Wall clock time and date at job start Mon Mar 30 2020 04:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46831 * 2 1 4 4 N 1.46494 * 109.46997 * 179.97438 * 3 2 1 5 5 N 1.28384 * 119.10367 * 270.00011 * 4 3 2 6 6 C 1.31479 * 122.25661 * 179.97438 * 5 4 3 7 7 C 1.47749 * 119.89952 * 179.97438 * 6 5 4 8 8 O 1.21597 * 119.99821 * 165.45994 * 7 6 5 9 9 N 1.34781 * 119.99869 * 345.45965 * 7 6 5 10 10 C 1.46499 * 119.99850 * 187.20289 * 9 7 6 11 11 C 1.36833 * 120.00158 * 7.19902 * 9 7 6 12 12 H 1.08002 * 120.00549 * 316.49768 * 11 9 7 13 13 C 1.39066 * 119.99753 * 136.48992 * 11 9 7 14 14 N 1.31350 * 120.00331 * 351.99172 * 13 11 9 15 15 Si 1.86802 * 119.99892 * 171.98318 * 13 11 9 16 16 H 1.48502 * 109.47350 * 60.00237 * 15 13 11 17 17 H 1.48502 * 109.47124 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.46966 * 300.00422 * 15 13 11 19 19 C 1.41628 * 120.20055 * 0.02562 * 6 5 4 20 20 C 1.36296 * 118.23536 * 359.97438 * 19 6 5 21 21 C 1.34609 * 119.09630 * 89.73439 * 4 3 2 22 22 O 1.21978 * 120.21571 * 0.02562 * 21 4 3 23 23 H 1.08998 * 109.47188 * 299.99672 * 1 2 3 24 24 H 1.09003 * 109.47018 * 59.99937 * 1 2 3 25 25 H 1.09001 * 109.46742 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47091 * 119.99733 * 2 1 3 27 27 H 1.08998 * 109.47188 * 240.00328 * 2 1 3 28 28 H 1.08998 * 109.47622 * 300.00247 * 3 2 1 29 29 H 1.09008 * 109.46941 * 60.00300 * 3 2 1 30 30 H 1.08997 * 109.47246 * 358.52711 * 10 9 7 31 31 H 1.08995 * 109.47239 * 118.53080 * 10 9 7 32 32 H 1.09002 * 109.47041 * 238.53170 * 10 9 7 33 33 H 0.97001 * 119.99978 * 179.97438 * 14 13 11 34 34 H 1.08004 * 120.88357 * 180.02562 * 19 6 5 35 35 H 1.08003 * 121.03146 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 7 4.1289 1.4428 1.1226 6 6 5.4417 1.4423 1.1955 7 6 6.1061 1.4431 2.5152 8 8 7.2898 1.1784 2.6001 9 7 5.4000 1.7374 3.6249 10 6 6.0863 1.8934 4.9098 11 6 4.0422 1.8904 3.5515 12 1 3.6052 2.4519 2.7390 13 6 3.2250 1.3228 4.5230 14 7 3.7371 0.5111 5.4198 15 14 1.3988 1.7147 4.5527 16 1 0.7804 1.2903 3.2710 17 1 0.7551 0.9896 5.6775 18 1 1.2092 3.1765 4.7336 19 6 6.2208 1.4421 0.0128 20 6 5.5729 1.4419 -1.1863 21 6 4.1600 1.4370 -1.1753 22 8 3.5379 1.4324 -2.2245 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 7.1525 1.7105 4.7768 31 1 5.9350 2.9066 5.2818 32 1 5.6818 1.1789 5.6268 33 1 3.1671 0.1155 6.0976 34 1 7.2999 1.4414 0.0598 35 1 6.1223 1.4414 -2.1161 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701270190.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:34 Heat of formation + Delta-G solvation = 7.438897 kcal Electronic energy + Delta-G solvation = -20766.580955 eV Core-core repulsion = 17573.970985 eV Total energy + Delta-G solvation = -3192.609970 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.57945 -38.63780 -37.07258 -35.50597 -34.84514 -32.82980 -31.65726 -30.74409 -27.43252 -26.31655 -25.21296 -23.97236 -23.18019 -21.47786 -19.95557 -18.31015 -17.80018 -16.44477 -16.26583 -15.77787 -15.51461 -14.80041 -14.70993 -14.40378 -13.95369 -13.50284 -13.30690 -13.13470 -12.62721 -12.54300 -12.08914 -12.07614 -11.77141 -11.51037 -11.29724 -11.17919 -11.08444 -10.83616 -10.63468 -10.45872 -10.35416 -9.97196 -9.35414 -9.19973 -8.69471 -8.05201 -7.53816 -6.36876 -4.17515 0.98354 1.78911 2.63945 3.07185 3.13693 3.14936 3.51574 3.99876 4.28375 4.33516 4.65808 4.99595 5.00438 5.10852 5.19222 5.21818 5.30806 5.59627 5.65275 5.73880 5.78954 6.01468 6.08212 6.15785 6.21357 6.30444 6.40218 6.49613 6.67279 6.79441 7.25367 7.53032 7.83577 7.97675 8.31847 8.62545 8.98220 9.29801 9.73843 10.58915 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.014678 B = 0.010551 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.166628 B = 2653.178936 C = 4319.592339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.114 3.886 4 N -0.348 5.348 5 N -0.139 5.139 6 C 0.030 3.970 7 C 0.523 3.477 8 O -0.601 6.601 9 N -0.412 5.412 10 C 0.074 3.926 11 C -0.316 4.316 12 H 0.107 0.893 13 C 0.047 3.953 14 N -0.865 5.865 15 Si 0.917 3.083 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.021 4.021 20 C -0.220 4.220 21 C 0.475 3.525 22 O -0.554 6.554 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.100 0.900 33 H 0.271 0.729 34 H 0.154 0.846 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.754 1.528 -6.035 7.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C -0.006 4.006 4 N -0.168 5.168 5 N 0.033 4.967 6 C -0.140 4.140 7 C 0.310 3.690 8 O -0.486 6.486 9 N -0.128 5.128 10 C -0.068 4.068 11 C -0.446 4.446 12 H 0.124 0.876 13 C -0.159 4.159 14 N -0.502 5.502 15 Si 0.743 3.257 16 H -0.191 1.191 17 H -0.209 1.209 18 H -0.198 1.198 19 C -0.045 4.045 20 C -0.249 4.249 21 C 0.274 3.726 22 O -0.435 6.435 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.172 0.828 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.386 1.298 -5.879 7.449 hybrid contribution -0.317 0.092 -0.418 0.532 sum -4.703 1.391 -6.296 7.981 Atomic orbital electron populations 1.21664 0.94511 1.02167 1.02060 1.21838 0.96729 0.95828 1.03300 1.22011 0.74457 0.99246 1.04885 1.47301 1.09513 1.56634 1.03311 1.72712 1.10997 1.05102 1.07931 1.22049 0.88110 1.07440 0.96352 1.17484 0.86228 0.82290 0.82992 1.90648 1.16147 1.55874 1.85973 1.43277 1.07299 1.56455 1.05794 1.21854 0.96291 1.01240 0.87442 1.19771 0.79962 1.32465 1.12394 0.87557 1.25492 1.00148 0.94295 0.96002 1.69702 1.36635 1.27561 1.16268 0.86165 0.82385 0.78774 0.78371 1.19094 1.20862 1.19757 1.22305 1.02622 0.88697 0.90862 1.22493 0.92936 1.09621 0.99881 1.18152 0.90092 0.79937 0.84370 1.90879 1.69565 1.52948 1.30084 0.92193 0.92480 0.92201 0.90549 0.91489 0.88225 0.88089 0.92528 0.94353 0.88234 0.91812 0.82820 0.82489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.38 16 2 C -0.14 -2.04 6.26 -26.73 -0.17 -2.21 16 3 C 0.11 1.80 5.55 -4.04 -0.02 1.78 16 4 N -0.35 -6.43 3.22 -63.33 -0.20 -6.64 16 5 N -0.14 -2.85 7.02 33.40 0.23 -2.62 16 6 C 0.03 0.62 6.70 -82.84 -0.56 0.06 16 7 C 0.52 12.52 7.57 -12.37 -0.09 12.42 16 8 O -0.60 -15.16 15.83 5.28 0.08 -15.08 16 9 N -0.41 -10.12 2.89 -123.32 -0.36 -10.48 16 10 C 0.07 1.71 10.11 59.85 0.60 2.32 16 11 C -0.32 -7.65 7.67 -15.01 -0.12 -7.77 16 12 H 0.11 2.51 5.86 -52.49 -0.31 2.20 16 13 C 0.05 1.13 5.29 -17.45 -0.09 1.04 16 14 N -0.86 -21.94 11.10 55.50 0.62 -21.33 16 15 Si 0.92 18.49 29.56 -169.99 -5.02 13.47 16 16 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 17 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 19 C -0.02 -0.36 9.67 -38.99 -0.38 -0.73 16 20 C -0.22 -3.59 10.11 -39.12 -0.40 -3.98 16 21 C 0.47 8.80 7.47 -15.17 -0.11 8.68 16 22 O -0.55 -11.10 16.62 4.94 0.08 -11.02 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.10 1.46 7.37 -51.93 -0.38 1.07 16 29 H 0.10 1.56 8.14 -51.92 -0.42 1.13 16 30 H 0.06 1.26 6.92 -51.93 -0.36 0.90 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 2.43 5.78 -51.93 -0.30 2.13 16 33 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 34 H 0.15 2.37 7.79 -52.48 -0.41 1.97 16 35 H 0.16 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 300.93 15.07 4.54 4.54 Total: -1.00 -28.93 300.93 -5.27 -34.20 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.27 Total: 4.72 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -0.96 Total: 10.24 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.29 Total: -41.06 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: 0.17 Total: -26.10 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.93 -5.27 -34.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701270190.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.641 kcal (2) G-P(sol) polarization free energy of solvation -28.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds