Wall clock time and date at job start Mon Mar 30 2020 04:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35992 * 116.99995 * 2 1 4 4 C 1.39237 * 120.39937 * 179.97438 * 3 2 1 5 5 C 1.38331 * 118.45349 * 180.02562 * 4 3 2 6 6 C 1.39018 * 119.15884 * 359.97438 * 5 4 3 7 7 N 1.39591 * 119.63655 * 180.02562 * 6 5 4 8 8 C 1.34774 * 119.99572 * 174.91226 * 7 6 5 9 9 O 1.21576 * 120.00402 * 5.09758 * 8 7 6 10 10 N 1.34778 * 119.99836 * 185.09053 * 8 7 6 11 11 C 1.46502 * 120.00197 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.46608 * 325.00068 * 11 10 8 13 13 C 1.52998 * 109.46948 * 85.00007 * 11 10 8 14 14 C 1.50703 * 109.46869 * 205.00166 * 11 10 8 15 15 H 1.07995 * 120.00461 * 359.97438 * 14 11 10 16 16 C 1.37879 * 119.99719 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99883 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 120.00232 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47201 * 89.99530 * 18 16 14 20 20 H 1.48494 * 109.47560 * 210.00036 * 18 16 14 21 21 H 1.48499 * 109.46820 * 329.99974 * 18 16 14 22 22 N 1.32295 * 120.72056 * 0.02802 * 6 5 4 23 23 C 1.31949 * 121.69581 * 359.97438 * 22 6 5 24 24 H 1.09001 * 109.47250 * 300.00133 * 1 2 3 25 25 H 1.09005 * 109.46792 * 60.00038 * 1 2 3 26 26 H 1.08997 * 109.47427 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.77548 * 0.04606 * 4 3 2 28 28 H 1.08000 * 120.42399 * 180.02562 * 5 4 3 29 29 H 0.96996 * 119.99971 * 354.91145 * 7 6 5 30 30 H 0.97004 * 120.00169 * 0.02562 * 10 8 7 31 31 H 1.09006 * 109.46485 * 180.02562 * 13 11 10 32 32 H 1.08997 * 109.47182 * 299.99624 * 13 11 10 33 33 H 1.09003 * 109.47093 * 60.00338 * 13 11 10 34 34 H 0.97001 * 119.99801 * 180.02562 * 17 16 14 35 35 H 1.07996 * 119.61679 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4363 1.2943 0.0005 5 6 4.0221 2.5474 0.0011 6 6 3.2092 3.6751 0.0005 7 7 3.7897 4.9446 0.0005 8 6 3.0127 6.0408 -0.1036 9 8 1.8020 5.9301 -0.1041 10 7 3.5779 7.2600 -0.2070 11 6 2.7333 8.4518 -0.3195 12 1 1.8409 8.2113 -0.8973 13 6 2.3248 8.9212 1.0782 14 6 3.5008 9.5476 -1.0132 15 1 4.5162 9.3739 -1.3374 16 6 2.9066 10.7721 -1.2340 17 7 1.6698 10.9834 -0.8397 18 14 3.8580 12.1307 -2.0932 19 1 3.6382 12.0384 -3.5589 20 1 3.3862 13.4510 -1.6041 21 1 5.3061 11.9827 -1.7996 22 7 1.8914 3.5583 0.0000 23 6 1.3000 2.3788 -0.0004 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 4.0430 0.4008 0.0002 28 1 5.0974 2.6485 0.0011 29 1 4.7523 5.0376 0.0754 30 1 4.5439 7.3485 -0.2069 31 1 1.6960 9.8077 0.9943 32 1 1.7697 8.1286 1.5799 33 1 3.2173 9.1616 1.6560 34 1 1.2516 11.8447 -0.9953 35 1 0.2215 2.3225 -0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614212175.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:04 Heat of formation + Delta-G solvation = -38.638848 kcal Electronic energy + Delta-G solvation = -19411.737425 eV Core-core repulsion = 16217.129375 eV Total energy + Delta-G solvation = -3194.608051 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.91801 -40.72150 -38.99945 -36.79102 -35.53097 -34.25111 -33.39108 -31.20857 -29.75598 -28.22213 -27.32369 -25.10417 -23.93250 -22.85734 -21.51448 -19.91318 -19.18075 -18.87804 -17.98215 -17.33267 -16.96659 -16.79788 -16.32982 -15.88206 -15.39908 -15.16759 -14.89147 -14.66995 -14.34521 -14.28007 -13.72456 -13.68879 -12.96790 -12.90397 -12.75475 -12.71955 -12.52135 -12.24741 -12.10361 -11.36922 -11.29398 -11.09092 -10.64839 -10.59282 -10.03996 -9.75833 -8.77498 -8.16051 -6.33619 0.13095 0.37493 1.46044 1.47432 1.57633 1.67624 2.26070 2.33248 2.43322 2.94650 3.14346 3.26639 3.65366 3.75159 3.95614 4.18665 4.39834 4.40830 4.61551 4.71651 4.75440 4.81927 4.94091 4.96269 5.11233 5.25690 5.39809 5.60419 5.67433 5.72565 5.85753 6.10335 6.14769 6.28796 6.74532 6.98188 7.34442 7.43533 7.80429 8.90735 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.045042 B = 0.003620 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.495445 B = 7733.800222 C = 8031.164685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.320 6.320 3 C 0.038 3.962 4 C -0.075 4.075 5 C -0.151 4.151 6 C 0.320 3.680 7 N -0.658 5.658 8 C 0.682 3.318 9 O -0.592 6.592 10 N -0.716 5.716 11 C 0.290 3.710 12 H -0.005 1.005 13 C -0.133 4.133 14 C -0.546 4.546 15 H 0.076 0.924 16 C 0.013 3.987 17 N -0.919 5.919 18 Si 0.976 3.024 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.258 1.258 22 N -0.493 5.493 23 C 0.032 3.968 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.127 0.873 27 H 0.180 0.820 28 H 0.185 0.815 29 H 0.431 0.569 30 H 0.403 0.597 31 H 0.067 0.933 32 H 0.007 0.993 33 H 0.042 0.958 34 H 0.265 0.735 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.627 -20.375 2.106 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.233 6.233 3 C -0.010 4.010 4 C -0.102 4.102 5 C -0.174 4.174 6 C 0.088 3.912 7 N -0.310 5.310 8 C 0.381 3.619 9 O -0.468 6.468 10 N -0.370 5.370 11 C 0.186 3.814 12 H 0.013 0.987 13 C -0.192 4.192 14 C -0.584 4.584 15 H 0.094 0.906 16 C -0.187 4.187 17 N -0.557 5.557 18 Si 0.800 3.200 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.181 1.181 22 N -0.209 5.209 23 C -0.126 4.126 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.146 0.854 27 H 0.197 0.803 28 H 0.203 0.797 29 H 0.270 0.730 30 H 0.238 0.762 31 H 0.086 0.914 32 H 0.026 0.974 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.955 -19.656 2.095 20.379 hybrid contribution 0.780 0.561 -0.322 1.013 sum 5.735 -19.096 1.773 20.017 Atomic orbital electron populations 1.23344 0.76712 1.05844 1.01932 1.86038 1.23049 1.25153 1.89038 1.20089 0.94006 0.85505 1.01431 1.21067 0.91178 0.99006 0.98910 1.21646 1.02348 0.89183 1.04246 1.18583 0.89032 0.85382 0.98238 1.42528 1.10886 1.02021 1.75600 1.16407 0.85538 0.81287 0.78668 1.90953 1.13901 1.85368 1.56561 1.45448 1.10562 1.04340 1.76678 1.18215 0.89459 0.80667 0.93036 0.98692 1.21913 0.99800 1.00023 0.97463 1.21543 1.00738 0.97185 1.38911 0.90577 1.25839 0.95835 1.00995 0.96070 1.70072 1.14008 1.24727 1.46895 0.85290 0.79120 0.77444 0.78127 1.20458 1.20994 1.18146 1.67439 1.11546 1.27822 1.14065 1.22958 1.01094 0.86311 1.02246 0.92232 0.92344 0.85446 0.80265 0.79741 0.72977 0.76169 0.91448 0.97362 0.93912 0.92551 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.82 113.37 1.11 1.34 16 2 O -0.32 -6.41 10.51 -93.46 -0.98 -7.40 16 3 C 0.04 0.90 6.71 22.58 0.15 1.06 16 4 C -0.08 -1.42 10.12 22.53 0.23 -1.20 16 5 C -0.15 -3.03 9.94 22.48 0.22 -2.81 16 6 C 0.32 9.99 7.42 132.86 0.99 10.97 16 7 N -0.66 -20.58 5.40 -322.11 -1.74 -22.32 16 8 C 0.68 29.67 8.49 179.05 1.52 31.19 16 9 O -0.59 -32.16 14.27 -3.96 -0.06 -32.22 16 10 N -0.72 -30.69 5.07 -461.42 -2.34 -33.03 16 11 C 0.29 15.52 2.56 44.24 0.11 15.63 16 12 H 0.00 -0.31 7.58 -2.39 -0.02 -0.33 16 13 C -0.13 -6.98 9.26 71.98 0.67 -6.32 16 14 C -0.55 -29.16 8.73 25.60 0.22 -28.94 16 15 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 16 C 0.01 0.68 5.30 84.65 0.45 1.13 16 17 N -0.92 -53.54 11.32 21.45 0.24 -53.29 16 18 Si 0.98 42.16 29.54 68.60 2.03 44.18 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 22 N -0.49 -18.72 7.88 -192.57 -1.52 -20.23 16 23 C 0.03 0.95 10.21 84.75 0.87 1.82 16 24 H 0.06 0.80 7.68 -2.39 -0.02 0.78 16 25 H 0.06 0.80 7.67 -2.38 -0.02 0.78 16 26 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.18 2.07 8.06 -2.91 -0.02 2.04 16 28 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.43 8.93 8.72 -92.71 -0.81 8.12 16 30 H 0.40 13.94 8.56 -92.70 -0.79 13.15 16 31 H 0.07 3.85 6.07 -2.38 -0.01 3.83 16 32 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 35 H 0.16 4.25 6.30 -2.91 -0.02 4.23 16 Total: -1.00 -78.96 303.04 1.71 -77.26 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -0.47 Total: 23.18 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 6.54 Total: 23.88 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -5.36 Total: -128.87 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -1.04 Total: -39.62 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -78.96 1.71 -77.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614212175.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.616 kcal (2) G-P(sol) polarization free energy of solvation -78.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds