Wall clock time and date at job start Mon Mar 30 2020 05:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30867 * 126.18993 * 2 1 4 4 C 1.34549 * 107.27042 * 179.97438 * 3 2 1 5 5 C 1.47871 * 126.04625 * 180.02562 * 4 3 2 6 6 O 1.21553 * 120.00313 * 7.00144 * 5 4 3 7 7 N 1.34782 * 119.99445 * 187.00213 * 5 4 3 8 8 C 1.46968 * 120.59039 * 185.63915 * 7 5 4 9 9 C 1.53371 * 108.63825 * 124.74758 * 8 7 5 10 10 N 1.46971 * 108.62742 * 49.42443 * 9 8 7 11 11 C 1.36938 * 120.59014 * 124.75803 * 10 9 8 12 12 H 1.08001 * 119.99425 * 213.72823 * 11 10 9 13 13 C 1.38809 * 120.00503 * 33.72714 * 11 10 9 14 14 N 1.31621 * 119.99849 * 0.23618 * 13 11 10 15 15 Si 1.86803 * 120.00203 * 180.23622 * 13 11 10 16 16 H 1.48495 * 109.46913 * 59.99958 * 15 13 11 17 17 H 1.48503 * 109.46880 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46699 * 299.99911 * 15 13 11 19 19 C 1.46966 * 118.81361 * 304.76706 * 10 9 8 20 20 C 1.46961 * 120.59852 * 5.61281 * 7 5 4 21 21 N 1.31505 * 107.90290 * 0.26567 * 4 3 2 22 22 N 1.28851 * 108.69839 * 359.56278 * 21 4 3 23 23 H 0.96995 * 125.75188 * 180.16642 * 22 21 4 24 24 H 1.09004 * 109.47414 * 90.02195 * 1 2 3 25 25 H 1.09001 * 109.47420 * 210.02272 * 1 2 3 26 26 H 1.09000 * 109.47053 * 330.02748 * 1 2 3 27 27 H 1.09005 * 109.61016 * 4.99893 * 8 7 5 28 28 H 1.09002 * 109.60846 * 244.49394 * 8 7 5 29 29 H 1.08998 * 109.60667 * 169.16290 * 9 8 7 30 30 H 1.09001 * 109.60973 * 289.51256 * 9 8 7 31 31 H 0.96999 * 120.00014 * 180.02562 * 14 13 11 32 32 H 1.08995 * 109.60779 * 174.97632 * 19 10 9 33 33 H 1.08999 * 109.60900 * 295.49136 * 19 10 9 34 34 H 1.09002 * 109.60902 * 115.50787 * 20 7 5 35 35 H 1.08998 * 109.60867 * 354.99583 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2797 1.0562 0.0000 4 6 3.5525 0.6199 0.0006 5 6 4.7633 1.4688 0.0013 6 8 4.6611 2.6732 0.1298 7 7 5.9802 0.9069 -0.1405 8 6 7.1983 1.7202 -0.0186 9 6 8.1002 1.0946 1.0526 10 7 8.2328 -0.3424 0.7738 11 6 9.4692 -0.9131 0.6299 12 1 9.6087 -1.7324 -0.0599 13 6 10.5432 -0.4387 1.3704 14 7 10.3721 0.5567 2.2144 15 14 12.2312 -1.2130 1.1691 16 1 12.6764 -1.0703 -0.2403 17 1 13.1990 -0.5302 2.0649 18 1 12.1602 -2.6536 1.5224 19 6 7.0147 -1.1556 0.6520 20 6 6.1129 -0.5299 -0.4191 21 7 3.5292 -0.6949 -0.0049 22 7 2.3016 -1.0863 0.0005 23 1 2.0007 -2.0084 0.0006 24 1 -0.3634 -0.0004 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5134 27 1 6.9322 2.7358 0.2748 28 1 7.7231 1.7383 -0.9737 29 1 9.0830 1.5650 1.0236 30 1 7.6541 1.2392 2.0365 31 1 11.1227 0.8884 2.7316 32 1 7.2808 -2.1711 0.3586 33 1 6.4900 -1.1737 1.6072 34 1 6.5605 -0.6719 -1.4028 35 1 5.1301 -1.0004 -0.3902 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700865821.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:31 Heat of formation + Delta-G solvation = 73.357016 kcal Electronic energy + Delta-G solvation = -20285.962586 eV Core-core repulsion = 17128.503791 eV Total energy + Delta-G solvation = -3157.458795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.60235 -40.93339 -38.48619 -35.80036 -34.58142 -34.04855 -33.05744 -31.96409 -29.24228 -28.67454 -26.36050 -24.95194 -24.24422 -22.79545 -22.12892 -20.54943 -19.28681 -18.84067 -17.93918 -17.56796 -16.94684 -16.74352 -16.10553 -15.45342 -15.38464 -15.25029 -15.02500 -14.82819 -14.17624 -14.00165 -13.77460 -13.33189 -13.04222 -12.84056 -12.58896 -12.47301 -12.20541 -11.99662 -11.94863 -11.80969 -11.73093 -11.39038 -11.10467 -10.60481 -10.54540 -9.89747 -8.58954 -7.85436 -5.44960 0.15921 1.03686 1.49809 1.50547 1.52167 1.58735 1.88289 2.16709 2.50773 2.95172 3.28612 3.29813 3.63015 3.70667 4.23952 4.26903 4.41452 4.53851 4.63255 4.65052 4.74124 4.76112 4.78392 4.92496 5.05191 5.14358 5.25131 5.34713 5.48807 5.62709 5.69570 5.99443 6.28198 6.41511 6.81639 7.07499 7.12451 7.77817 8.34203 9.17577 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.042914 B = 0.004655 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.308517 B = 6013.799773 C = 6457.592195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.233 3.767 3 N -0.506 5.506 4 C 0.139 3.861 5 C 0.597 3.403 6 O -0.565 6.565 7 N -0.582 5.582 8 C 0.100 3.900 9 C 0.166 3.834 10 N -0.611 5.611 11 C -0.267 4.267 12 H 0.074 0.926 13 C -0.047 4.047 14 N -0.938 5.938 15 Si 0.976 3.024 16 H -0.274 1.274 17 H -0.296 1.296 18 H -0.275 1.275 19 C 0.136 3.864 20 C 0.069 3.931 21 N -0.272 5.272 22 N -0.379 5.379 23 H 0.471 0.529 24 H 0.112 0.888 25 H 0.122 0.878 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.089 0.911 30 H -0.009 1.009 31 H 0.252 0.748 32 H 0.081 0.919 33 H 0.011 0.989 34 H 0.068 0.932 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.790 -7.533 -6.250 22.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.043 4.043 3 N -0.233 5.233 4 C -0.141 4.141 5 C 0.382 3.618 6 O -0.442 6.442 7 N -0.314 5.314 8 C -0.023 4.023 9 C 0.039 3.961 10 N -0.335 5.335 11 C -0.396 4.396 12 H 0.092 0.908 13 C -0.242 4.242 14 N -0.584 5.584 15 Si 0.803 3.197 16 H -0.200 1.200 17 H -0.222 1.222 18 H -0.200 1.200 19 C 0.010 3.990 20 C -0.056 4.056 21 N -0.114 5.114 22 N -0.105 5.105 23 H 0.323 0.677 24 H 0.131 0.869 25 H 0.140 0.860 26 H 0.115 0.885 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.009 0.991 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.029 0.971 34 H 0.086 0.914 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -19.190 -6.739 -6.080 21.228 hybrid contribution 1.016 -0.554 0.332 1.204 sum -18.174 -7.293 -5.749 20.409 Atomic orbital electron populations 1.20657 0.78867 1.06838 1.06401 1.25907 0.99174 0.81145 0.98119 1.71221 0.99964 1.30716 1.21400 1.23378 0.93501 0.88138 1.09045 1.16889 0.81671 0.85889 0.77330 1.90729 1.86155 1.15028 1.52255 1.47920 1.04465 1.11282 1.67687 1.22369 0.84271 0.94792 1.00891 1.21069 0.98200 0.85050 0.91737 1.44225 1.01827 1.03626 1.83805 1.19538 0.86461 1.15994 1.17640 0.90796 1.26078 1.02914 0.99045 0.96138 1.70045 1.31409 1.28426 1.28494 0.85224 0.78926 0.78103 0.77420 1.19998 1.22235 1.20025 1.21364 0.87050 0.95217 0.95354 1.23288 1.04589 0.78735 0.98942 1.73819 1.03470 1.13082 1.20998 1.45204 1.02225 1.12506 1.50531 0.67748 0.86938 0.85970 0.88548 0.90301 0.91012 0.89340 0.99111 0.93883 0.90115 0.97087 0.91356 0.83674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.51 71.24 0.75 0.35 16 2 C 0.23 4.26 8.25 138.16 1.14 5.40 16 3 N -0.51 -15.78 11.41 -180.95 -2.06 -17.84 16 4 C 0.14 4.83 7.72 137.13 1.06 5.88 16 5 C 0.60 25.13 7.70 86.79 0.67 25.80 16 6 O -0.56 -27.20 16.52 -3.88 -0.06 -27.27 16 7 N -0.58 -23.92 2.95 -821.37 -2.42 -26.34 16 8 C 0.10 4.43 6.58 86.41 0.57 5.00 16 9 C 0.17 8.56 5.46 86.41 0.47 9.03 16 10 N -0.61 -31.26 2.97 -698.20 -2.08 -33.33 16 11 C -0.27 -14.44 9.58 84.03 0.80 -13.63 16 12 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 13 C -0.05 -2.57 5.26 84.86 0.45 -2.12 16 14 N -0.94 -55.39 10.64 21.65 0.23 -55.16 16 15 Si 0.98 44.15 29.55 68.60 2.03 46.18 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 19 C 0.14 5.70 6.67 86.41 0.58 6.28 16 20 C 0.07 2.47 6.47 86.42 0.56 3.03 16 21 N -0.27 -7.30 8.67 -52.44 -0.45 -7.75 16 22 N -0.38 -6.14 6.93 -50.61 -0.35 -6.49 16 23 H 0.47 2.56 8.96 -219.80 -1.97 0.59 16 24 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 25 H 0.12 -0.17 8.14 -2.39 -0.02 -0.19 16 26 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.08 3.50 7.02 -2.38 -0.02 3.48 16 28 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 29 H 0.09 5.02 5.83 -2.39 -0.01 5.01 16 30 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 32 H 0.08 3.08 7.93 -2.39 -0.02 3.06 16 33 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.15 4.55 3.73 -83.47 -0.31 4.24 16 Total: -1.00 -79.21 291.78 0.73 -78.48 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -1.14 Total: 4.50 kcal Atomic # 6 Polarization: 37.98 SS G_CDS: 7.04 Total: 45.02 kcal Atomic # 7 Polarization: -139.78 SS G_CDS: -7.14 Total: -146.91 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.06 Total: -27.27 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -79.21 0.73 -78.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700865821.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.835 kcal (2) G-P(sol) polarization free energy of solvation -79.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds