 0.82262 0.80359 0.82965 1.90887 1.67897 1.48084 1.29361 1.46299 1.10739 1.63353 1.14043 1.22031 0.94250 1.01807 0.82043 1.19370 0.87818 0.97009 0.98455 1.20999 0.97272 1.44798 0.93213 0.92071 1.24992 0.97610 0.95003 0.96623 1.69952 1.13258 1.43854 1.26025 0.86493 0.78945 0.78572 0.83431 1.20523 1.21154 1.19686 1.71901 1.11507 1.17341 1.15025 0.92021 0.91538 0.91599 0.87281 0.87703 0.75714 0.91428 0.91441 0.95548 0.95535 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.19 37.16 0.38 -0.35 16 2 C -0.13 -1.04 6.11 -90.62 -0.55 -1.59 16 3 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 4 C -0.15 -1.18 9.79 -26.74 -0.26 -1.44 16 5 C -0.08 -0.76 6.05 -91.77 -0.56 -1.31 16 6 H 0.14 1.19 8.14 -51.93 -0.42 0.77 16 7 C 0.20 2.67 7.72 -156.60 -1.21 1.46 16 8 N -0.37 -5.13 11.76 31.12 0.37 -4.76 16 9 O 0.10 1.37 11.15 16.76 0.19 1.56 16 10 C 0.15 2.35 8.24 -13.82 -0.11 2.24 16 11 C 0.60 10.13 7.84 -12.14 -0.10 10.03 16 12 O -0.49 -9.76 17.10 5.37 0.09 -9.67 16 13 N -0.69 -11.19 5.55 -61.12 -0.34 -11.53 16 14 C 0.12 2.31 5.61 -4.05 -0.02 2.28 16 15 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 16 C -0.52 -13.86 9.11 -34.44 -0.31 -14.17 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 20 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 N -0.42 -6.63 11.55 -10.18 -0.12 -6.74 16 25 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.11 0.61 8.05 -51.93 -0.42 0.19 16 29 H 0.10 0.90 7.91 -51.92 -0.41 0.49 16 30 H 0.41 5.69 8.30 -40.82 -0.34 5.35 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 315.81 15.07 4.76 4.76 Total: -1.00 -30.31 315.81 -6.83 -37.13 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -4.50 Total: -0.70 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -2.99 Total: -1.21 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.65 Total: -47.62 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.28 Total: -8.11 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.31 -6.83 -37.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601203796.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.006 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds