Wall clock time and date at job start Mon Mar 30 2020 04:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46831 * 2 1 4 4 N 1.46494 * 109.46997 * 179.97438 * 3 2 1 5 5 N 1.28384 * 119.10367 * 270.00011 * 4 3 2 6 6 C 1.31479 * 122.25661 * 179.97438 * 5 4 3 7 7 C 1.47749 * 119.89952 * 179.97438 * 6 5 4 8 8 O 1.21597 * 119.99821 * 165.45994 * 7 6 5 9 9 N 1.34781 * 119.99869 * 345.45965 * 7 6 5 10 10 C 1.46499 * 119.99850 * 187.20289 * 9 7 6 11 11 C 1.36833 * 120.00158 * 7.19902 * 9 7 6 12 12 H 1.08002 * 120.00549 * 316.49768 * 11 9 7 13 13 C 1.39066 * 119.99753 * 136.48992 * 11 9 7 14 14 N 1.31350 * 120.00331 * 351.99172 * 13 11 9 15 15 Si 1.86802 * 119.99892 * 171.98318 * 13 11 9 16 16 H 1.48502 * 109.47350 * 60.00237 * 15 13 11 17 17 H 1.48502 * 109.47124 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.46966 * 300.00422 * 15 13 11 19 19 C 1.41628 * 120.20055 * 0.02562 * 6 5 4 20 20 C 1.36296 * 118.23536 * 359.97438 * 19 6 5 21 21 C 1.34609 * 119.09630 * 89.73439 * 4 3 2 22 22 O 1.21978 * 120.21571 * 0.02562 * 21 4 3 23 23 H 1.08998 * 109.47188 * 299.99672 * 1 2 3 24 24 H 1.09003 * 109.47018 * 59.99937 * 1 2 3 25 25 H 1.09001 * 109.46742 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47091 * 119.99733 * 2 1 3 27 27 H 1.08998 * 109.47188 * 240.00328 * 2 1 3 28 28 H 1.08998 * 109.47622 * 300.00247 * 3 2 1 29 29 H 1.09008 * 109.46941 * 60.00300 * 3 2 1 30 30 H 1.08997 * 109.47246 * 358.52711 * 10 9 7 31 31 H 1.08995 * 109.47239 * 118.53080 * 10 9 7 32 32 H 1.09002 * 109.47041 * 238.53170 * 10 9 7 33 33 H 0.97001 * 119.99978 * 179.97438 * 14 13 11 34 34 H 1.08004 * 120.88357 * 180.02562 * 19 6 5 35 35 H 1.08003 * 121.03146 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 7 4.1289 1.4428 1.1226 6 6 5.4417 1.4423 1.1955 7 6 6.1061 1.4431 2.5152 8 8 7.2898 1.1784 2.6001 9 7 5.4000 1.7374 3.6249 10 6 6.0863 1.8934 4.9098 11 6 4.0422 1.8904 3.5515 12 1 3.6052 2.4519 2.7390 13 6 3.2250 1.3228 4.5230 14 7 3.7371 0.5111 5.4198 15 14 1.3988 1.7147 4.5527 16 1 0.7804 1.2903 3.2710 17 1 0.7551 0.9896 5.6775 18 1 1.2092 3.1765 4.7336 19 6 6.2208 1.4421 0.0128 20 6 5.5729 1.4419 -1.1863 21 6 4.1600 1.4370 -1.1753 22 8 3.5379 1.4324 -2.2245 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 7.1525 1.7105 4.7768 31 1 5.9350 2.9066 5.2818 32 1 5.6818 1.1789 5.6268 33 1 3.1671 0.1155 6.0976 34 1 7.2999 1.4414 0.0598 35 1 6.1223 1.4414 -2.1161 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701270190.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:34 Heat of formation + Delta-G solvation = -9.867959 kcal Electronic energy + Delta-G solvation = -20767.331437 eV Core-core repulsion = 17573.970985 eV Total energy + Delta-G solvation = -3193.360451 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.06910 -40.43065 -38.63792 -36.95323 -36.57194 -34.11536 -33.49111 -32.26914 -28.88087 -27.97768 -26.90509 -25.52241 -24.60440 -22.70342 -21.69567 -20.03918 -19.28737 -18.02856 -17.80520 -17.27851 -17.09209 -16.38629 -16.27409 -15.96270 -15.68788 -15.02171 -14.62474 -14.49183 -14.24488 -14.06592 -13.61571 -13.21176 -13.20933 -13.06811 -12.95601 -12.76609 -12.56175 -12.37916 -12.11899 -12.03265 -11.75725 -11.34061 -11.11373 -10.88673 -10.41918 -9.56796 -9.39347 -8.19052 -6.06893 -0.42715 0.21996 1.22715 1.47762 1.50810 1.58343 1.92549 2.32473 2.61473 2.71474 3.06999 3.27637 3.75811 3.82874 3.84715 3.94624 4.10114 4.18372 4.45621 4.51122 4.65080 4.71364 4.80422 4.83256 4.92083 4.98747 5.04030 5.07669 5.15092 5.32034 5.37848 5.66437 5.99638 6.44294 6.52516 7.02981 7.19516 7.45880 7.88450 8.77649 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.014678 B = 0.010551 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.166628 B = 2653.178936 C = 4319.592339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.133 4.133 3 C 0.106 3.894 4 N -0.345 5.345 5 N -0.150 5.150 6 C 0.015 3.985 7 C 0.515 3.485 8 O -0.621 6.621 9 N -0.429 5.429 10 C 0.079 3.921 11 C -0.327 4.327 12 H 0.112 0.888 13 C 0.006 3.994 14 N -0.899 5.899 15 Si 0.972 3.028 16 H -0.247 1.247 17 H -0.287 1.287 18 H -0.266 1.266 19 C -0.022 4.022 20 C -0.199 4.199 21 C 0.466 3.534 22 O -0.568 6.568 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.271 0.729 34 H 0.173 0.827 35 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.934 1.969 -7.651 9.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C -0.013 4.013 4 N -0.165 5.165 5 N 0.021 4.979 6 C -0.154 4.154 7 C 0.303 3.697 8 O -0.508 6.508 9 N -0.145 5.145 10 C -0.063 4.063 11 C -0.456 4.456 12 H 0.129 0.871 13 C -0.196 4.196 14 N -0.537 5.537 15 Si 0.795 3.205 16 H -0.171 1.171 17 H -0.213 1.213 18 H -0.191 1.191 19 C -0.046 4.046 20 C -0.228 4.228 21 C 0.267 3.733 22 O -0.451 6.451 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.132 0.868 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.191 0.809 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.570 1.748 -7.496 9.501 hybrid contribution 0.076 -0.052 0.010 0.093 sum -5.493 1.697 -7.486 9.439 Atomic orbital electron populations 1.21656 0.92072 1.03256 1.02930 1.21796 0.98798 0.94718 1.01895 1.22305 0.73092 1.00181 1.05768 1.47480 1.10452 1.55730 1.02883 1.72563 1.11204 1.05091 1.09087 1.21828 0.88750 1.08694 0.96113 1.17914 0.86163 0.81586 0.84028 1.90613 1.16944 1.56572 1.86656 1.43530 1.07789 1.56900 1.06285 1.21766 0.96032 1.01482 0.87058 1.19986 0.79954 1.32905 1.12782 0.87090 1.26280 1.04057 0.93863 0.95436 1.69828 1.37998 1.28817 1.17072 0.85304 0.77529 0.78718 0.78925 1.17110 1.21296 1.19088 1.22352 1.03312 0.89168 0.89783 1.22805 0.91902 1.07244 1.00828 1.18516 0.90994 0.79754 0.84042 1.90877 1.70059 1.53731 1.30389 0.92051 0.90857 0.91075 0.92698 0.92087 0.86777 0.87696 0.92534 0.93138 0.89795 0.91922 0.80940 0.78974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.91 71.98 0.71 -2.28 16 2 C -0.13 -3.72 6.26 30.60 0.19 -3.53 16 3 C 0.11 3.14 5.55 86.38 0.48 3.62 16 4 N -0.35 -12.23 3.22 -472.46 -1.52 -13.75 16 5 N -0.15 -6.04 7.02 -48.23 -0.34 -6.38 16 6 C 0.02 0.62 6.70 42.55 0.29 0.90 16 7 C 0.52 24.75 7.57 86.76 0.66 25.41 16 8 O -0.62 -31.47 15.83 -4.02 -0.06 -31.53 16 9 N -0.43 -21.28 2.89 -662.32 -1.92 -23.20 16 10 C 0.08 3.73 10.11 127.77 1.29 5.02 16 11 C -0.33 -15.85 7.67 84.11 0.65 -15.21 16 12 H 0.11 5.18 5.86 -2.91 -0.02 5.16 16 13 C 0.01 0.31 5.29 84.96 0.45 0.76 16 14 N -0.90 -46.30 11.10 21.68 0.24 -46.06 16 15 Si 0.97 37.14 29.56 68.60 2.03 39.17 16 16 H -0.25 -8.59 7.11 99.48 0.71 -7.89 16 17 H -0.29 -11.10 7.11 99.48 0.71 -10.39 16 18 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 19 C -0.02 -0.73 9.67 22.65 0.22 -0.51 16 20 C -0.20 -5.91 10.11 22.57 0.23 -5.68 16 21 C 0.47 16.23 7.47 85.02 0.63 16.86 16 22 O -0.57 -21.38 16.62 -5.25 -0.09 -21.47 16 23 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 27 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 28 H 0.11 3.06 7.37 -2.39 -0.02 3.04 16 29 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 30 H 0.06 2.58 6.92 -2.39 -0.02 2.56 16 31 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.08 4.22 5.78 -2.39 -0.01 4.21 16 33 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 34 H 0.17 4.96 7.79 -2.91 -0.02 4.93 16 35 H 0.19 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -61.30 300.93 5.24 -56.06 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 1.10 Total: 21.81 kcal Atomic # 6 Polarization: 19.56 SS G_CDS: 5.79 Total: 25.35 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -3.53 Total: -89.39 kcal Atomic # 8 Polarization: -52.85 SS G_CDS: -0.15 Total: -53.00 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Total: -61.30 5.24 -56.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701270190.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.189 kcal (2) G-P(sol) polarization free energy of solvation -61.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds