Wall clock time and date at job start Mon Mar 30 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 120.00028 * 2 1 4 4 H 1.48501 * 109.47359 * 240.00163 * 3 2 1 5 5 H 1.48508 * 109.47320 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47227 * 120.00102 * 3 2 1 7 7 C 1.37876 * 119.99658 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99690 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.53045 * 109.46082 * 180.02562 * 9 7 2 11 11 C 1.53188 * 109.31694 * 178.61493 * 10 9 7 12 12 N 1.46925 * 108.77246 * 54.63451 * 11 10 9 13 13 C 1.34777 * 120.62882 * 126.37227 * 12 11 10 14 14 O 1.21283 * 120.00034 * 185.18931 * 13 12 11 15 15 C 1.50697 * 120.00346 * 5.18326 * 13 12 11 16 16 C 1.53001 * 120.24855 * 268.50750 * 15 13 12 17 17 C 1.52997 * 60.65352 * 247.85700 * 16 15 13 18 18 H 1.09004 * 119.80608 * 112.30712 * 17 16 15 19 19 C 1.54474 * 118.06726 * 269.59027 * 17 16 15 20 20 O 1.44433 * 104.80187 * 86.82808 * 19 17 16 21 21 C 1.44420 * 105.27525 * 319.48702 * 20 19 17 22 22 C 1.46924 * 118.73956 * 306.64601 * 12 11 10 23 23 C 1.52762 * 109.01259 * 53.30929 * 22 12 11 24 24 H 0.96997 * 119.99621 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.45204 * 299.96365 * 9 7 2 26 26 H 1.09007 * 109.49360 * 58.66464 * 10 9 7 27 27 H 1.08995 * 109.49796 * 298.57038 * 10 9 7 28 28 H 1.09005 * 109.58890 * 294.85188 * 11 10 9 29 29 H 1.08997 * 109.59020 * 174.42581 * 11 10 9 30 30 H 1.08998 * 117.43429 * 355.53809 * 16 15 13 31 31 H 1.09007 * 117.43288 * 140.18377 * 16 15 13 32 32 H 1.09000 * 110.37813 * 327.99785 * 19 17 16 33 33 H 1.09002 * 110.37466 * 205.65381 * 19 17 16 34 34 H 1.09000 * 110.37228 * 159.34392 * 21 20 19 35 35 H 1.09002 * 110.37041 * 281.68230 * 21 20 19 36 36 H 1.09005 * 109.58683 * 173.14291 * 22 12 11 37 37 H 1.09002 * 109.58714 * 293.56637 * 22 12 11 38 38 H 1.08997 * 109.56831 * 185.55269 * 23 22 12 39 39 H 1.08997 * 109.35697 * 65.49552 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2458 -3.6622 -0.0005 11 6 1.4768 -4.9866 0.0344 12 7 0.5224 -5.0088 -1.0824 13 6 0.5121 -6.0347 -1.9565 14 8 -0.2147 -5.9974 -2.9268 15 6 1.4037 -7.2280 -1.7285 16 6 2.8069 -7.2692 -2.3369 17 6 1.7385 -8.2368 -2.8498 18 1 1.3535 -8.1308 -3.8641 19 6 1.6165 -9.6153 -2.1634 20 8 0.7285 -9.3938 -1.0461 21 6 1.1190 -8.1164 -0.4971 22 6 -0.4164 -3.8886 -1.2318 23 6 0.3701 -2.5791 -1.2494 24 1 -0.4849 0.8400 -0.0004 25 1 0.6253 -2.5570 0.8901 26 1 2.8883 -3.5913 0.8772 27 1 2.8556 -3.6193 -0.9029 28 1 0.9373 -5.0712 0.9778 29 1 2.1752 -5.8175 -0.0651 30 1 3.0950 -6.4464 -2.9911 31 1 3.6077 -7.6841 -1.7246 32 1 2.5918 -9.9519 -1.8119 33 1 1.1873 -10.3447 -2.8503 34 1 0.3077 -7.6942 0.0959 35 1 2.0181 -8.2231 0.1098 36 1 -0.9667 -3.9952 -2.1667 37 1 -1.1135 -3.8818 -0.3938 38 1 -0.3224 -1.7375 -1.2606 39 1 0.9976 -2.5465 -2.1400 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689149176.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:49 Heat of formation + Delta-G solvation = -70.562945 kcal Electronic energy + Delta-G solvation = -20864.551847 eV Core-core repulsion = 17772.099807 eV Total energy + Delta-G solvation = -3092.452040 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.01166 -40.21847 -38.37226 -35.70580 -35.35804 -32.94633 -31.99755 -29.80975 -28.09820 -26.41214 -25.40972 -24.14434 -23.19111 -22.11924 -21.05242 -19.65310 -18.53041 -18.12626 -17.37916 -16.71679 -16.53311 -16.48302 -15.89633 -15.66061 -15.06667 -14.91251 -14.65896 -14.36451 -14.22001 -13.94021 -13.60653 -13.33639 -13.09370 -12.93921 -12.79123 -12.49336 -12.23030 -12.17467 -11.97241 -11.76101 -11.43870 -11.29555 -11.09161 -10.87454 -10.77533 -10.51349 -10.40634 -9.60905 -8.08103 -6.22105 1.42403 1.43343 1.45814 1.50572 1.92679 2.33454 2.43744 3.00594 3.18888 3.38132 3.45624 3.46353 3.95487 4.02666 4.09460 4.26630 4.33400 4.39119 4.44088 4.57725 4.61892 4.67325 4.69477 4.71363 4.79419 4.89554 4.90299 4.96849 5.10430 5.15254 5.24269 5.43468 5.50742 5.65334 5.70538 5.96863 6.09472 6.37254 6.46684 6.89588 7.09380 7.46412 8.95343 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.041551 B = 0.004588 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.708726 B = 6101.812196 C = 6269.273770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.533 4.533 8 H 0.055 0.945 9 C 0.045 3.955 10 C -0.115 4.115 11 C 0.113 3.887 12 N -0.596 5.596 13 C 0.549 3.451 14 O -0.595 6.595 15 C -0.222 4.222 16 C -0.089 4.089 17 C -0.164 4.164 18 H 0.113 0.887 19 C 0.076 3.924 20 O -0.394 6.394 21 C 0.094 3.906 22 C 0.119 3.881 23 C -0.110 4.110 24 H 0.260 0.740 25 H 0.004 0.996 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.144 0.856 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.169 -17.095 -0.317 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.571 4.571 8 H 0.073 0.927 9 C 0.026 3.974 10 C -0.153 4.153 11 C -0.009 4.009 12 N -0.326 5.326 13 C 0.339 3.661 14 O -0.476 6.476 15 C -0.225 4.225 16 C -0.126 4.126 17 C -0.183 4.183 18 H 0.131 0.869 19 C 0.000 4.000 20 O -0.313 6.313 21 C 0.017 3.983 22 C -0.004 4.004 23 C -0.149 4.149 24 H 0.069 0.931 25 H 0.022 0.978 26 H 0.096 0.904 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.129 0.871 30 H 0.118 0.882 31 H 0.162 0.838 32 H 0.116 0.884 33 H 0.126 0.874 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 6.449 -17.085 -0.707 18.275 hybrid contribution -0.145 1.847 -0.399 1.895 sum 6.304 -15.238 -1.106 16.527 Atomic orbital electron populations 1.69977 1.07135 1.27135 1.51410 1.25717 0.95613 1.02305 0.94929 0.85730 0.78437 0.79411 0.78773 1.20051 1.21328 1.19361 1.21566 0.93144 0.92070 1.50276 0.92694 1.18619 0.93164 0.92814 0.92805 1.21869 0.98104 0.93906 1.01451 1.21984 0.91382 0.99180 0.88307 1.48195 1.35882 1.19935 1.28614 1.19831 0.81985 0.83100 0.81223 1.90628 1.44506 1.81329 1.31181 1.23198 1.01809 0.97621 0.99883 1.23345 0.89442 0.99625 1.00204 1.24447 1.03818 0.91774 0.98270 0.86922 1.23142 0.95587 0.93896 0.87392 1.89176 1.58451 1.36967 1.46714 1.22919 1.02319 0.81182 0.91848 1.21493 0.91685 0.86221 1.00981 1.21685 0.99344 0.95310 0.98552 0.93102 0.97766 0.90440 0.93407 0.90590 0.87071 0.88197 0.83823 0.88413 0.87351 0.89420 0.87381 0.91870 0.91799 0.90947 0.96146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.06 11.31 21.45 0.24 -51.81 16 2 C 0.01 0.70 5.30 84.65 0.45 1.15 16 3 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.53 -28.21 8.56 25.60 0.22 -27.99 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 9 C 0.04 2.10 2.07 -11.51 -0.02 2.08 16 10 C -0.12 -4.16 5.30 30.67 0.16 -4.00 16 11 C 0.11 3.28 6.03 86.36 0.52 3.80 16 12 N -0.60 -21.04 2.98 -819.74 -2.44 -23.48 16 13 C 0.55 19.37 7.25 87.66 0.64 20.00 16 14 O -0.59 -26.06 16.32 -3.04 -0.05 -26.11 16 15 C -0.22 -5.43 1.24 -51.91 -0.06 -5.50 16 16 C -0.09 -1.58 9.76 30.59 0.30 -1.28 16 17 C -0.16 -3.41 6.95 -9.78 -0.07 -3.48 16 18 H 0.11 2.69 8.14 -2.38 -0.02 2.67 16 19 C 0.08 1.25 7.44 72.48 0.54 1.79 16 20 O -0.39 -9.10 11.65 -148.98 -1.74 -10.83 16 21 C 0.09 1.92 6.24 72.49 0.45 2.37 16 22 C 0.12 4.91 6.41 86.22 0.55 5.47 16 23 C -0.11 -5.26 5.14 30.53 0.16 -5.10 16 24 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 25 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 27 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.11 2.38 5.75 -2.39 -0.01 2.36 16 30 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.14 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.96 8.02 -2.39 -0.02 1.94 16 35 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 2.75 7.00 -2.38 -0.02 2.73 16 37 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.07 3.92 6.03 -2.39 -0.01 3.90 16 39 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -68.31 311.35 2.90 -65.41 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 1.03 Total: 12.68 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 3.83 Total: -10.69 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -2.20 Total: -75.30 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -1.79 Total: -36.94 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -68.31 2.90 -65.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689149176.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.152 kcal (2) G-P(sol) polarization free energy of solvation -68.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds