Wall clock time and date at job start Mon Mar 30 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00116 * 2 1 4 4 H 1.48503 * 109.47368 * 270.00253 * 3 2 1 5 5 H 1.48507 * 109.47069 * 30.00204 * 3 2 1 6 6 H 1.48504 * 109.47005 * 149.99975 * 3 2 1 7 7 C 1.37878 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99830 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00002 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.49600 * 59.93248 * 9 7 2 11 11 C 1.53048 * 109.52209 * 299.85549 * 9 7 2 12 12 C 1.53040 * 109.53692 * 178.66567 * 11 9 7 13 13 C 1.53201 * 109.31269 * 61.36397 * 12 11 9 14 14 N 1.46962 * 108.88838 * 305.44295 * 13 12 11 15 15 C 1.34772 * 120.65027 * 233.52948 * 14 13 12 16 16 O 1.21289 * 119.99207 * 174.86243 * 15 14 13 17 17 C 1.50690 * 120.00413 * 354.86480 * 15 14 13 18 18 C 1.53000 * 119.81073 * 67.33222 * 17 15 14 19 19 C 1.52998 * 60.65337 * 112.31541 * 18 17 15 20 20 H 1.09003 * 119.80613 * 247.69409 * 19 18 17 21 21 C 1.54479 * 118.07039 * 90.41256 * 19 18 17 22 22 O 1.44430 * 104.80178 * 321.12594 * 21 19 18 23 23 C 1.45921 * 105.86307 * 319.97468 * 22 21 19 24 24 C 1.46926 * 118.71214 * 53.35556 * 14 13 12 25 25 H 0.96997 * 120.00061 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.45524 * 298.68438 * 11 9 7 27 27 H 1.08992 * 109.46266 * 58.66048 * 11 9 7 28 28 H 1.08998 * 109.49647 * 181.31454 * 12 11 9 29 29 H 1.08996 * 109.49962 * 301.41699 * 12 11 9 30 30 H 1.09004 * 109.58355 * 65.15024 * 13 12 11 31 31 H 1.08997 * 109.58682 * 185.43375 * 13 12 11 32 32 H 1.09000 * 117.43319 * 219.99252 * 18 17 15 33 33 H 1.09000 * 117.43194 * 4.68806 * 18 17 15 34 34 H 1.08992 * 110.37177 * 79.95768 * 21 19 18 35 35 H 1.09003 * 110.37267 * 202.18773 * 21 19 18 36 36 H 1.09002 * 110.59518 * 280.94221 * 23 22 21 37 37 H 1.09007 * 110.84821 * 158.13412 * 23 22 21 38 38 H 1.09008 * 109.58296 * 186.78411 * 24 14 13 39 39 H 1.09001 * 109.58937 * 66.50108 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 0.0000 10 1 3.8749 -0.6799 0.8898 11 6 4.0234 -0.4752 -1.2503 12 6 5.5535 -0.4459 -1.2334 13 6 6.0880 -1.8815 -1.2482 14 7 5.4861 -2.6247 -0.1323 15 6 6.2615 -3.2784 0.7554 16 8 5.7594 -3.8095 1.7234 17 6 7.7520 -3.3493 0.5454 18 6 8.5961 -2.0775 0.6493 19 6 8.7598 -3.1743 1.7034 20 1 8.4428 -2.9909 2.7300 21 6 9.8160 -4.2731 1.4511 22 8 9.7300 -4.5497 0.0362 23 6 8.3078 -4.5243 -0.2894 24 6 4.0228 -2.6382 -0.0008 25 1 -0.4850 0.8400 -0.0004 26 1 3.6801 -1.0042 -2.1394 27 1 3.6411 0.5453 -1.2646 28 1 5.9168 0.0866 -2.1124 29 1 5.8977 0.0611 -0.3321 30 1 5.8210 -2.3611 -2.1899 31 1 7.1724 -1.8689 -1.1391 32 1 9.4031 -1.9500 -0.0722 33 1 8.0891 -1.1617 0.9532 34 1 10.8109 -3.9087 1.7067 35 1 9.5797 -5.1665 2.0292 36 1 7.8301 -5.4587 0.0055 37 1 8.1565 -4.3392 -1.3530 38 1 3.7444 -3.1249 0.9340 39 1 3.5855 -3.1802 -0.8393 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689149862.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:56 Heat of formation + Delta-G solvation = -64.961896 kcal Electronic energy + Delta-G solvation = -21015.117701 eV Core-core repulsion = 17922.908541 eV Total energy + Delta-G solvation = -3092.209160 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.02403 -40.28119 -38.47586 -35.65802 -35.15373 -33.51113 -32.25503 -29.98440 -27.34017 -26.93495 -26.51165 -23.62563 -23.24107 -21.83182 -21.16544 -19.71501 -18.90423 -18.28905 -17.39518 -16.87214 -16.77675 -16.32108 -16.06621 -15.69916 -15.44270 -14.92338 -14.85006 -14.53925 -14.15319 -13.94755 -13.80709 -13.68164 -13.13023 -12.99237 -12.90183 -12.50913 -12.45932 -12.12100 -11.94758 -11.65454 -11.53019 -11.32798 -11.21373 -11.09902 -10.70980 -10.64640 -10.60472 -9.61718 -8.33770 -6.39237 1.26450 1.34139 1.43401 1.44486 1.88718 2.29258 2.32276 2.78121 3.01180 3.35921 3.50394 3.57158 3.82373 3.98650 4.03697 4.07539 4.21419 4.28425 4.42126 4.48460 4.58731 4.60804 4.66102 4.70218 4.72338 4.77386 4.80995 4.89204 4.95450 5.05607 5.09057 5.12436 5.34743 5.39824 5.58830 5.62303 5.71561 6.22955 6.44076 6.67003 7.08547 7.26581 8.83008 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.037022 B = 0.005242 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.116096 B = 5340.403884 C = 5554.134466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.255 1.255 5 H -0.302 1.302 6 H -0.253 1.253 7 C -0.524 4.524 8 H 0.033 0.967 9 C 0.010 3.990 10 H 0.012 0.988 11 C -0.122 4.122 12 C -0.132 4.132 13 C 0.106 3.894 14 N -0.599 5.599 15 C 0.551 3.449 16 O -0.591 6.591 17 C -0.220 4.220 18 C -0.098 4.098 19 C -0.167 4.167 20 H 0.120 0.880 21 C 0.075 3.925 22 O -0.379 6.379 23 C 0.099 3.901 24 C 0.137 3.863 25 H 0.267 0.733 26 H 0.065 0.935 27 H 0.038 0.962 28 H 0.106 0.894 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.133 0.867 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.122 0.878 38 H 0.053 0.947 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.374 -2.820 -3.665 23.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.183 4.183 3 Si 0.781 3.219 4 H -0.181 1.181 5 H -0.230 1.230 6 H -0.177 1.177 7 C -0.562 4.562 8 H 0.051 0.949 9 C -0.010 4.010 10 H 0.030 0.970 11 C -0.160 4.160 12 C -0.170 4.170 13 C -0.015 4.015 14 N -0.330 5.330 15 C 0.339 3.661 16 O -0.472 6.472 17 C -0.223 4.223 18 C -0.135 4.135 19 C -0.186 4.186 20 H 0.138 0.862 21 C -0.001 4.001 22 O -0.297 6.297 23 C 0.023 3.977 24 C 0.014 3.986 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.124 0.876 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.134 0.866 32 H 0.151 0.849 33 H 0.126 0.874 34 H 0.143 0.857 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.140 0.860 38 H 0.072 0.928 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 23.131 -3.067 -3.333 23.570 hybrid contribution -1.323 0.642 0.643 1.605 sum 21.808 -2.425 -2.690 22.107 Atomic orbital electron populations 1.70048 1.08273 1.28174 1.52313 1.25872 0.95431 1.03091 0.93926 0.85757 0.78742 0.78314 0.79051 1.18077 1.22965 1.17726 1.21217 0.91060 0.93218 1.50729 0.94868 1.19330 0.93742 0.93174 0.94762 0.97026 1.21873 0.95817 0.99209 0.99086 1.21987 0.94654 0.96975 1.03393 1.22074 0.99520 0.91099 0.88794 1.48309 1.06540 1.49913 1.28221 1.19738 0.87776 0.77350 0.81191 1.90665 1.76025 1.49195 1.31337 1.22939 0.88967 1.03397 1.07028 1.23129 0.99745 0.90628 0.99960 1.24359 0.97165 1.01136 0.95975 0.86205 1.23062 0.99869 0.95275 0.81912 1.89337 1.23070 1.92611 1.24724 1.22969 0.80714 0.93811 1.00249 1.21365 0.78394 0.97811 1.00996 0.92424 0.91587 0.94413 0.87591 0.92432 0.89557 0.86581 0.84891 0.87430 0.85686 0.90908 0.91697 0.86013 0.92803 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.51 13.96 21.45 0.30 -59.22 16 2 C 0.01 0.82 5.45 84.65 0.46 1.28 16 3 Si 0.95 44.62 24.39 68.60 1.67 46.30 16 4 H -0.26 -10.94 6.86 99.48 0.68 -10.26 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 6 H -0.25 -11.14 6.53 99.48 0.65 -10.49 16 7 C -0.52 -30.07 9.15 25.60 0.23 -29.83 16 8 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 9 C 0.01 0.44 1.84 -11.46 -0.02 0.42 16 10 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 11 C -0.12 -4.64 4.66 30.62 0.14 -4.50 16 12 C -0.13 -3.51 6.08 30.67 0.19 -3.33 16 13 C 0.11 2.49 6.25 86.36 0.54 3.03 16 14 N -0.60 -19.68 2.98 -818.80 -2.44 -22.12 16 15 C 0.55 18.39 7.24 87.65 0.63 19.02 16 16 O -0.59 -25.49 16.50 -3.06 -0.05 -25.55 16 17 C -0.22 -5.04 1.57 -51.91 -0.08 -5.12 16 18 C -0.10 -1.67 7.90 30.59 0.24 -1.42 16 19 C -0.17 -3.29 7.14 -9.78 -0.07 -3.36 16 20 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 21 C 0.08 1.20 7.57 72.48 0.55 1.75 16 22 O -0.38 -7.24 11.33 -148.98 -1.69 -8.93 16 23 C 0.10 1.94 7.40 72.49 0.54 2.48 16 24 C 0.14 5.73 5.66 86.36 0.49 6.22 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.04 1.53 3.27 -2.39 -0.01 1.52 16 28 H 0.11 2.07 8.14 -2.39 -0.02 2.06 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.12 1.98 5.00 -2.39 -0.01 1.97 16 32 H 0.13 1.65 8.06 -2.39 -0.02 1.63 16 33 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.05 2.56 7.00 -2.38 -0.02 2.55 16 39 H 0.07 2.70 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -73.95 303.96 2.59 -71.35 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.96 Total: 11.52 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 3.84 Total: -13.36 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -2.14 Total: -81.34 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -1.74 Total: -34.48 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.67 Total: 46.30 kcal Total: -73.95 2.59 -71.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689149862.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.392 kcal (2) G-P(sol) polarization free energy of solvation -73.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds