Wall clock time and date at job start Mon Mar 30 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99997 * 2 1 4 4 H 1.48493 * 109.47250 * 270.00412 * 3 2 1 5 5 H 1.48506 * 109.46877 * 30.00463 * 3 2 1 6 6 H 1.48492 * 109.46908 * 149.99975 * 3 2 1 7 7 C 1.37872 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99656 * 0.02562 * 7 2 1 9 9 C 1.50690 * 120.00510 * 179.97438 * 7 2 1 10 10 C 1.53493 * 114.21144 * 179.97438 * 9 7 2 11 11 N 1.47060 * 87.98914 * 220.14914 * 10 9 7 12 12 C 1.34784 * 136.05955 * 207.08502 * 11 10 9 13 13 O 1.21283 * 119.99649 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99774 * 179.72672 * 12 11 10 15 15 C 1.53003 * 109.46624 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.46813 * 179.97438 * 15 14 12 17 17 C 1.50698 * 109.47183 * 179.97438 * 16 15 14 18 18 O 1.20765 * 119.99925 * 0.02562 * 17 16 15 19 19 C 1.50705 * 120.00412 * 179.97438 * 17 16 15 20 20 C 1.52996 * 117.49959 * 223.62478 * 19 17 16 21 21 C 1.52995 * 117.50019 * 154.99951 * 19 17 16 22 22 C 1.47066 * 87.88562 * 27.34336 * 11 10 9 23 23 H 0.96999 * 120.00323 * 359.97438 * 1 2 3 24 24 H 1.09004 * 113.28171 * 313.07021 * 9 7 2 25 25 H 1.08999 * 113.46842 * 105.36838 * 10 9 7 26 26 H 1.09008 * 113.51989 * 334.94331 * 10 9 7 27 27 H 1.09001 * 109.46809 * 299.99238 * 14 12 11 28 28 H 1.08993 * 109.47525 * 59.99679 * 14 12 11 29 29 H 1.09001 * 109.46782 * 299.99104 * 15 14 12 30 30 H 1.08993 * 109.47555 * 59.99547 * 15 14 12 31 31 H 1.08998 * 109.47446 * 299.99771 * 16 15 14 32 32 H 1.09001 * 109.47095 * 59.99865 * 16 15 14 33 33 H 1.09003 * 115.54403 * 9.33447 * 19 17 16 34 34 H 1.09004 * 117.50167 * 359.97438 * 20 19 17 35 35 H 1.09004 * 117.49731 * 145.02025 * 20 19 17 36 36 H 1.09000 * 117.50011 * 214.98262 * 21 19 17 37 37 H 1.09010 * 117.50039 * 359.97438 * 21 19 17 38 38 H 1.08995 * 113.47095 * 87.43770 * 22 11 10 39 39 H 1.09002 * 113.46562 * 217.88366 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.1409 -2.5940 -0.0010 11 7 5.1447 -2.0860 0.9461 12 6 6.4191 -2.3881 1.2644 13 8 6.9896 -3.2915 0.6904 14 6 7.1368 -1.5998 2.3295 15 6 8.5582 -2.1417 2.4942 16 6 9.2871 -1.3409 3.5751 17 6 10.6868 -1.8749 3.7378 18 8 11.0628 -2.8002 3.0589 19 6 11.6179 -1.2536 4.7469 20 6 13.0623 -0.9979 4.3119 21 6 12.7482 -2.1262 5.2964 22 6 4.1439 -1.1076 1.3977 23 1 -0.4850 0.8400 0.0004 24 1 3.9420 -0.5101 -0.7326 25 1 4.5602 -2.8814 -0.9652 26 1 3.4936 -3.3619 0.4227 27 1 7.1800 -0.5505 2.0377 28 1 6.6004 -1.6927 3.2738 29 1 8.5154 -3.1911 2.7857 30 1 9.0943 -2.0485 1.5498 31 1 9.3298 -0.2916 3.2833 32 1 8.7511 -1.4338 4.5197 33 1 11.1617 -0.5340 5.4268 34 1 13.3393 -1.2794 3.2959 35 1 13.5566 -0.1097 4.7054 36 1 13.0359 -1.9804 6.3376 37 1 12.8181 -3.1499 4.9283 38 1 3.4969 -1.4828 2.1905 39 1 4.5659 -0.1286 1.6252 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617895475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:58 Heat of formation + Delta-G solvation = -45.170216 kcal Electronic energy + Delta-G solvation = -19155.016186 eV Core-core repulsion = 16063.665257 eV Total energy + Delta-G solvation = -3091.350929 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.26756 -40.86899 -38.97852 -37.10264 -35.26956 -34.65063 -31.71530 -29.96638 -27.33761 -26.72490 -25.42484 -23.35809 -22.61622 -21.58664 -20.30474 -19.72947 -19.11521 -18.03069 -17.60930 -17.14514 -16.61977 -16.48307 -16.05031 -15.85088 -15.33763 -15.24295 -14.79349 -14.41097 -14.03485 -13.61774 -13.46997 -13.42214 -13.05038 -12.82995 -12.61177 -12.48207 -12.46544 -12.39247 -11.79327 -11.76927 -11.60242 -11.56176 -11.45261 -11.20746 -10.86000 -10.63595 -10.47917 -9.62396 -8.25329 -6.33883 0.89951 1.45186 1.47444 1.58199 1.63268 1.98274 2.41970 2.90546 2.94572 3.06337 3.52264 3.81987 3.95748 3.96856 4.03529 4.05660 4.10388 4.20313 4.30304 4.46919 4.56820 4.60781 4.62972 4.65062 4.70604 4.79917 4.82982 4.83460 4.95975 5.00303 5.09492 5.12592 5.17663 5.33533 5.38898 5.62145 6.30052 6.60086 6.72302 6.90374 7.15740 7.33930 8.90225 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.035567 B = 0.003187 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.057698 B = 8783.575987 C = 9326.047343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.017 3.983 3 Si 0.944 3.056 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.222 1.222 7 C -0.515 4.515 8 H 0.037 0.963 9 C -0.014 4.014 10 C 0.108 3.892 11 N -0.647 5.647 12 C 0.522 3.478 13 O -0.603 6.603 14 C -0.122 4.122 15 C -0.091 4.091 16 C -0.158 4.158 17 C 0.377 3.623 18 O -0.505 6.505 19 C -0.223 4.223 20 C -0.150 4.150 21 C -0.159 4.159 22 C 0.100 3.900 23 H 0.268 0.732 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.160 0.840 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.992 5.352 13.859 26.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.181 4.181 3 Si 0.767 3.233 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.145 1.145 7 C -0.553 4.553 8 H 0.055 0.945 9 C -0.034 4.034 10 C -0.015 4.015 11 N -0.381 5.381 12 C 0.314 3.686 13 O -0.485 6.485 14 C -0.161 4.161 15 C -0.129 4.129 16 C -0.194 4.194 17 C 0.256 3.744 18 O -0.382 6.382 19 C -0.241 4.241 20 C -0.187 4.187 21 C -0.196 4.196 22 C -0.022 4.022 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.177 0.823 34 H 0.099 0.901 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 22.554 4.446 13.275 26.546 hybrid contribution -0.517 0.080 -0.536 0.750 sum 22.037 4.527 12.739 25.853 Atomic orbital electron populations 1.70052 1.08564 1.28424 1.51411 1.25939 0.95385 1.03396 0.93404 0.85803 0.80516 0.77991 0.78995 1.20348 1.21382 1.14462 1.20921 0.89778 0.93371 1.51258 0.94477 1.20721 0.94197 0.93929 0.94522 1.22992 0.87271 0.98752 0.92459 1.50036 1.10276 1.37503 1.40268 1.21223 0.79902 0.83552 0.83910 1.90654 1.67057 1.34506 1.56286 1.21646 0.95578 1.01026 0.97867 1.21039 0.93533 0.99330 0.99025 1.22119 0.92918 1.02666 1.01725 1.24461 0.90407 0.80237 0.79256 1.90422 1.78153 1.26976 1.42636 1.23021 0.91381 1.06291 1.03427 1.23015 0.94054 1.01531 1.00109 1.23018 0.99845 0.95989 1.00764 1.23732 0.86667 0.91997 0.99775 0.92336 0.91563 0.92377 0.90773 0.86260 0.86170 0.93561 0.93571 0.85074 0.85011 0.82286 0.90052 0.85140 0.85411 0.90173 0.89477 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.25 13.96 21.45 0.30 -54.95 16 2 C 0.02 0.90 5.47 84.65 0.46 1.37 16 3 Si 0.94 38.83 27.15 68.60 1.86 40.69 16 4 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.22 -7.67 5.72 99.48 0.57 -7.10 16 7 C -0.52 -26.76 9.38 25.60 0.24 -26.52 16 8 H 0.04 2.17 8.06 -2.91 -0.02 2.15 16 9 C -0.01 -0.59 2.97 -11.12 -0.03 -0.63 16 10 C 0.11 4.34 8.17 83.17 0.68 5.02 16 11 N -0.65 -23.50 3.69 -857.84 -3.16 -26.66 16 12 C 0.52 18.43 8.08 87.65 0.71 19.14 16 13 O -0.60 -26.65 16.76 -3.04 -0.05 -26.70 16 14 C -0.12 -2.77 5.53 29.85 0.17 -2.61 16 15 C -0.09 -2.18 3.79 30.60 0.12 -2.06 16 16 C -0.16 -2.18 5.64 29.85 0.17 -2.02 16 17 C 0.38 7.07 6.92 29.10 0.20 7.27 16 18 O -0.50 -14.65 16.06 -1.47 -0.02 -14.67 16 19 C -0.22 -2.61 6.13 -11.54 -0.07 -2.68 16 20 C -0.15 -1.73 10.14 30.59 0.31 -1.42 16 21 C -0.16 -1.96 10.05 30.59 0.31 -1.65 16 22 C 0.10 3.46 7.43 83.26 0.62 4.08 16 23 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 24 H 0.07 2.71 7.03 -2.39 -0.02 2.70 16 25 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.07 3.02 8.10 -2.38 -0.02 3.00 16 27 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.05 1.35 8.06 -2.39 -0.02 1.33 16 30 H 0.05 1.35 8.05 -2.39 -0.02 1.33 16 31 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.16 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 1.37 7.89 -2.38 -0.02 1.35 16 38 H 0.09 3.00 8.10 -2.39 -0.02 2.98 16 39 H 0.09 2.59 7.15 -2.39 -0.02 2.57 16 Total: -1.00 -74.15 331.26 3.68 -70.47 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.88 Total: 14.53 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 3.87 Total: -2.71 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -2.86 Total: -81.61 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -0.07 Total: -41.37 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.86 Total: 40.69 kcal Total: -74.15 3.68 -70.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617895475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.302 kcal (2) G-P(sol) polarization free energy of solvation -74.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds