Wall clock time and date at job start Mon Mar 30 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 120.00028 * 2 1 4 4 H 1.48501 * 109.47359 * 240.00163 * 3 2 1 5 5 H 1.48508 * 109.47320 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47227 * 120.00102 * 3 2 1 7 7 C 1.37876 * 119.99658 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99690 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.53045 * 109.46082 * 180.02562 * 9 7 2 11 11 C 1.53188 * 109.31694 * 178.61493 * 10 9 7 12 12 N 1.46925 * 108.77246 * 54.63451 * 11 10 9 13 13 C 1.34777 * 120.62882 * 126.37227 * 12 11 10 14 14 O 1.21283 * 120.00034 * 185.18931 * 13 12 11 15 15 C 1.50697 * 120.00346 * 5.18326 * 13 12 11 16 16 C 1.53001 * 120.24855 * 268.50750 * 15 13 12 17 17 C 1.52997 * 60.65352 * 247.85700 * 16 15 13 18 18 H 1.09004 * 119.80608 * 112.30712 * 17 16 15 19 19 C 1.54474 * 118.06726 * 269.59027 * 17 16 15 20 20 O 1.44433 * 104.80187 * 86.82808 * 19 17 16 21 21 C 1.44420 * 105.27525 * 319.48702 * 20 19 17 22 22 C 1.46924 * 118.73956 * 306.64601 * 12 11 10 23 23 C 1.52762 * 109.01259 * 53.30929 * 22 12 11 24 24 H 0.96997 * 119.99621 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.45204 * 299.96365 * 9 7 2 26 26 H 1.09007 * 109.49360 * 58.66464 * 10 9 7 27 27 H 1.08995 * 109.49796 * 298.57038 * 10 9 7 28 28 H 1.09005 * 109.58890 * 294.85188 * 11 10 9 29 29 H 1.08997 * 109.59020 * 174.42581 * 11 10 9 30 30 H 1.08998 * 117.43429 * 355.53809 * 16 15 13 31 31 H 1.09007 * 117.43288 * 140.18377 * 16 15 13 32 32 H 1.09000 * 110.37813 * 327.99785 * 19 17 16 33 33 H 1.09002 * 110.37466 * 205.65381 * 19 17 16 34 34 H 1.09000 * 110.37228 * 159.34392 * 21 20 19 35 35 H 1.09002 * 110.37041 * 281.68230 * 21 20 19 36 36 H 1.09005 * 109.58683 * 173.14291 * 22 12 11 37 37 H 1.09002 * 109.58714 * 293.56637 * 22 12 11 38 38 H 1.08997 * 109.56831 * 185.55269 * 23 22 12 39 39 H 1.08997 * 109.35697 * 65.49552 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2458 -3.6622 -0.0005 11 6 1.4768 -4.9866 0.0344 12 7 0.5224 -5.0088 -1.0824 13 6 0.5121 -6.0347 -1.9565 14 8 -0.2147 -5.9974 -2.9268 15 6 1.4037 -7.2280 -1.7285 16 6 2.8069 -7.2692 -2.3369 17 6 1.7385 -8.2368 -2.8498 18 1 1.3535 -8.1308 -3.8641 19 6 1.6165 -9.6153 -2.1634 20 8 0.7285 -9.3938 -1.0461 21 6 1.1190 -8.1164 -0.4971 22 6 -0.4164 -3.8886 -1.2318 23 6 0.3701 -2.5791 -1.2494 24 1 -0.4849 0.8400 -0.0004 25 1 0.6253 -2.5570 0.8901 26 1 2.8883 -3.5913 0.8772 27 1 2.8556 -3.6193 -0.9029 28 1 0.9373 -5.0712 0.9778 29 1 2.1752 -5.8175 -0.0651 30 1 3.0950 -6.4464 -2.9911 31 1 3.6077 -7.6841 -1.7246 32 1 2.5918 -9.9519 -1.8119 33 1 1.1873 -10.3447 -2.8503 34 1 0.3077 -7.6942 0.0959 35 1 2.0181 -8.2231 0.1098 36 1 -0.9667 -3.9952 -2.1667 37 1 -1.1135 -3.8818 -0.3938 38 1 -0.3224 -1.7375 -1.2606 39 1 0.9976 -2.5465 -2.1400 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689149176.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:50 Heat of formation + Delta-G solvation = -51.604542 kcal Electronic energy + Delta-G solvation = -20863.729749 eV Core-core repulsion = 17772.099807 eV Total energy + Delta-G solvation = -3091.629942 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.93556 -38.91780 -36.79030 -34.74218 -33.55555 -31.13644 -30.45176 -28.85249 -26.34159 -25.57760 -23.82398 -22.60877 -21.79094 -21.15484 -19.53070 -18.30694 -17.03583 -16.52890 -16.03799 -15.68289 -15.40486 -14.68879 -14.59892 -14.52643 -13.89759 -13.23213 -13.20354 -12.92957 -12.78601 -12.68239 -12.29710 -11.96060 -11.76645 -11.41521 -11.18763 -10.94524 -10.80278 -10.70198 -10.47670 -10.34721 -10.11614 -9.84440 -9.60439 -9.46624 -9.16330 -8.95025 -8.39549 -8.04592 -6.04245 -4.11230 2.77585 3.14122 3.28351 3.33804 3.35787 3.41793 3.85192 4.24431 4.38191 4.39516 4.60195 4.82743 4.84707 5.13906 5.25473 5.34010 5.44062 5.47114 5.47976 5.57872 5.70030 5.74897 5.88999 5.94302 6.03061 6.22923 6.38549 6.42863 6.49989 6.58873 6.80757 6.92886 7.15883 7.30501 7.66481 7.85307 7.90464 8.03509 8.37147 8.50812 8.91861 9.54053 11.01220 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.041551 B = 0.004588 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.708726 B = 6101.812196 C = 6269.273770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.108 3.892 12 N -0.593 5.593 13 C 0.555 3.445 14 O -0.549 6.549 15 C -0.199 4.199 16 C -0.113 4.113 17 C -0.164 4.164 18 H 0.129 0.871 19 C 0.074 3.926 20 O -0.370 6.370 21 C 0.090 3.910 22 C 0.109 3.891 23 C -0.123 4.123 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.104 0.896 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.775 -15.248 -1.191 16.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.015 4.015 12 N -0.325 5.325 13 C 0.342 3.658 14 O -0.427 6.427 15 C -0.202 4.202 16 C -0.151 4.151 17 C -0.183 4.183 18 H 0.147 0.853 19 C -0.002 4.002 20 O -0.288 6.288 21 C 0.013 3.987 22 C -0.012 4.012 23 C -0.161 4.161 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.026 -15.222 -1.598 15.827 hybrid contribution 0.634 1.258 -0.069 1.411 sum 4.660 -13.964 -1.667 14.815 Atomic orbital electron populations 1.69834 1.05872 1.26644 1.50555 1.24963 0.94859 0.99077 0.95016 0.86673 0.79626 0.83210 0.78569 1.20346 1.21288 1.20306 1.21139 0.92836 0.90583 1.50744 0.92771 1.18633 0.92594 0.91641 0.94093 1.22007 0.98949 0.94192 1.00996 1.21869 0.91347 0.99664 0.88637 1.48153 1.35960 1.20569 1.27796 1.19013 0.82152 0.82247 0.82405 1.90658 1.42474 1.80255 1.29330 1.23227 1.00544 0.98797 0.97673 1.23185 0.90062 1.00623 1.01189 1.24321 1.03713 0.90928 0.99347 0.85303 1.22935 0.94349 0.94933 0.88010 1.89196 1.57105 1.36720 1.45803 1.22831 1.01157 0.82050 0.92653 1.21839 0.91523 0.86455 1.01430 1.21936 1.00102 0.94766 0.99310 0.92861 0.95446 0.92005 0.92894 0.91878 0.91100 0.87265 0.87717 0.91661 0.88330 0.88316 0.91012 0.90637 0.92156 0.87756 0.94403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.60 11.31 55.43 0.63 -23.98 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 20.77 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.53 8.56 -34.45 -0.29 -13.83 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 9 C 0.05 1.14 2.07 -91.73 -0.19 0.95 16 10 C -0.12 -2.32 5.30 -26.61 -0.14 -2.46 16 11 C 0.11 1.69 6.03 -3.71 -0.02 1.67 16 12 N -0.59 -10.65 2.98 -173.03 -0.52 -11.17 16 13 C 0.56 9.94 7.25 -10.99 -0.08 9.86 16 14 O -0.55 -11.75 16.32 5.55 0.09 -11.66 16 15 C -0.20 -2.69 1.24 -154.09 -0.19 -2.88 16 16 C -0.11 -1.22 9.76 -26.73 -0.26 -1.48 16 17 C -0.16 -1.91 6.95 -89.06 -0.62 -2.53 16 18 H 0.13 1.59 8.14 -51.93 -0.42 1.16 16 19 C 0.07 0.75 7.44 37.93 0.28 1.03 16 20 O -0.37 -4.82 11.65 -35.23 -0.41 -5.23 16 21 C 0.09 1.08 6.24 37.94 0.24 1.31 16 22 C 0.11 2.18 6.41 -3.93 -0.03 2.16 16 23 C -0.12 -2.82 5.14 -26.83 -0.14 -2.96 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.91 5.75 -51.93 -0.30 0.62 16 30 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.22 8.02 -51.93 -0.42 0.81 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.56 7.00 -51.93 -0.36 1.20 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.10 2.68 6.03 -51.93 -0.31 2.37 16 39 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 311.35 15.07 4.69 4.69 Total: -1.00 -30.33 311.35 -8.08 -38.41 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.01 Total: 0.79 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.54 Total: -7.60 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.11 Total: -35.14 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.32 Total: -16.89 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.33 -8.08 -38.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689149176.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.198 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds