Wall clock time and date at job start Mon Mar 30 2020 05:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00558 * 2 1 4 4 H 1.48500 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47318 * 299.99918 * 3 2 1 6 6 H 1.48510 * 109.46680 * 59.99952 * 3 2 1 7 7 C 1.37878 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00363 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99827 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47248 * 175.92448 * 9 7 2 11 11 C 1.40154 * 110.99956 * 163.94355 * 10 9 7 12 12 C 1.38806 * 119.98738 * 58.09204 * 11 10 9 13 13 C 1.38277 * 120.12820 * 180.02562 * 12 11 10 14 14 C 1.38644 * 120.09122 * 0.02562 * 13 12 11 15 15 N 1.40345 * 120.01477 * 180.02562 * 14 13 12 16 16 C 1.39382 * 119.97102 * 359.97438 * 14 13 12 17 17 N 1.40186 * 120.06817 * 180.02562 * 16 14 13 18 18 C 1.38756 * 119.87043 * 0.27066 * 16 14 13 19 19 F 1.35095 * 120.04543 * 179.70652 * 18 16 14 20 20 C 1.46904 * 110.99779 * 287.89470 * 10 9 7 21 21 C 1.53001 * 117.49721 * 231.76474 * 20 10 9 22 22 C 1.52995 * 117.49648 * 163.14428 * 20 10 9 23 23 H 0.97005 * 119.99326 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47289 * 55.91946 * 9 7 2 25 25 H 1.09001 * 109.46880 * 295.91999 * 9 7 2 26 26 H 1.08005 * 119.93532 * 0.02562 * 12 11 10 27 27 H 1.08003 * 119.95223 * 180.02562 * 13 12 11 28 28 H 0.97003 * 119.99521 * 179.97438 * 15 14 13 29 29 H 0.96993 * 120.00200 * 359.97438 * 15 14 13 30 30 H 0.97006 * 119.99559 * 359.97438 * 17 16 14 31 31 H 0.96994 * 120.00589 * 179.72263 * 17 16 14 32 32 H 1.08999 * 115.54956 * 17.47605 * 20 10 9 33 33 H 1.08996 * 117.49940 * 0.02562 * 21 20 10 34 34 H 1.09004 * 117.49315 * 145.01933 * 21 20 10 35 35 H 1.09002 * 117.50074 * 214.97713 * 22 20 10 36 36 H 1.09006 * 117.49978 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2024 -3.6141 -0.0973 11 6 1.5950 -4.8256 0.2599 12 6 0.4734 -5.2685 -0.4275 13 6 -0.1285 -6.4630 -0.0773 14 6 0.3863 -7.2222 0.9624 15 7 -0.2256 -8.4347 1.3162 16 6 1.5124 -6.7813 1.6553 17 7 2.0349 -7.5475 2.7065 18 6 2.1123 -5.5798 1.3060 19 9 3.2003 -5.1462 1.9791 20 6 2.7836 -3.6935 -1.4441 21 6 2.7279 -5.0451 -2.1590 22 6 4.0588 -4.5213 -1.6155 23 1 -0.4849 0.8401 0.0004 24 1 0.5708 -2.5261 -0.8509 25 1 0.6799 -2.5889 0.9246 26 1 0.0700 -4.6788 -1.2376 27 1 -1.0009 -6.8051 -0.6143 28 1 0.1350 -8.9658 2.0434 29 1 -1.0090 -8.7416 0.8336 30 1 1.6125 -8.3854 2.9525 31 1 2.8210 -7.2418 3.1855 32 1 2.6802 -2.7963 -2.0544 33 1 2.2596 -5.8752 -1.6301 34 1 2.5876 -5.0372 -3.2399 35 1 4.7941 -4.1691 -2.3389 36 1 4.4662 -5.0074 -0.7290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699360878.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:44 Heat of formation + Delta-G solvation = 4.845359 kcal Electronic energy + Delta-G solvation = -20399.696244 eV Core-core repulsion = 17219.346599 eV Total energy + Delta-G solvation = -3180.349645 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.55445 -41.01830 -39.11030 -35.76683 -35.18539 -34.59798 -33.41592 -30.06280 -29.17501 -27.37373 -24.35564 -23.63737 -23.34228 -22.82476 -21.00515 -18.95277 -18.66110 -18.31988 -17.67402 -17.37555 -16.57876 -16.36548 -16.24332 -16.08663 -15.70039 -15.55941 -15.05637 -14.45545 -14.03789 -13.93562 -13.65275 -13.37444 -12.95872 -12.87311 -12.64741 -12.48681 -12.38636 -12.08585 -11.57855 -11.55813 -11.38809 -11.10435 -10.89158 -10.58606 -8.92723 -8.89757 -8.19134 -7.84826 -6.28972 0.40530 0.56313 1.41066 1.42037 1.56374 2.41270 2.75860 2.79541 2.86198 3.04988 3.13236 3.34304 3.68447 4.01288 4.07845 4.17270 4.29008 4.39391 4.61533 4.80836 4.84605 4.92868 5.03767 5.10925 5.20500 5.23786 5.27988 5.34788 5.64023 5.67136 5.77458 6.12889 6.27933 6.34028 6.67790 6.86707 6.88860 6.93496 7.08553 7.40468 8.91968 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.005824 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.629539 B = 4806.322489 C = 4961.442280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.226 3.774 10 N -0.482 5.482 11 C 0.038 3.962 12 C -0.129 4.129 13 C -0.152 4.152 14 C 0.169 3.831 15 N -0.864 5.864 16 C 0.117 3.883 17 N -0.868 5.868 18 C 0.051 3.949 19 F -0.147 7.147 20 C 0.018 3.982 21 C -0.192 4.192 22 C -0.166 4.166 23 H 0.265 0.735 24 H -0.019 1.019 25 H -0.008 1.008 26 H 0.113 0.887 27 H 0.153 0.847 28 H 0.401 0.599 29 H 0.412 0.588 30 H 0.407 0.593 31 H 0.403 0.597 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.879 -18.806 0.405 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.193 4.193 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.101 3.899 10 N -0.201 5.201 11 C -0.059 4.059 12 C -0.151 4.151 13 C -0.176 4.176 14 C 0.062 3.938 15 N -0.409 5.409 16 C 0.010 3.990 17 N -0.414 5.414 18 C 0.025 3.975 19 F -0.126 7.126 20 C -0.090 4.090 21 C -0.230 4.230 22 C -0.204 4.204 23 H 0.074 0.926 24 H -0.002 1.002 25 H 0.010 0.990 26 H 0.131 0.869 27 H 0.171 0.829 28 H 0.231 0.769 29 H 0.243 0.757 30 H 0.239 0.761 31 H 0.232 0.768 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.145 -18.496 0.730 18.546 hybrid contribution -0.213 0.773 0.097 0.808 sum 0.933 -17.723 0.827 17.767 Atomic orbital electron populations 1.70093 1.07603 1.27836 1.51757 1.25871 0.95746 1.02978 0.94727 0.85334 0.78853 0.78574 0.77844 1.19080 1.19957 1.20430 1.21456 0.93518 0.91013 1.50040 0.92410 1.19327 0.89255 0.87705 0.93614 1.59413 1.34758 1.01406 1.24544 1.18713 0.96491 0.93163 0.97501 1.21156 0.95829 0.97398 1.00766 1.20517 1.02726 0.95109 0.99281 1.16986 0.92039 0.89750 0.95064 1.42088 1.35609 1.21069 1.42129 1.17029 0.95788 0.91811 0.94396 1.41913 1.36019 1.26121 1.37324 1.16985 0.89015 0.94991 0.96490 1.91357 1.52296 1.89932 1.79050 1.22506 1.01871 0.95035 0.89572 1.23555 1.01061 0.97693 1.00725 1.23009 0.91283 1.03598 1.02499 0.92620 1.00170 0.98952 0.86892 0.82947 0.76901 0.75733 0.76150 0.76802 0.88280 0.88327 0.87361 0.87165 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 2 C 0.00 0.28 5.46 84.66 0.46 0.75 16 3 Si 0.97 45.80 29.54 68.60 2.03 47.82 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 7 C -0.52 -31.16 8.62 25.60 0.22 -30.93 16 8 H 0.06 3.47 7.81 -2.91 -0.02 3.44 16 9 C 0.23 12.78 4.13 85.56 0.35 13.13 16 10 N -0.48 -23.13 4.45 -675.26 -3.00 -26.13 16 11 C 0.04 1.59 3.35 38.12 0.13 1.72 16 12 C -0.13 -4.65 6.75 22.42 0.15 -4.50 16 13 C -0.15 -4.17 9.89 22.38 0.22 -3.95 16 14 C 0.17 4.18 6.78 38.15 0.26 4.44 16 15 N -0.86 -12.76 9.10 -50.82 -0.46 -13.22 16 16 C 0.12 3.40 6.78 38.20 0.26 3.66 16 17 N -0.87 -18.14 9.09 -50.85 -0.46 -18.60 16 18 C 0.05 1.94 7.31 22.57 0.17 2.10 16 19 F -0.15 -6.08 16.44 44.97 0.74 -5.34 16 20 C 0.02 0.77 5.56 44.91 0.25 1.02 16 21 C -0.19 -6.36 9.00 30.59 0.28 -6.08 16 22 C -0.17 -5.76 10.35 30.59 0.32 -5.44 16 23 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 24 H -0.02 -1.16 7.56 -2.38 -0.02 -1.18 16 25 H -0.01 -0.48 7.97 -2.39 -0.02 -0.50 16 26 H 0.11 4.31 7.56 -2.91 -0.02 4.29 16 27 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 28 H 0.40 4.24 7.00 -92.71 -0.65 3.59 16 29 H 0.41 4.33 8.85 -92.71 -0.82 3.50 16 30 H 0.41 5.58 7.00 -92.70 -0.65 4.93 16 31 H 0.40 8.44 8.32 -92.71 -0.77 7.66 16 32 H 0.10 4.53 7.60 -2.39 -0.02 4.51 16 33 H 0.10 3.30 5.50 -2.39 -0.01 3.29 16 34 H 0.11 3.06 8.14 -2.38 -0.02 3.04 16 35 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 36 H 0.08 2.90 8.14 -2.38 -0.02 2.89 16 Total: -1.00 -72.12 303.16 0.45 -71.67 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -1.73 Total: 24.90 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: 3.06 Total: -24.09 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -3.64 Total: -114.96 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 0.74 Total: -5.34 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -72.12 0.45 -71.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699360878.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.520 kcal (2) G-P(sol) polarization free energy of solvation -72.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds