Wall clock time and date at job start Mon Mar 30 2020 05:47:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86804 * 119.99997 * 2 1
4 4 H 1.48493 * 109.47250 * 270.00412 * 3 2 1
5 5 H 1.48506 * 109.46877 * 30.00463 * 3 2 1
6 6 H 1.48492 * 109.46908 * 149.99975 * 3 2 1
7 7 C 1.37872 * 120.00302 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99656 * 0.02562 * 7 2 1
9 9 C 1.50690 * 120.00510 * 179.97438 * 7 2 1
10 10 C 1.53493 * 114.21144 * 179.97438 * 9 7 2
11 11 N 1.47060 * 87.98914 * 220.14914 * 10 9 7
12 12 C 1.34784 * 136.05955 * 207.08502 * 11 10 9
13 13 O 1.21283 * 119.99649 * 359.97438 * 12 11 10
14 14 C 1.50697 * 119.99774 * 179.72672 * 12 11 10
15 15 C 1.53003 * 109.46624 * 180.02562 * 14 12 11
16 16 C 1.53003 * 109.46813 * 179.97438 * 15 14 12
17 17 C 1.50698 * 109.47183 * 179.97438 * 16 15 14
18 18 O 1.20765 * 119.99925 * 0.02562 * 17 16 15
19 19 C 1.50705 * 120.00412 * 179.97438 * 17 16 15
20 20 C 1.52996 * 117.49959 * 223.62478 * 19 17 16
21 21 C 1.52995 * 117.50019 * 154.99951 * 19 17 16
22 22 C 1.47066 * 87.88562 * 27.34336 * 11 10 9
23 23 H 0.96999 * 120.00323 * 359.97438 * 1 2 3
24 24 H 1.09004 * 113.28171 * 313.07021 * 9 7 2
25 25 H 1.08999 * 113.46842 * 105.36838 * 10 9 7
26 26 H 1.09008 * 113.51989 * 334.94331 * 10 9 7
27 27 H 1.09001 * 109.46809 * 299.99238 * 14 12 11
28 28 H 1.08993 * 109.47525 * 59.99679 * 14 12 11
29 29 H 1.09001 * 109.46782 * 299.99104 * 15 14 12
30 30 H 1.08993 * 109.47555 * 59.99547 * 15 14 12
31 31 H 1.08998 * 109.47446 * 299.99771 * 16 15 14
32 32 H 1.09001 * 109.47095 * 59.99865 * 16 15 14
33 33 H 1.09003 * 115.54403 * 9.33447 * 19 17 16
34 34 H 1.09004 * 117.50167 * 359.97438 * 20 19 17
35 35 H 1.09004 * 117.49731 * 145.02025 * 20 19 17
36 36 H 1.09000 * 117.50011 * 214.98262 * 21 19 17
37 37 H 1.09010 * 117.50039 * 359.97438 * 21 19 17
38 38 H 1.08995 * 113.47095 * 87.43770 * 22 11 10
39 39 H 1.09002 * 113.46562 * 217.88366 * 22 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0465 -1.4000
5 1 1.4466 2.6527 0.7002
6 1 3.5466 1.4402 0.7000
7 6 2.0046 -1.1940 -0.0005
8 1 1.4645 -2.1293 -0.0014
9 6 3.5115 -1.1940 -0.0011
10 6 4.1409 -2.5940 -0.0010
11 7 5.1447 -2.0860 0.9461
12 6 6.4191 -2.3881 1.2644
13 8 6.9896 -3.2915 0.6904
14 6 7.1368 -1.5998 2.3295
15 6 8.5582 -2.1417 2.4942
16 6 9.2871 -1.3409 3.5751
17 6 10.6868 -1.8749 3.7378
18 8 11.0628 -2.8002 3.0589
19 6 11.6179 -1.2536 4.7469
20 6 13.0623 -0.9979 4.3119
21 6 12.7482 -2.1262 5.2964
22 6 4.1439 -1.1076 1.3977
23 1 -0.4850 0.8400 0.0004
24 1 3.9420 -0.5101 -0.7326
25 1 4.5602 -2.8814 -0.9652
26 1 3.4936 -3.3619 0.4227
27 1 7.1800 -0.5505 2.0377
28 1 6.6004 -1.6927 3.2738
29 1 8.5154 -3.1911 2.7857
30 1 9.0943 -2.0485 1.5498
31 1 9.3298 -0.2916 3.2833
32 1 8.7511 -1.4338 4.5197
33 1 11.1617 -0.5340 5.4268
34 1 13.3393 -1.2794 3.2959
35 1 13.5566 -0.1097 4.7054
36 1 13.0359 -1.9804 6.3376
37 1 12.8181 -3.1499 4.9283
38 1 3.4969 -1.4828 2.1905
39 1 4.5659 -0.1286 1.6252
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000617895475.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:47:58
Heat of formation + Delta-G solvation = -45.170216 kcal
Electronic energy + Delta-G solvation = -19155.016186 eV
Core-core repulsion = 16063.665257 eV
Total energy + Delta-G solvation = -3091.350929 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 265.146 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.26756 -40.86899 -38.97852 -37.10264 -35.26956 -34.65063 -31.71530 -29.96638
-27.33761 -26.72490 -25.42484 -23.35809 -22.61622 -21.58664 -20.30474 -19.72947
-19.11521 -18.03069 -17.60930 -17.14514 -16.61977 -16.48307 -16.05031 -15.85088
-15.33763 -15.24295 -14.79349 -14.41097 -14.03485 -13.61774 -13.46997 -13.42214
-13.05038 -12.82995 -12.61177 -12.48207 -12.46544 -12.39247 -11.79327 -11.76927
-11.60242 -11.56176 -11.45261 -11.20746 -10.86000 -10.63595 -10.47917 -9.62396
-8.25329 -6.33883 0.89951 1.45186 1.47444 1.58199 1.63268 1.98274
2.41970 2.90546 2.94572 3.06337 3.52264 3.81987 3.95748 3.96856
4.03529 4.05660 4.10388 4.20313 4.30304 4.46919 4.56820 4.60781
4.62972 4.65062 4.70604 4.79917 4.82982 4.83460 4.95975 5.00303
5.09492 5.12592 5.17663 5.33533 5.38898 5.62145 6.30052 6.60086
6.72302 6.90374 7.15740 7.33930 8.90225
Molecular weight = 265.15amu
Principal moments of inertia in cm(-1)
A = 0.035567 B = 0.003187 C = 0.003002
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 787.057698 B = 8783.575987 C = 9326.047343
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.946 5.946
2 C 0.017 3.983
3 Si 0.944 3.056
4 H -0.278 1.278
5 H -0.288 1.288
6 H -0.222 1.222
7 C -0.515 4.515
8 H 0.037 0.963
9 C -0.014 4.014
10 C 0.108 3.892
11 N -0.647 5.647
12 C 0.522 3.478
13 O -0.603 6.603
14 C -0.122 4.122
15 C -0.091 4.091
16 C -0.158 4.158
17 C 0.377 3.623
18 O -0.505 6.505
19 C -0.223 4.223
20 C -0.150 4.150
21 C -0.159 4.159
22 C 0.100 3.900
23 H 0.268 0.732
24 H 0.066 0.934
25 H 0.058 0.942
26 H 0.074 0.926
27 H 0.119 0.881
28 H 0.120 0.880
29 H 0.045 0.955
30 H 0.045 0.955
31 H 0.131 0.869
32 H 0.132 0.868
33 H 0.160 0.840
34 H 0.081 0.919
35 H 0.130 0.870
36 H 0.128 0.872
37 H 0.080 0.920
38 H 0.087 0.913
39 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.992 5.352 13.859 26.540
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.585 5.585
2 C -0.181 4.181
3 Si 0.767 3.233
4 H -0.203 1.203
5 H -0.214 1.214
6 H -0.145 1.145
7 C -0.553 4.553
8 H 0.055 0.945
9 C -0.034 4.034
10 C -0.015 4.015
11 N -0.381 5.381
12 C 0.314 3.686
13 O -0.485 6.485
14 C -0.161 4.161
15 C -0.129 4.129
16 C -0.194 4.194
17 C 0.256 3.744
18 O -0.382 6.382
19 C -0.241 4.241
20 C -0.187 4.187
21 C -0.196 4.196
22 C -0.022 4.022
23 H 0.077 0.923
24 H 0.084 0.916
25 H 0.076 0.924
26 H 0.092 0.908
27 H 0.137 0.863
28 H 0.138 0.862
29 H 0.064 0.936
30 H 0.064 0.936
31 H 0.149 0.851
32 H 0.150 0.850
33 H 0.177 0.823
34 H 0.099 0.901
35 H 0.149 0.851
36 H 0.146 0.854
37 H 0.098 0.902
38 H 0.105 0.895
39 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges 22.554 4.446 13.275 26.546
hybrid contribution -0.517 0.080 -0.536 0.750
sum 22.037 4.527 12.739 25.853
Atomic orbital electron populations
1.70052 1.08564 1.28424 1.51411 1.25939 0.95385 1.03396 0.93404
0.85803 0.80516 0.77991 0.78995 1.20348 1.21382 1.14462 1.20921
0.89778 0.93371 1.51258 0.94477 1.20721 0.94197 0.93929 0.94522
1.22992 0.87271 0.98752 0.92459 1.50036 1.10276 1.37503 1.40268
1.21223 0.79902 0.83552 0.83910 1.90654 1.67057 1.34506 1.56286
1.21646 0.95578 1.01026 0.97867 1.21039 0.93533 0.99330 0.99025
1.22119 0.92918 1.02666 1.01725 1.24461 0.90407 0.80237 0.79256
1.90422 1.78153 1.26976 1.42636 1.23021 0.91381 1.06291 1.03427
1.23015 0.94054 1.01531 1.00109 1.23018 0.99845 0.95989 1.00764
1.23732 0.86667 0.91997 0.99775 0.92336 0.91563 0.92377 0.90773
0.86260 0.86170 0.93561 0.93571 0.85074 0.85011 0.82286 0.90052
0.85140 0.85411 0.90173 0.89477 0.89235
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -55.25 13.96 21.45 0.30 -54.95 16
2 C 0.02 0.90 5.47 84.65 0.46 1.37 16
3 Si 0.94 38.83 27.15 68.60 1.86 40.69 16
4 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16
5 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16
6 H -0.22 -7.67 5.72 99.48 0.57 -7.10 16
7 C -0.52 -26.76 9.38 25.60 0.24 -26.52 16
8 H 0.04 2.17 8.06 -2.91 -0.02 2.15 16
9 C -0.01 -0.59 2.97 -11.12 -0.03 -0.63 16
10 C 0.11 4.34 8.17 83.17 0.68 5.02 16
11 N -0.65 -23.50 3.69 -857.84 -3.16 -26.66 16
12 C 0.52 18.43 8.08 87.65 0.71 19.14 16
13 O -0.60 -26.65 16.76 -3.04 -0.05 -26.70 16
14 C -0.12 -2.77 5.53 29.85 0.17 -2.61 16
15 C -0.09 -2.18 3.79 30.60 0.12 -2.06 16
16 C -0.16 -2.18 5.64 29.85 0.17 -2.02 16
17 C 0.38 7.07 6.92 29.10 0.20 7.27 16
18 O -0.50 -14.65 16.06 -1.47 -0.02 -14.67 16
19 C -0.22 -2.61 6.13 -11.54 -0.07 -2.68 16
20 C -0.15 -1.73 10.14 30.59 0.31 -1.42 16
21 C -0.16 -1.96 10.05 30.59 0.31 -1.65 16
22 C 0.10 3.46 7.43 83.26 0.62 4.08 16
23 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16
24 H 0.07 2.71 7.03 -2.39 -0.02 2.70 16
25 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16
26 H 0.07 3.02 8.10 -2.38 -0.02 3.00 16
27 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16
28 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16
29 H 0.05 1.35 8.06 -2.39 -0.02 1.33 16
30 H 0.05 1.35 8.05 -2.39 -0.02 1.33 16
31 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16
32 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16
33 H 0.16 0.79 8.14 -2.39 -0.02 0.77 16
34 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16
35 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16
36 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16
37 H 0.08 1.37 7.89 -2.38 -0.02 1.35 16
38 H 0.09 3.00 8.10 -2.39 -0.02 2.98 16
39 H 0.09 2.59 7.15 -2.39 -0.02 2.57 16
Total: -1.00 -74.15 331.26 3.68 -70.47
By element:
Atomic # 1 Polarization: 13.64 SS G_CDS: 0.88 Total: 14.53 kcal
Atomic # 6 Polarization: -6.58 SS G_CDS: 3.87 Total: -2.71 kcal
Atomic # 7 Polarization: -78.75 SS G_CDS: -2.86 Total: -81.61 kcal
Atomic # 8 Polarization: -41.30 SS G_CDS: -0.07 Total: -41.37 kcal
Atomic # 14 Polarization: 38.83 SS G_CDS: 1.86 Total: 40.69 kcal
Total: -74.15 3.68 -70.47 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000617895475.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.302 kcal
(2) G-P(sol) polarization free energy of solvation -74.155 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.853 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.472 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.170 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds