Wall clock time and date at job start Mon Mar 30 2020 05:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00558 * 2 1 4 4 H 1.48500 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47318 * 299.99918 * 3 2 1 6 6 H 1.48510 * 109.46680 * 59.99952 * 3 2 1 7 7 C 1.37878 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00363 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99827 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47248 * 175.92448 * 9 7 2 11 11 C 1.40154 * 110.99956 * 163.94355 * 10 9 7 12 12 C 1.38806 * 119.98738 * 58.09204 * 11 10 9 13 13 C 1.38277 * 120.12820 * 180.02562 * 12 11 10 14 14 C 1.38644 * 120.09122 * 0.02562 * 13 12 11 15 15 N 1.40345 * 120.01477 * 180.02562 * 14 13 12 16 16 C 1.39382 * 119.97102 * 359.97438 * 14 13 12 17 17 N 1.40186 * 120.06817 * 180.02562 * 16 14 13 18 18 C 1.38756 * 119.87043 * 0.27066 * 16 14 13 19 19 F 1.35095 * 120.04543 * 179.70652 * 18 16 14 20 20 C 1.46904 * 110.99779 * 287.89470 * 10 9 7 21 21 C 1.53001 * 117.49721 * 231.76474 * 20 10 9 22 22 C 1.52995 * 117.49648 * 163.14428 * 20 10 9 23 23 H 0.97005 * 119.99326 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47289 * 55.91946 * 9 7 2 25 25 H 1.09001 * 109.46880 * 295.91999 * 9 7 2 26 26 H 1.08005 * 119.93532 * 0.02562 * 12 11 10 27 27 H 1.08003 * 119.95223 * 180.02562 * 13 12 11 28 28 H 0.97003 * 119.99521 * 179.97438 * 15 14 13 29 29 H 0.96993 * 120.00200 * 359.97438 * 15 14 13 30 30 H 0.97006 * 119.99559 * 359.97438 * 17 16 14 31 31 H 0.96994 * 120.00589 * 179.72263 * 17 16 14 32 32 H 1.08999 * 115.54956 * 17.47605 * 20 10 9 33 33 H 1.08996 * 117.49940 * 0.02562 * 21 20 10 34 34 H 1.09004 * 117.49315 * 145.01933 * 21 20 10 35 35 H 1.09002 * 117.50074 * 214.97713 * 22 20 10 36 36 H 1.09006 * 117.49978 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2024 -3.6141 -0.0973 11 6 1.5950 -4.8256 0.2599 12 6 0.4734 -5.2685 -0.4275 13 6 -0.1285 -6.4630 -0.0773 14 6 0.3863 -7.2222 0.9624 15 7 -0.2256 -8.4347 1.3162 16 6 1.5124 -6.7813 1.6553 17 7 2.0349 -7.5475 2.7065 18 6 2.1123 -5.5798 1.3060 19 9 3.2003 -5.1462 1.9791 20 6 2.7836 -3.6935 -1.4441 21 6 2.7279 -5.0451 -2.1590 22 6 4.0588 -4.5213 -1.6155 23 1 -0.4849 0.8401 0.0004 24 1 0.5708 -2.5261 -0.8509 25 1 0.6799 -2.5889 0.9246 26 1 0.0700 -4.6788 -1.2376 27 1 -1.0009 -6.8051 -0.6143 28 1 0.1350 -8.9658 2.0434 29 1 -1.0090 -8.7416 0.8336 30 1 1.6125 -8.3854 2.9525 31 1 2.8210 -7.2418 3.1855 32 1 2.6802 -2.7963 -2.0544 33 1 2.2596 -5.8752 -1.6301 34 1 2.5876 -5.0372 -3.2399 35 1 4.7941 -4.1691 -2.3389 36 1 4.4662 -5.0074 -0.7290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699360878.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:44 Heat of formation + Delta-G solvation = 27.946777 kcal Electronic energy + Delta-G solvation = -20398.694491 eV Core-core repulsion = 17219.346599 eV Total energy + Delta-G solvation = -3179.347892 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.129 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.10221 -39.65571 -37.74906 -34.37310 -33.60531 -33.24382 -31.69562 -28.70946 -27.60260 -25.71167 -22.51708 -22.21991 -21.90958 -21.48016 -19.51983 -17.81410 -17.34284 -16.47448 -16.28978 -15.67939 -15.47302 -14.90366 -14.70931 -14.51104 -14.31116 -14.24792 -13.52851 -12.86000 -12.66018 -12.17102 -12.03149 -11.77660 -11.33088 -11.28782 -11.08808 -10.80807 -10.64571 -10.53813 -10.09611 -9.94238 -9.68230 -9.56631 -9.18439 -8.39069 -7.64100 -7.23342 -6.77080 -5.98437 -3.99624 1.70398 1.86110 3.34916 3.42314 3.48548 3.72272 3.99869 4.09100 4.42549 4.52343 4.81915 4.93061 5.27687 5.35995 5.48515 5.55165 5.65627 5.78137 5.87641 6.05134 6.16839 6.33255 6.37746 6.55641 6.69288 6.73190 6.90428 6.93944 7.28500 7.32754 7.37489 7.73971 7.76278 7.86922 7.92296 8.15164 8.20939 8.64122 9.09607 9.64423 11.11876 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.005824 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.629539 B = 4806.322489 C = 4961.442280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.504 4.504 8 H 0.066 0.934 9 C 0.202 3.798 10 N -0.472 5.472 11 C 0.073 3.927 12 C -0.118 4.118 13 C -0.159 4.159 14 C 0.154 3.846 15 N -0.885 5.885 16 C 0.111 3.889 17 N -0.883 5.883 18 C 0.082 3.918 19 F -0.132 7.132 20 C 0.055 3.945 21 C -0.222 4.222 22 C -0.181 4.181 23 H 0.260 0.740 24 H 0.004 0.996 25 H 0.029 0.971 26 H 0.128 0.872 27 H 0.121 0.879 28 H 0.388 0.612 29 H 0.397 0.603 30 H 0.390 0.610 31 H 0.400 0.600 32 H 0.122 0.878 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.805 -16.788 0.475 16.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.543 4.543 8 H 0.085 0.915 9 C 0.079 3.921 10 N -0.191 5.191 11 C -0.024 4.024 12 C -0.140 4.140 13 C -0.183 4.183 14 C 0.050 3.950 15 N -0.429 5.429 16 C 0.005 3.995 17 N -0.428 5.428 18 C 0.056 3.944 19 F -0.110 7.110 20 C -0.053 4.053 21 C -0.261 4.261 22 C -0.219 4.219 23 H 0.070 0.930 24 H 0.022 0.978 25 H 0.047 0.953 26 H 0.146 0.854 27 H 0.139 0.861 28 H 0.215 0.785 29 H 0.226 0.774 30 H 0.218 0.782 31 H 0.228 0.772 32 H 0.140 0.860 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.079 -16.389 0.775 16.443 hybrid contribution -0.123 0.319 0.025 0.343 sum 0.956 -16.069 0.801 16.118 Atomic orbital electron populations 1.69976 1.06033 1.26634 1.51240 1.24976 0.94846 0.99254 0.95501 0.86441 0.80202 0.83380 0.77425 1.19575 1.21149 1.21086 1.21220 0.93815 0.89599 1.49667 0.91539 1.19827 0.89341 0.86263 0.96667 1.59595 1.35629 1.01003 1.22883 1.18609 0.94714 0.93444 0.95639 1.21283 0.95881 0.96072 1.00768 1.20279 1.02349 0.96435 0.99200 1.16955 0.92970 0.88839 0.96253 1.42139 1.35769 1.22896 1.42107 1.17007 0.95837 0.92733 0.93888 1.41940 1.36164 1.26001 1.38668 1.16765 0.88353 0.93299 0.95961 1.91414 1.51435 1.89474 1.78723 1.22580 0.98845 0.93954 0.89958 1.23579 1.02384 1.00260 0.99870 1.22982 0.91306 1.05200 1.02413 0.93013 0.97800 0.95251 0.85382 0.86076 0.78458 0.77434 0.78205 0.77153 0.86005 0.88396 0.89662 0.89437 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.50 -14.36 8.62 -34.44 -0.30 -14.66 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.20 5.35 4.13 -4.97 -0.02 5.33 16 10 N -0.47 -10.71 4.45 -164.79 -0.73 -11.44 16 11 C 0.07 1.47 3.35 -83.58 -0.28 1.19 16 12 C -0.12 -2.08 6.75 -39.36 -0.27 -2.35 16 13 C -0.16 -2.32 9.89 -39.42 -0.39 -2.71 16 14 C 0.15 2.12 6.78 -83.38 -0.57 1.56 16 15 N -0.88 -8.38 9.10 32.58 0.30 -8.08 16 16 C 0.11 1.70 6.78 -83.42 -0.57 1.13 16 17 N -0.88 -10.27 9.09 32.57 0.30 -9.98 16 18 C 0.08 1.54 7.31 -39.12 -0.29 1.25 16 19 F -0.13 -2.64 16.44 2.25 0.04 -2.60 16 20 C 0.06 1.11 5.56 -67.71 -0.38 0.74 16 21 C -0.22 -3.74 9.00 -26.73 -0.24 -3.98 16 22 C -0.18 -3.16 10.35 -26.73 -0.28 -3.44 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.00 0.11 7.56 -51.93 -0.39 -0.28 16 25 H 0.03 0.85 7.97 -51.93 -0.41 0.43 16 26 H 0.13 2.32 7.56 -52.48 -0.40 1.92 16 27 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 28 H 0.39 2.92 7.00 -40.82 -0.29 2.64 16 29 H 0.40 3.01 8.85 -40.82 -0.36 2.65 16 30 H 0.39 3.35 7.00 -40.82 -0.29 3.07 16 31 H 0.40 4.53 8.32 -40.82 -0.34 4.19 16 32 H 0.12 2.61 7.60 -51.93 -0.39 2.22 16 33 H 0.10 1.67 5.50 -51.93 -0.29 1.39 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 303.16 15.07 4.57 4.57 Total: -1.00 -31.67 303.16 -7.87 -39.54 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -4.39 Total: 11.62 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -3.66 Total: -14.46 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.60 Total: -55.55 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.04 Total: -2.60 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.67 -7.87 -39.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699360878.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.488 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds