Wall clock time and date at job start Mon Mar 30 2020 05:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99997 * 2 1 4 4 H 1.48493 * 109.47250 * 270.00412 * 3 2 1 5 5 H 1.48506 * 109.46877 * 30.00463 * 3 2 1 6 6 H 1.48492 * 109.46908 * 149.99975 * 3 2 1 7 7 C 1.37872 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99656 * 0.02562 * 7 2 1 9 9 C 1.50690 * 120.00510 * 179.97438 * 7 2 1 10 10 C 1.53493 * 114.21144 * 179.97438 * 9 7 2 11 11 N 1.47060 * 87.98914 * 220.14914 * 10 9 7 12 12 C 1.34784 * 136.05955 * 207.08502 * 11 10 9 13 13 O 1.21283 * 119.99649 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99774 * 179.72672 * 12 11 10 15 15 C 1.53003 * 109.46624 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.46813 * 179.97438 * 15 14 12 17 17 C 1.50698 * 109.47183 * 179.97438 * 16 15 14 18 18 O 1.20765 * 119.99925 * 0.02562 * 17 16 15 19 19 C 1.50705 * 120.00412 * 179.97438 * 17 16 15 20 20 C 1.52996 * 117.49959 * 223.62478 * 19 17 16 21 21 C 1.52995 * 117.50019 * 154.99951 * 19 17 16 22 22 C 1.47066 * 87.88562 * 27.34336 * 11 10 9 23 23 H 0.96999 * 120.00323 * 359.97438 * 1 2 3 24 24 H 1.09004 * 113.28171 * 313.07021 * 9 7 2 25 25 H 1.08999 * 113.46842 * 105.36838 * 10 9 7 26 26 H 1.09008 * 113.51989 * 334.94331 * 10 9 7 27 27 H 1.09001 * 109.46809 * 299.99238 * 14 12 11 28 28 H 1.08993 * 109.47525 * 59.99679 * 14 12 11 29 29 H 1.09001 * 109.46782 * 299.99104 * 15 14 12 30 30 H 1.08993 * 109.47555 * 59.99547 * 15 14 12 31 31 H 1.08998 * 109.47446 * 299.99771 * 16 15 14 32 32 H 1.09001 * 109.47095 * 59.99865 * 16 15 14 33 33 H 1.09003 * 115.54403 * 9.33447 * 19 17 16 34 34 H 1.09004 * 117.50167 * 359.97438 * 20 19 17 35 35 H 1.09004 * 117.49731 * 145.02025 * 20 19 17 36 36 H 1.09000 * 117.50011 * 214.98262 * 21 19 17 37 37 H 1.09010 * 117.50039 * 359.97438 * 21 19 17 38 38 H 1.08995 * 113.47095 * 87.43770 * 22 11 10 39 39 H 1.09002 * 113.46562 * 217.88366 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.1409 -2.5940 -0.0010 11 7 5.1447 -2.0860 0.9461 12 6 6.4191 -2.3881 1.2644 13 8 6.9896 -3.2915 0.6904 14 6 7.1368 -1.5998 2.3295 15 6 8.5582 -2.1417 2.4942 16 6 9.2871 -1.3409 3.5751 17 6 10.6868 -1.8749 3.7378 18 8 11.0628 -2.8002 3.0589 19 6 11.6179 -1.2536 4.7469 20 6 13.0623 -0.9979 4.3119 21 6 12.7482 -2.1262 5.2964 22 6 4.1439 -1.1076 1.3977 23 1 -0.4850 0.8400 0.0004 24 1 3.9420 -0.5101 -0.7326 25 1 4.5602 -2.8814 -0.9652 26 1 3.4936 -3.3619 0.4227 27 1 7.1800 -0.5505 2.0377 28 1 6.6004 -1.6927 3.2738 29 1 8.5154 -3.1911 2.7857 30 1 9.0943 -2.0485 1.5498 31 1 9.3298 -0.2916 3.2833 32 1 8.7511 -1.4338 4.5197 33 1 11.1617 -0.5340 5.4268 34 1 13.3393 -1.2794 3.2959 35 1 13.5566 -0.1097 4.7054 36 1 13.0359 -1.9804 6.3376 37 1 12.8181 -3.1499 4.9283 38 1 3.4969 -1.4828 2.1905 39 1 4.5659 -0.1286 1.6252 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617895475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:59 Heat of formation + Delta-G solvation = -25.251964 kcal Electronic energy + Delta-G solvation = -19154.152465 eV Core-core repulsion = 16063.665257 eV Total energy + Delta-G solvation = -3090.487208 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.20371 -39.60893 -37.43785 -36.46662 -34.24210 -32.67044 -30.23394 -28.77061 -25.83499 -25.10424 -24.36182 -22.85321 -21.58607 -20.05502 -19.54412 -18.28402 -17.22822 -16.98165 -16.45262 -16.07056 -15.48427 -15.18011 -15.03280 -14.41554 -14.37553 -13.80692 -13.23556 -13.09634 -12.86967 -12.44086 -12.14417 -12.03282 -11.94283 -11.81834 -11.55886 -11.44833 -11.05528 -10.91800 -10.87334 -10.79258 -10.70139 -10.12304 -9.88417 -9.77235 -9.36865 -9.11963 -8.68562 -8.04067 -6.23248 -4.26005 1.62909 3.07036 3.18515 3.26718 3.27891 3.36856 3.45308 3.67819 4.28166 4.35967 4.49524 4.64833 4.65911 4.88892 4.91645 5.00485 5.06941 5.18355 5.31550 5.35996 5.43964 5.52224 5.62071 5.65659 5.68318 5.74051 5.94617 6.07847 6.12625 6.23724 6.31885 6.33031 6.40970 6.55255 7.12436 7.32129 7.52578 8.30918 8.40705 8.64612 8.80626 9.37640 10.88780 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.035567 B = 0.003187 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.057698 B = 8783.575987 C = 9326.047343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.076 3.924 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.513 4.513 8 H 0.080 0.920 9 C -0.007 4.007 10 C 0.113 3.887 11 N -0.647 5.647 12 C 0.530 3.470 13 O -0.559 6.559 14 C -0.134 4.134 15 C -0.095 4.095 16 C -0.166 4.166 17 C 0.382 3.618 18 O -0.450 6.450 19 C -0.224 4.224 20 C -0.151 4.151 21 C -0.154 4.154 22 C 0.085 3.915 23 H 0.267 0.733 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.975 2.362 11.482 23.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.551 4.551 8 H 0.098 0.902 9 C -0.026 4.026 10 C -0.009 4.009 11 N -0.381 5.381 12 C 0.320 3.680 13 O -0.439 6.439 14 C -0.174 4.174 15 C -0.133 4.133 16 C -0.203 4.203 17 C 0.257 3.743 18 O -0.323 6.323 19 C -0.243 4.243 20 C -0.188 4.188 21 C -0.191 4.191 22 C -0.038 4.038 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.143 0.857 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.517 1.456 10.872 23.265 hybrid contribution 0.146 1.164 0.269 1.204 sum 20.663 2.620 11.141 23.621 Atomic orbital electron populations 1.69893 1.06380 1.27332 1.49252 1.25021 0.94685 0.99203 0.93843 0.86872 0.80445 0.83500 0.78804 1.20165 1.21250 1.18523 1.20775 0.87489 0.94897 1.51906 0.90235 1.20791 0.96884 0.92874 0.92077 1.23090 0.86634 0.99335 0.91885 1.50012 1.10015 1.37537 1.40570 1.20143 0.80520 0.83782 0.83557 1.90666 1.66333 1.32381 1.54532 1.21580 0.96328 1.00717 0.98751 1.21142 0.93258 1.00021 0.98845 1.22089 0.94244 1.02105 1.01859 1.23815 0.89305 0.81343 0.79820 1.90422 1.77075 1.24476 1.40367 1.22916 0.91711 1.05878 1.03751 1.22940 0.94199 1.00697 1.00987 1.22959 0.99627 0.97056 0.99454 1.23964 0.87138 0.90649 1.02072 0.92349 0.92208 0.92106 0.90254 0.89215 0.89172 0.90690 0.90684 0.88179 0.88204 0.85683 0.88068 0.87782 0.87883 0.87807 0.89731 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 13.96 55.43 0.77 -24.71 16 2 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 19.58 27.15 -169.99 -4.62 14.97 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.26 -5.36 5.72 56.52 0.32 -5.04 16 7 C -0.51 -13.17 9.38 -34.45 -0.32 -13.49 16 8 H 0.08 2.22 8.06 -52.48 -0.42 1.80 16 9 C -0.01 -0.14 2.97 -91.13 -0.27 -0.41 16 10 C 0.11 2.27 8.17 -8.52 -0.07 2.20 16 11 N -0.65 -12.45 3.69 -185.07 -0.68 -13.13 16 12 C 0.53 9.85 8.08 -10.98 -0.09 9.77 16 13 O -0.56 -12.33 16.76 5.56 0.09 -12.24 16 14 C -0.13 -1.78 5.53 -27.88 -0.15 -1.94 16 15 C -0.09 -1.22 3.79 -26.73 -0.10 -1.32 16 16 C -0.17 -1.46 5.64 -27.88 -0.16 -1.62 16 17 C 0.38 3.91 6.92 -29.03 -0.20 3.71 16 18 O -0.45 -6.39 16.06 5.99 0.10 -6.29 16 19 C -0.22 -1.65 6.13 -91.77 -0.56 -2.21 16 20 C -0.15 -1.04 10.14 -26.73 -0.27 -1.31 16 21 C -0.15 -1.09 10.05 -26.73 -0.27 -1.35 16 22 C 0.08 1.60 7.43 -8.37 -0.06 1.54 16 23 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.06 1.30 7.03 -51.93 -0.37 0.94 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.08 1.58 8.10 -51.92 -0.42 1.16 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 30 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.87 7.89 -51.92 -0.41 0.46 16 38 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 39 H 0.06 1.03 7.15 -51.93 -0.37 0.66 16 LS Contribution 331.26 15.07 4.99 4.99 Total: -1.00 -31.87 331.26 -8.23 -40.10 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.27 Total: 0.83 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.63 Total: -4.52 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.09 Total: -37.84 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.19 Total: -18.53 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.62 Total: 14.97 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.87 -8.23 -40.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617895475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.849 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds