Wall clock time and date at job start Mon Mar 30 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00116 * 2 1 4 4 H 1.48503 * 109.47368 * 270.00253 * 3 2 1 5 5 H 1.48507 * 109.47069 * 30.00204 * 3 2 1 6 6 H 1.48504 * 109.47005 * 149.99975 * 3 2 1 7 7 C 1.37878 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99830 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00002 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.49600 * 59.93248 * 9 7 2 11 11 C 1.53048 * 109.52209 * 299.85549 * 9 7 2 12 12 C 1.53040 * 109.53692 * 178.66567 * 11 9 7 13 13 C 1.53201 * 109.31269 * 61.36397 * 12 11 9 14 14 N 1.46962 * 108.88838 * 305.44295 * 13 12 11 15 15 C 1.34772 * 120.65027 * 233.52948 * 14 13 12 16 16 O 1.21289 * 119.99207 * 174.86243 * 15 14 13 17 17 C 1.50690 * 120.00413 * 354.86480 * 15 14 13 18 18 C 1.53000 * 119.81073 * 67.33222 * 17 15 14 19 19 C 1.52998 * 60.65337 * 112.31541 * 18 17 15 20 20 H 1.09003 * 119.80613 * 247.69409 * 19 18 17 21 21 C 1.54479 * 118.07039 * 90.41256 * 19 18 17 22 22 O 1.44430 * 104.80178 * 321.12594 * 21 19 18 23 23 C 1.45921 * 105.86307 * 319.97468 * 22 21 19 24 24 C 1.46926 * 118.71214 * 53.35556 * 14 13 12 25 25 H 0.96997 * 120.00061 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.45524 * 298.68438 * 11 9 7 27 27 H 1.08992 * 109.46266 * 58.66048 * 11 9 7 28 28 H 1.08998 * 109.49647 * 181.31454 * 12 11 9 29 29 H 1.08996 * 109.49962 * 301.41699 * 12 11 9 30 30 H 1.09004 * 109.58355 * 65.15024 * 13 12 11 31 31 H 1.08997 * 109.58682 * 185.43375 * 13 12 11 32 32 H 1.09000 * 117.43319 * 219.99252 * 18 17 15 33 33 H 1.09000 * 117.43194 * 4.68806 * 18 17 15 34 34 H 1.08992 * 110.37177 * 79.95768 * 21 19 18 35 35 H 1.09003 * 110.37267 * 202.18773 * 21 19 18 36 36 H 1.09002 * 110.59518 * 280.94221 * 23 22 21 37 37 H 1.09007 * 110.84821 * 158.13412 * 23 22 21 38 38 H 1.09008 * 109.58296 * 186.78411 * 24 14 13 39 39 H 1.09001 * 109.58937 * 66.50108 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 0.0000 10 1 3.8749 -0.6799 0.8898 11 6 4.0234 -0.4752 -1.2503 12 6 5.5535 -0.4459 -1.2334 13 6 6.0880 -1.8815 -1.2482 14 7 5.4861 -2.6247 -0.1323 15 6 6.2615 -3.2784 0.7554 16 8 5.7594 -3.8095 1.7234 17 6 7.7520 -3.3493 0.5454 18 6 8.5961 -2.0775 0.6493 19 6 8.7598 -3.1743 1.7034 20 1 8.4428 -2.9909 2.7300 21 6 9.8160 -4.2731 1.4511 22 8 9.7300 -4.5497 0.0362 23 6 8.3078 -4.5243 -0.2894 24 6 4.0228 -2.6382 -0.0008 25 1 -0.4850 0.8400 -0.0004 26 1 3.6801 -1.0042 -2.1394 27 1 3.6411 0.5453 -1.2646 28 1 5.9168 0.0866 -2.1124 29 1 5.8977 0.0611 -0.3321 30 1 5.8210 -2.3611 -2.1899 31 1 7.1724 -1.8689 -1.1391 32 1 9.4031 -1.9500 -0.0722 33 1 8.0891 -1.1617 0.9532 34 1 10.8109 -3.9087 1.7067 35 1 9.5797 -5.1665 2.0292 36 1 7.8301 -5.4587 0.0055 37 1 8.1565 -4.3392 -1.3530 38 1 3.7444 -3.1249 0.9340 39 1 3.5855 -3.1802 -0.8393 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689149862.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:57 Heat of formation + Delta-G solvation = -42.592285 kcal Electronic energy + Delta-G solvation = -21014.147682 eV Core-core repulsion = 17922.908541 eV Total energy + Delta-G solvation = -3091.239141 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.98031 -39.05311 -36.98492 -34.61947 -33.44723 -31.79337 -30.65746 -29.09237 -26.09555 -25.59226 -25.05232 -22.32487 -21.72639 -20.99636 -19.65715 -18.45605 -17.31049 -16.73729 -16.13482 -15.91663 -15.49682 -15.06013 -14.73268 -14.39159 -13.79689 -13.65074 -13.35632 -13.07523 -12.92591 -12.73137 -12.54724 -12.30610 -12.09935 -11.67273 -11.46481 -11.19341 -10.84492 -10.60320 -10.43588 -10.31737 -10.19125 -9.88699 -9.82058 -9.58921 -9.33003 -9.04564 -8.60083 -8.15652 -6.13071 -4.13382 2.72914 3.05157 3.20735 3.31041 3.32892 3.35036 3.62438 4.30309 4.35111 4.40069 4.51471 4.71889 4.93350 5.12886 5.20668 5.20832 5.31333 5.36773 5.40845 5.42668 5.52982 5.55534 5.60084 5.83269 5.86595 5.94431 6.03061 6.14228 6.32680 6.38747 6.46869 6.63560 6.69013 6.80623 7.08692 7.41143 7.68263 7.76606 8.40513 8.45597 8.89972 9.48350 10.99948 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.037022 B = 0.005242 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.116096 B = 5340.403884 C = 5554.134466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.076 0.924 9 C 0.006 3.994 10 H 0.029 0.971 11 C -0.123 4.123 12 C -0.138 4.138 13 C 0.108 3.892 14 N -0.599 5.599 15 C 0.555 3.445 16 O -0.540 6.540 17 C -0.205 4.205 18 C -0.119 4.119 19 C -0.167 4.167 20 H 0.129 0.871 21 C 0.074 3.926 22 O -0.374 6.374 23 C 0.094 3.906 24 C 0.126 3.874 25 H 0.265 0.735 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.364 -4.121 -2.071 19.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.192 1.192 7 C -0.553 4.553 8 H 0.094 0.906 9 C -0.014 4.014 10 H 0.048 0.952 11 C -0.160 4.160 12 C -0.177 4.177 13 C -0.015 4.015 14 N -0.331 5.331 15 C 0.341 3.659 16 O -0.418 6.418 17 C -0.208 4.208 18 C -0.156 4.156 19 C -0.186 4.186 20 H 0.147 0.853 21 C -0.002 4.002 22 O -0.293 6.293 23 C 0.018 3.982 24 C 0.006 3.994 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 19.077 -4.364 -1.708 19.644 hybrid contribution 0.006 1.160 0.068 1.162 sum 19.083 -3.203 -1.639 19.419 Atomic orbital electron populations 1.69891 1.06264 1.27031 1.50398 1.24976 0.94677 0.98990 0.94321 0.86829 0.79915 0.83582 0.77794 1.20540 1.22472 1.19178 1.20898 0.88250 0.94756 1.51444 0.90581 1.19457 0.96897 0.91344 0.93660 0.95246 1.21994 0.92021 1.00757 1.01258 1.21998 0.98676 0.95444 1.01542 1.21767 0.97842 0.92463 0.89389 1.48271 1.08233 1.49450 1.27098 1.18982 0.85898 0.78691 0.82345 1.90693 1.74610 1.47256 1.29214 1.23056 0.92103 1.00949 1.04733 1.23016 1.00444 0.91834 1.00346 1.24198 0.97627 1.00310 0.96432 0.85288 1.22924 0.99008 0.95703 0.82599 1.89334 1.23433 1.92606 1.23942 1.22973 0.80804 0.95014 0.99444 1.21818 0.75470 0.99639 1.02504 0.92558 0.91858 0.93180 0.91616 0.92224 0.91533 0.90017 0.87489 0.87301 0.88355 0.91005 0.90627 0.88065 0.89613 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 2 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 3 Si 0.89 21.60 24.39 -169.99 -4.15 17.46 16 4 H -0.28 -6.50 6.86 56.52 0.39 -6.12 16 5 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16 7 C -0.52 -14.16 9.15 -34.44 -0.31 -14.47 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C 0.01 0.14 1.84 -91.65 -0.17 -0.03 16 10 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 11 C -0.12 -2.46 4.66 -26.69 -0.12 -2.59 16 12 C -0.14 -2.14 6.08 -26.61 -0.16 -2.30 16 13 C 0.11 1.49 6.25 -3.69 -0.02 1.47 16 14 N -0.60 -10.21 2.98 -172.73 -0.51 -10.73 16 15 C 0.55 9.46 7.24 -10.99 -0.08 9.38 16 16 O -0.54 -11.30 16.50 5.55 0.09 -11.21 16 17 C -0.20 -2.61 1.57 -154.10 -0.24 -2.86 16 18 C -0.12 -1.26 7.90 -26.73 -0.21 -1.48 16 19 C -0.17 -1.85 7.14 -89.05 -0.64 -2.49 16 20 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 21 C 0.07 0.71 7.57 37.93 0.29 1.00 16 22 O -0.37 -4.26 11.33 -35.23 -0.40 -4.66 16 23 C 0.09 1.06 7.40 37.94 0.28 1.34 16 24 C 0.13 2.58 5.66 -3.71 -0.02 2.56 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.92 5.00 -51.93 -0.26 0.66 16 32 H 0.11 0.98 8.06 -51.93 -0.42 0.56 16 33 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.10 0.98 8.14 -51.92 -0.42 0.55 16 38 H 0.09 1.91 7.00 -51.92 -0.36 1.55 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 303.96 15.07 4.58 4.58 Total: -1.00 -31.98 303.96 -6.96 -38.94 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.84 Total: 0.51 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -1.51 Total: -8.52 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.26 Total: -37.10 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.31 Total: -15.88 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.15 Total: 17.46 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.98 -6.96 -38.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689149862.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.651 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds