Wall clock time and date at job start Mon Mar 30 2020 05:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30867 * 126.18993 * 2 1 4 4 C 1.34549 * 107.27042 * 179.97438 * 3 2 1 5 5 C 1.47871 * 126.04625 * 180.02562 * 4 3 2 6 6 O 1.21553 * 120.00313 * 7.00144 * 5 4 3 7 7 N 1.34782 * 119.99445 * 187.00213 * 5 4 3 8 8 C 1.46968 * 120.59039 * 185.63915 * 7 5 4 9 9 C 1.53371 * 108.63825 * 124.74758 * 8 7 5 10 10 N 1.46971 * 108.62742 * 49.42443 * 9 8 7 11 11 C 1.36938 * 120.59014 * 124.75803 * 10 9 8 12 12 H 1.08001 * 119.99425 * 213.72823 * 11 10 9 13 13 C 1.38809 * 120.00503 * 33.72714 * 11 10 9 14 14 N 1.31621 * 119.99849 * 0.23618 * 13 11 10 15 15 Si 1.86803 * 120.00203 * 180.23622 * 13 11 10 16 16 H 1.48495 * 109.46913 * 59.99958 * 15 13 11 17 17 H 1.48503 * 109.46880 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46699 * 299.99911 * 15 13 11 19 19 C 1.46966 * 118.81361 * 304.76706 * 10 9 8 20 20 C 1.46961 * 120.59852 * 5.61281 * 7 5 4 21 21 N 1.31505 * 107.90290 * 0.26567 * 4 3 2 22 22 N 1.28851 * 108.69839 * 359.56278 * 21 4 3 23 23 H 0.96995 * 125.75188 * 180.16642 * 22 21 4 24 24 H 1.09004 * 109.47414 * 90.02195 * 1 2 3 25 25 H 1.09001 * 109.47420 * 210.02272 * 1 2 3 26 26 H 1.09000 * 109.47053 * 330.02748 * 1 2 3 27 27 H 1.09005 * 109.61016 * 4.99893 * 8 7 5 28 28 H 1.09002 * 109.60846 * 244.49394 * 8 7 5 29 29 H 1.08998 * 109.60667 * 169.16290 * 9 8 7 30 30 H 1.09001 * 109.60973 * 289.51256 * 9 8 7 31 31 H 0.96999 * 120.00014 * 180.02562 * 14 13 11 32 32 H 1.08995 * 109.60779 * 174.97632 * 19 10 9 33 33 H 1.08999 * 109.60900 * 295.49136 * 19 10 9 34 34 H 1.09002 * 109.60902 * 115.50787 * 20 7 5 35 35 H 1.08998 * 109.60867 * 354.99583 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2797 1.0562 0.0000 4 6 3.5525 0.6199 0.0006 5 6 4.7633 1.4688 0.0013 6 8 4.6611 2.6732 0.1298 7 7 5.9802 0.9069 -0.1405 8 6 7.1983 1.7202 -0.0186 9 6 8.1002 1.0946 1.0526 10 7 8.2328 -0.3424 0.7738 11 6 9.4692 -0.9131 0.6299 12 1 9.6087 -1.7324 -0.0599 13 6 10.5432 -0.4387 1.3704 14 7 10.3721 0.5567 2.2144 15 14 12.2312 -1.2130 1.1691 16 1 12.6764 -1.0703 -0.2403 17 1 13.1990 -0.5302 2.0649 18 1 12.1602 -2.6536 1.5224 19 6 7.0147 -1.1556 0.6520 20 6 6.1129 -0.5299 -0.4191 21 7 3.5292 -0.6949 -0.0049 22 7 2.3016 -1.0863 0.0005 23 1 2.0007 -2.0084 0.0006 24 1 -0.3634 -0.0004 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5134 27 1 6.9322 2.7358 0.2748 28 1 7.7231 1.7383 -0.9737 29 1 9.0830 1.5650 1.0236 30 1 7.6541 1.2392 2.0365 31 1 11.1227 0.8884 2.7316 32 1 7.2808 -2.1711 0.3586 33 1 6.4900 -1.1737 1.6072 34 1 6.5605 -0.6719 -1.4028 35 1 5.1301 -1.0004 -0.3902 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700865821.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:32 Heat of formation + Delta-G solvation = 98.592897 kcal Electronic energy + Delta-G solvation = -20284.868276 eV Core-core repulsion = 17128.503791 eV Total energy + Delta-G solvation = -3156.364485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.55141 -39.29997 -36.70623 -34.04922 -33.49504 -32.99563 -31.12775 -30.30187 -28.25266 -27.02122 -24.75003 -23.23513 -22.57615 -21.83605 -20.47851 -19.01323 -18.14412 -17.14263 -16.57280 -16.13717 -15.29797 -14.81362 -14.54029 -14.35342 -13.79474 -13.51009 -13.40425 -13.29867 -13.15618 -13.06227 -12.36482 -12.25923 -11.37485 -10.98279 -10.87465 -10.69534 -10.63082 -10.59657 -10.18397 -10.10544 -9.96097 -9.85636 -9.63281 -9.43238 -8.52035 -8.19610 -6.57428 -5.79062 -3.34037 1.34218 2.10869 2.47779 3.16996 3.37000 3.42302 3.43000 3.61868 4.08333 4.26931 4.46235 4.64221 5.04812 5.11150 5.38359 5.43130 5.45224 5.81436 5.92899 5.96221 6.08477 6.18803 6.33781 6.41362 6.48057 6.58294 6.74542 6.88613 7.02968 7.35438 7.71599 7.74028 7.81506 8.03951 8.47262 8.54608 9.19527 9.78570 10.38006 11.25910 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.042914 B = 0.004655 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.308517 B = 6013.799773 C = 6457.592195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.213 3.787 3 N -0.461 5.461 4 C 0.171 3.829 5 C 0.600 3.400 6 O -0.528 6.528 7 N -0.577 5.577 8 C 0.087 3.913 9 C 0.154 3.846 10 N -0.594 5.594 11 C -0.255 4.255 12 H 0.065 0.935 13 C 0.007 3.993 14 N -0.906 5.906 15 Si 0.908 3.092 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.282 1.282 19 C 0.137 3.863 20 C 0.058 3.942 21 N -0.272 5.272 22 N -0.405 5.405 23 H 0.447 0.553 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.114 0.886 30 H 0.021 0.979 31 H 0.257 0.743 32 H 0.064 0.936 33 H 0.022 0.978 34 H 0.060 0.940 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.771 -5.183 -5.131 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 N -0.186 5.186 4 C -0.110 4.110 5 C 0.383 3.617 6 O -0.402 6.402 7 N -0.309 5.309 8 C -0.036 4.036 9 C 0.028 3.972 10 N -0.317 5.317 11 C -0.385 4.385 12 H 0.083 0.917 13 C -0.191 4.191 14 N -0.550 5.550 15 Si 0.737 3.263 16 H -0.209 1.209 17 H -0.215 1.215 18 H -0.209 1.209 19 C 0.010 3.990 20 C -0.068 4.068 21 N -0.111 5.111 22 N -0.127 5.127 23 H 0.293 0.707 24 H 0.108 0.892 25 H 0.101 0.899 26 H 0.116 0.884 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.125 -4.321 -4.940 18.339 hybrid contribution 0.569 -1.203 -0.030 1.332 sum -16.555 -5.525 -4.969 18.146 Atomic orbital electron populations 1.20308 0.83176 1.05012 1.04444 1.25016 0.97467 0.82542 1.01442 1.71283 1.00073 1.27924 1.19359 1.24071 0.93946 0.87445 1.05537 1.16503 0.80808 0.85878 0.78560 1.90772 1.85382 1.13272 1.50767 1.47890 1.04776 1.10680 1.67545 1.22715 0.83994 0.95011 1.01853 1.21400 0.99182 0.84518 0.92109 1.43979 1.00863 1.03207 1.83648 1.19150 0.85569 1.16089 1.17701 0.91719 1.25291 0.99174 0.98535 0.96144 1.69843 1.30728 1.27042 1.27383 0.86297 0.83577 0.78967 0.77436 1.20898 1.21543 1.20874 1.21234 0.88237 0.94643 0.94921 1.23274 1.03745 0.79918 0.99836 1.74170 1.00972 1.14532 1.21452 1.45281 1.03774 1.11161 1.52439 0.70708 0.89167 0.89863 0.88352 0.90019 0.91823 0.86790 0.96070 0.93301 0.91723 0.96008 0.92137 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.51 36.00 0.38 0.02 16 2 C 0.21 2.28 8.25 -155.52 -1.28 0.99 16 3 N -0.46 -7.46 11.41 -8.54 -0.10 -7.56 16 4 C 0.17 3.03 7.72 -156.35 -1.21 1.82 16 5 C 0.60 12.43 7.70 -12.32 -0.09 12.34 16 6 O -0.53 -12.31 16.52 5.32 0.09 -12.22 16 7 N -0.58 -11.76 2.95 -173.58 -0.51 -12.27 16 8 C 0.09 1.87 6.58 -3.59 -0.02 1.85 16 9 C 0.15 3.81 5.46 -3.59 -0.02 3.80 16 10 N -0.59 -15.01 2.97 -172.04 -0.51 -15.52 16 11 C -0.26 -6.92 9.58 -15.06 -0.14 -7.06 16 12 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 13 C 0.01 0.20 5.26 -17.43 -0.09 0.10 16 14 N -0.91 -25.98 10.64 55.49 0.59 -25.39 16 15 Si 0.91 21.39 29.55 -169.99 -5.02 16.37 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.14 2.90 6.67 -3.60 -0.02 2.88 16 20 C 0.06 1.06 6.47 -3.60 -0.02 1.04 16 21 N -0.27 -3.94 8.67 32.07 0.28 -3.66 16 22 N -0.40 -3.98 6.93 32.65 0.23 -3.75 16 23 H 0.45 2.23 8.96 -190.22 -1.70 0.52 16 24 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.73 7.02 -51.93 -0.36 1.37 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.11 3.08 5.83 -51.93 -0.30 2.78 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.12 2.00 3.73 -114.59 -0.43 1.57 16 LS Contribution 291.78 15.07 4.40 4.40 Total: -1.00 -35.10 291.78 -8.81 -43.92 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -5.72 Total: -2.09 kcal Atomic # 6 Polarization: 20.31 SS G_CDS: -2.53 Total: 17.78 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -0.03 Total: -68.16 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -35.10 -8.81 -43.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700865821.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.511 kcal (2) G-P(sol) polarization free energy of solvation -35.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds