Wall clock time and date at job start Mon Mar 30 2020 05:47:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86804 * 119.99997 * 2 1
4 4 H 1.48493 * 109.47250 * 270.00412 * 3 2 1
5 5 H 1.48506 * 109.46877 * 30.00463 * 3 2 1
6 6 H 1.48492 * 109.46908 * 149.99975 * 3 2 1
7 7 C 1.37872 * 120.00302 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99656 * 0.02562 * 7 2 1
9 9 C 1.50690 * 120.00510 * 179.97438 * 7 2 1
10 10 C 1.53493 * 114.21144 * 179.97438 * 9 7 2
11 11 N 1.47060 * 87.98914 * 220.14914 * 10 9 7
12 12 C 1.34784 * 136.05955 * 207.08502 * 11 10 9
13 13 O 1.21283 * 119.99649 * 359.97438 * 12 11 10
14 14 C 1.50697 * 119.99774 * 179.72672 * 12 11 10
15 15 C 1.53003 * 109.46624 * 180.02562 * 14 12 11
16 16 C 1.53003 * 109.46813 * 179.97438 * 15 14 12
17 17 C 1.50698 * 109.47183 * 179.97438 * 16 15 14
18 18 O 1.20765 * 119.99925 * 0.02562 * 17 16 15
19 19 C 1.50705 * 120.00412 * 179.97438 * 17 16 15
20 20 C 1.52996 * 117.49959 * 223.62478 * 19 17 16
21 21 C 1.52995 * 117.50019 * 154.99951 * 19 17 16
22 22 C 1.47066 * 87.88562 * 27.34336 * 11 10 9
23 23 H 0.96999 * 120.00323 * 359.97438 * 1 2 3
24 24 H 1.09004 * 113.28171 * 313.07021 * 9 7 2
25 25 H 1.08999 * 113.46842 * 105.36838 * 10 9 7
26 26 H 1.09008 * 113.51989 * 334.94331 * 10 9 7
27 27 H 1.09001 * 109.46809 * 299.99238 * 14 12 11
28 28 H 1.08993 * 109.47525 * 59.99679 * 14 12 11
29 29 H 1.09001 * 109.46782 * 299.99104 * 15 14 12
30 30 H 1.08993 * 109.47555 * 59.99547 * 15 14 12
31 31 H 1.08998 * 109.47446 * 299.99771 * 16 15 14
32 32 H 1.09001 * 109.47095 * 59.99865 * 16 15 14
33 33 H 1.09003 * 115.54403 * 9.33447 * 19 17 16
34 34 H 1.09004 * 117.50167 * 359.97438 * 20 19 17
35 35 H 1.09004 * 117.49731 * 145.02025 * 20 19 17
36 36 H 1.09000 * 117.50011 * 214.98262 * 21 19 17
37 37 H 1.09010 * 117.50039 * 359.97438 * 21 19 17
38 38 H 1.08995 * 113.47095 * 87.43770 * 22 11 10
39 39 H 1.09002 * 113.46562 * 217.88366 * 22 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0465 -1.4000
5 1 1.4466 2.6527 0.7002
6 1 3.5466 1.4402 0.7000
7 6 2.0046 -1.1940 -0.0005
8 1 1.4645 -2.1293 -0.0014
9 6 3.5115 -1.1940 -0.0011
10 6 4.1409 -2.5940 -0.0010
11 7 5.1447 -2.0860 0.9461
12 6 6.4191 -2.3881 1.2644
13 8 6.9896 -3.2915 0.6904
14 6 7.1368 -1.5998 2.3295
15 6 8.5582 -2.1417 2.4942
16 6 9.2871 -1.3409 3.5751
17 6 10.6868 -1.8749 3.7378
18 8 11.0628 -2.8002 3.0589
19 6 11.6179 -1.2536 4.7469
20 6 13.0623 -0.9979 4.3119
21 6 12.7482 -2.1262 5.2964
22 6 4.1439 -1.1076 1.3977
23 1 -0.4850 0.8400 0.0004
24 1 3.9420 -0.5101 -0.7326
25 1 4.5602 -2.8814 -0.9652
26 1 3.4936 -3.3619 0.4227
27 1 7.1800 -0.5505 2.0377
28 1 6.6004 -1.6927 3.2738
29 1 8.5154 -3.1911 2.7857
30 1 9.0943 -2.0485 1.5498
31 1 9.3298 -0.2916 3.2833
32 1 8.7511 -1.4338 4.5197
33 1 11.1617 -0.5340 5.4268
34 1 13.3393 -1.2794 3.2959
35 1 13.5566 -0.1097 4.7054
36 1 13.0359 -1.9804 6.3376
37 1 12.8181 -3.1499 4.9283
38 1 3.4969 -1.4828 2.1905
39 1 4.5659 -0.1286 1.6252
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000617895475.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:47:59
Heat of formation + Delta-G solvation = -25.251964 kcal
Electronic energy + Delta-G solvation = -19154.152465 eV
Core-core repulsion = 16063.665257 eV
Total energy + Delta-G solvation = -3090.487208 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 265.146 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-40.20371 -39.60893 -37.43785 -36.46662 -34.24210 -32.67044 -30.23394 -28.77061
-25.83499 -25.10424 -24.36182 -22.85321 -21.58607 -20.05502 -19.54412 -18.28402
-17.22822 -16.98165 -16.45262 -16.07056 -15.48427 -15.18011 -15.03280 -14.41554
-14.37553 -13.80692 -13.23556 -13.09634 -12.86967 -12.44086 -12.14417 -12.03282
-11.94283 -11.81834 -11.55886 -11.44833 -11.05528 -10.91800 -10.87334 -10.79258
-10.70139 -10.12304 -9.88417 -9.77235 -9.36865 -9.11963 -8.68562 -8.04067
-6.23248 -4.26005 1.62909 3.07036 3.18515 3.26718 3.27891 3.36856
3.45308 3.67819 4.28166 4.35967 4.49524 4.64833 4.65911 4.88892
4.91645 5.00485 5.06941 5.18355 5.31550 5.35996 5.43964 5.52224
5.62071 5.65659 5.68318 5.74051 5.94617 6.07847 6.12625 6.23724
6.31885 6.33031 6.40970 6.55255 7.12436 7.32129 7.52578 8.30918
8.40705 8.64612 8.80626 9.37640 10.88780
Molecular weight = 265.15amu
Principal moments of inertia in cm(-1)
A = 0.035567 B = 0.003187 C = 0.003002
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 787.057698 B = 8783.575987 C = 9326.047343
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.076 3.924
3 Si 0.877 3.123
4 H -0.276 1.276
5 H -0.287 1.287
6 H -0.261 1.261
7 C -0.513 4.513
8 H 0.080 0.920
9 C -0.007 4.007
10 C 0.113 3.887
11 N -0.647 5.647
12 C 0.530 3.470
13 O -0.559 6.559
14 C -0.134 4.134
15 C -0.095 4.095
16 C -0.166 4.166
17 C 0.382 3.618
18 O -0.450 6.450
19 C -0.224 4.224
20 C -0.151 4.151
21 C -0.154 4.154
22 C 0.085 3.915
23 H 0.267 0.733
24 H 0.060 0.940
25 H 0.060 0.940
26 H 0.079 0.921
27 H 0.089 0.911
28 H 0.090 0.910
29 H 0.074 0.926
30 H 0.074 0.926
31 H 0.100 0.900
32 H 0.100 0.900
33 H 0.125 0.875
34 H 0.101 0.899
35 H 0.104 0.896
36 H 0.103 0.897
37 H 0.104 0.896
38 H 0.085 0.915
39 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.975 2.362 11.482 23.160
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.529 5.529
2 C -0.128 4.128
3 Si 0.704 3.296
4 H -0.202 1.202
5 H -0.212 1.212
6 H -0.185 1.185
7 C -0.551 4.551
8 H 0.098 0.902
9 C -0.026 4.026
10 C -0.009 4.009
11 N -0.381 5.381
12 C 0.320 3.680
13 O -0.439 6.439
14 C -0.174 4.174
15 C -0.133 4.133
16 C -0.203 4.203
17 C 0.257 3.743
18 O -0.323 6.323
19 C -0.243 4.243
20 C -0.188 4.188
21 C -0.191 4.191
22 C -0.038 4.038
23 H 0.077 0.923
24 H 0.078 0.922
25 H 0.079 0.921
26 H 0.097 0.903
27 H 0.108 0.892
28 H 0.108 0.892
29 H 0.093 0.907
30 H 0.093 0.907
31 H 0.118 0.882
32 H 0.118 0.882
33 H 0.143 0.857
34 H 0.119 0.881
35 H 0.122 0.878
36 H 0.121 0.879
37 H 0.122 0.878
38 H 0.103 0.897
39 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 20.517 1.456 10.872 23.265
hybrid contribution 0.146 1.164 0.269 1.204
sum 20.663 2.620 11.141 23.621
Atomic orbital electron populations
1.69893 1.06380 1.27332 1.49252 1.25021 0.94685 0.99203 0.93843
0.86872 0.80445 0.83500 0.78804 1.20165 1.21250 1.18523 1.20775
0.87489 0.94897 1.51906 0.90235 1.20791 0.96884 0.92874 0.92077
1.23090 0.86634 0.99335 0.91885 1.50012 1.10015 1.37537 1.40570
1.20143 0.80520 0.83782 0.83557 1.90666 1.66333 1.32381 1.54532
1.21580 0.96328 1.00717 0.98751 1.21142 0.93258 1.00021 0.98845
1.22089 0.94244 1.02105 1.01859 1.23815 0.89305 0.81343 0.79820
1.90422 1.77075 1.24476 1.40367 1.22916 0.91711 1.05878 1.03751
1.22940 0.94199 1.00697 1.00987 1.22959 0.99627 0.97056 0.99454
1.23964 0.87138 0.90649 1.02072 0.92349 0.92208 0.92106 0.90254
0.89215 0.89172 0.90690 0.90684 0.88179 0.88204 0.85683 0.88068
0.87782 0.87883 0.87807 0.89731 0.92332
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.49 13.96 55.43 0.77 -24.71 16
2 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16
3 Si 0.88 19.58 27.15 -169.99 -4.62 14.97 16
4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16
6 H -0.26 -5.36 5.72 56.52 0.32 -5.04 16
7 C -0.51 -13.17 9.38 -34.45 -0.32 -13.49 16
8 H 0.08 2.22 8.06 -52.48 -0.42 1.80 16
9 C -0.01 -0.14 2.97 -91.13 -0.27 -0.41 16
10 C 0.11 2.27 8.17 -8.52 -0.07 2.20 16
11 N -0.65 -12.45 3.69 -185.07 -0.68 -13.13 16
12 C 0.53 9.85 8.08 -10.98 -0.09 9.77 16
13 O -0.56 -12.33 16.76 5.56 0.09 -12.24 16
14 C -0.13 -1.78 5.53 -27.88 -0.15 -1.94 16
15 C -0.09 -1.22 3.79 -26.73 -0.10 -1.32 16
16 C -0.17 -1.46 5.64 -27.88 -0.16 -1.62 16
17 C 0.38 3.91 6.92 -29.03 -0.20 3.71 16
18 O -0.45 -6.39 16.06 5.99 0.10 -6.29 16
19 C -0.22 -1.65 6.13 -91.77 -0.56 -2.21 16
20 C -0.15 -1.04 10.14 -26.73 -0.27 -1.31 16
21 C -0.15 -1.09 10.05 -26.73 -0.27 -1.35 16
22 C 0.08 1.60 7.43 -8.37 -0.06 1.54 16
23 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16
24 H 0.06 1.30 7.03 -51.93 -0.37 0.94 16
25 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16
26 H 0.08 1.58 8.10 -51.92 -0.42 1.16 16
27 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16
28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16
29 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16
30 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16
31 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16
32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16
33 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16
34 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16
35 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16
36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16
37 H 0.10 0.87 7.89 -51.92 -0.41 0.46 16
38 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16
39 H 0.06 1.03 7.15 -51.93 -0.37 0.66 16
LS Contribution 331.26 15.07 4.99 4.99
Total: -1.00 -31.87 331.26 -8.23 -40.10
By element:
Atomic # 1 Polarization: 7.09 SS G_CDS: -6.27 Total: 0.83 kcal
Atomic # 6 Polarization: -1.89 SS G_CDS: -2.63 Total: -4.52 kcal
Atomic # 7 Polarization: -37.94 SS G_CDS: 0.09 Total: -37.84 kcal
Atomic # 8 Polarization: -18.71 SS G_CDS: 0.19 Total: -18.53 kcal
Atomic # 14 Polarization: 19.58 SS G_CDS: -4.62 Total: 14.97 kcal
Total LS contribution 4.99 Total: 4.99 kcal
Total: -31.87 -8.23 -40.10 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000617895475.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.849 kcal
(2) G-P(sol) polarization free energy of solvation -31.866 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.017 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.252 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds