Wall clock time and date at job start Mon Mar 30 2020 04:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35992 * 116.99995 * 2 1 4 4 C 1.39237 * 120.39937 * 179.97438 * 3 2 1 5 5 C 1.38331 * 118.45349 * 180.02562 * 4 3 2 6 6 C 1.39018 * 119.15884 * 359.97438 * 5 4 3 7 7 N 1.39591 * 119.63655 * 180.02562 * 6 5 4 8 8 C 1.34774 * 119.99572 * 174.91226 * 7 6 5 9 9 O 1.21576 * 120.00402 * 5.09758 * 8 7 6 10 10 N 1.34778 * 119.99836 * 185.09053 * 8 7 6 11 11 C 1.46502 * 120.00197 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.46608 * 325.00068 * 11 10 8 13 13 C 1.52998 * 109.46948 * 85.00007 * 11 10 8 14 14 C 1.50703 * 109.46869 * 205.00166 * 11 10 8 15 15 H 1.07995 * 120.00461 * 359.97438 * 14 11 10 16 16 C 1.37879 * 119.99719 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99883 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 120.00232 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47201 * 89.99530 * 18 16 14 20 20 H 1.48494 * 109.47560 * 210.00036 * 18 16 14 21 21 H 1.48499 * 109.46820 * 329.99974 * 18 16 14 22 22 N 1.32295 * 120.72056 * 0.02802 * 6 5 4 23 23 C 1.31949 * 121.69581 * 359.97438 * 22 6 5 24 24 H 1.09001 * 109.47250 * 300.00133 * 1 2 3 25 25 H 1.09005 * 109.46792 * 60.00038 * 1 2 3 26 26 H 1.08997 * 109.47427 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.77548 * 0.04606 * 4 3 2 28 28 H 1.08000 * 120.42399 * 180.02562 * 5 4 3 29 29 H 0.96996 * 119.99971 * 354.91145 * 7 6 5 30 30 H 0.97004 * 120.00169 * 0.02562 * 10 8 7 31 31 H 1.09006 * 109.46485 * 180.02562 * 13 11 10 32 32 H 1.08997 * 109.47182 * 299.99624 * 13 11 10 33 33 H 1.09003 * 109.47093 * 60.00338 * 13 11 10 34 34 H 0.97001 * 119.99801 * 180.02562 * 17 16 14 35 35 H 1.07996 * 119.61679 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4363 1.2943 0.0005 5 6 4.0221 2.5474 0.0011 6 6 3.2092 3.6751 0.0005 7 7 3.7897 4.9446 0.0005 8 6 3.0127 6.0408 -0.1036 9 8 1.8020 5.9301 -0.1041 10 7 3.5779 7.2600 -0.2070 11 6 2.7333 8.4518 -0.3195 12 1 1.8409 8.2113 -0.8973 13 6 2.3248 8.9212 1.0782 14 6 3.5008 9.5476 -1.0132 15 1 4.5162 9.3739 -1.3374 16 6 2.9066 10.7721 -1.2340 17 7 1.6698 10.9834 -0.8397 18 14 3.8580 12.1307 -2.0932 19 1 3.6382 12.0384 -3.5589 20 1 3.3862 13.4510 -1.6041 21 1 5.3061 11.9827 -1.7996 22 7 1.8914 3.5583 0.0000 23 6 1.3000 2.3788 -0.0004 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 4.0430 0.4008 0.0002 28 1 5.0974 2.6485 0.0011 29 1 4.7523 5.0376 0.0754 30 1 4.5439 7.3485 -0.2069 31 1 1.6960 9.8077 0.9943 32 1 1.7697 8.1286 1.5799 33 1 3.2173 9.1616 1.6560 34 1 1.2516 11.8447 -0.9953 35 1 0.2215 2.3225 -0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614212175.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:04 Heat of formation + Delta-G solvation = -12.969672 kcal Electronic energy + Delta-G solvation = -19410.624326 eV Core-core repulsion = 16217.129375 eV Total energy + Delta-G solvation = -3193.494952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.78370 -39.34752 -37.87727 -34.98866 -34.00970 -32.43191 -32.25844 -29.66824 -28.32791 -27.38218 -25.22291 -23.92257 -22.81196 -21.22278 -19.77806 -18.32859 -18.19365 -17.67450 -16.51073 -15.93803 -15.81852 -15.10987 -14.83239 -14.59982 -14.18021 -13.87608 -13.50286 -13.42250 -13.08107 -12.73102 -12.35266 -12.02802 -11.84815 -11.59564 -11.05102 -10.97480 -10.73321 -10.29121 -10.20997 -10.05099 -9.71628 -9.68740 -9.01504 -8.76079 -8.52073 -7.96070 -7.59748 -6.10143 -4.19159 1.14037 1.39173 2.97374 3.18729 3.26068 3.32718 3.34683 3.70114 4.20988 4.32814 4.48747 4.65615 4.83489 4.90250 5.00072 5.02398 5.22109 5.27575 5.31482 5.51034 5.74292 5.85073 6.25905 6.78584 6.86212 7.02415 7.07425 7.19189 7.24680 7.53027 7.64124 7.80201 7.96974 8.18396 8.27003 8.77667 8.92975 9.35176 9.51143 10.95971 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.045042 B = 0.003620 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.495445 B = 7733.800222 C = 8031.164685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.317 6.317 3 C 0.026 3.974 4 C -0.077 4.077 5 C -0.180 4.180 6 C 0.359 3.641 7 N -0.676 5.676 8 C 0.682 3.318 9 O -0.539 6.539 10 N -0.722 5.722 11 C 0.282 3.718 12 H 0.049 0.951 13 C -0.148 4.148 14 C -0.533 4.533 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.903 3.097 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 N -0.436 5.436 23 C 0.059 3.941 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.142 0.858 28 H 0.141 0.859 29 H 0.408 0.592 30 H 0.384 0.616 31 H 0.090 0.910 32 H 0.015 0.985 33 H 0.025 0.975 34 H 0.264 0.736 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.872 -18.764 2.317 19.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.230 6.230 3 C -0.022 4.022 4 C -0.103 4.103 5 C -0.204 4.204 6 C 0.126 3.874 7 N -0.326 5.326 8 C 0.381 3.619 9 O -0.411 6.411 10 N -0.375 5.375 11 C 0.180 3.820 12 H 0.067 0.933 13 C -0.207 4.207 14 C -0.572 4.572 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.730 3.270 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 N -0.151 5.151 23 C -0.101 4.101 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.117 0.883 27 H 0.160 0.840 28 H 0.159 0.841 29 H 0.244 0.756 30 H 0.216 0.784 31 H 0.108 0.892 32 H 0.034 0.966 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.138 -17.967 2.296 18.238 hybrid contribution 1.709 0.270 -0.400 1.776 sum 3.847 -17.697 1.896 18.209 Atomic orbital electron populations 1.23061 0.78406 1.03878 1.01660 1.86029 1.21273 1.26139 1.89555 1.19935 0.93176 0.85691 1.03383 1.20563 0.91541 0.97868 1.00373 1.21272 1.00692 0.90807 1.07612 1.18197 0.88899 0.84724 0.95584 1.42986 1.10281 1.03164 1.76139 1.16268 0.85865 0.80442 0.79334 1.90989 1.11283 1.84394 1.54411 1.45881 1.10071 1.05188 1.76383 1.18654 0.90529 0.79087 0.93751 0.93308 1.22101 0.99749 1.01423 0.97388 1.21215 1.00107 0.96987 1.38856 0.92092 1.24886 0.94998 0.98380 0.95478 1.69913 1.12256 1.24090 1.45775 0.86434 0.79898 0.80970 0.79684 1.20581 1.21084 1.19881 1.67657 1.09450 1.25516 1.12455 1.22873 1.00487 0.86251 1.00501 0.92524 0.92491 0.88279 0.84007 0.84114 0.75631 0.78409 0.89158 0.96560 0.95564 0.92574 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.82 101.05 0.99 1.18 16 2 O -0.32 -3.52 10.51 -19.71 -0.21 -3.73 16 3 C 0.03 0.33 6.71 -39.10 -0.26 0.07 16 4 C -0.08 -0.86 10.12 -39.18 -0.40 -1.26 16 5 C -0.18 -2.10 9.94 -39.26 -0.39 -2.49 16 6 C 0.36 5.75 7.42 -154.58 -1.15 4.60 16 7 N -0.68 -10.82 5.40 -15.78 -0.09 -10.91 16 8 C 0.68 14.52 8.49 -86.92 -0.74 13.78 16 9 O -0.54 -13.90 14.27 5.30 0.08 -13.83 16 10 N -0.72 -15.35 5.07 -59.81 -0.30 -15.66 16 11 C 0.28 7.31 2.56 -69.08 -0.18 7.13 16 12 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 13 C -0.15 -3.76 9.26 37.16 0.34 -3.42 16 14 C -0.53 -14.23 8.73 -34.44 -0.30 -14.53 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 17 N -0.88 -25.10 11.32 55.43 0.63 -24.48 16 18 Si 0.90 20.72 29.54 -169.99 -5.02 15.69 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 N -0.44 -8.05 7.88 -12.22 -0.10 -8.15 16 23 C 0.06 0.86 10.21 -17.39 -0.18 0.68 16 24 H 0.06 0.40 7.68 -51.93 -0.40 0.00 16 25 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 28 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 29 H 0.41 4.68 8.72 -40.82 -0.36 4.33 16 30 H 0.38 6.85 8.56 -40.82 -0.35 6.50 16 31 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 35 H 0.16 1.95 6.30 -52.49 -0.33 1.62 16 LS Contribution 303.04 15.07 4.57 4.57 Total: -1.00 -34.54 303.04 -6.99 -41.52 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -4.20 Total: 7.51 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -2.35 Total: 7.45 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.14 Total: -59.19 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.13 Total: -17.55 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.54 -6.99 -41.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614212175.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.553 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds