Wall clock time and date at job start Mon Mar 30 2020 04:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47102 * 2 1 4 4 N 1.46503 * 109.46913 * 120.00139 * 2 1 3 5 5 C 1.36838 * 119.99529 * 245.60941 * 4 2 1 6 6 H 1.08003 * 120.00178 * 42.83742 * 5 4 2 7 7 C 1.39066 * 119.99884 * 222.82692 * 5 4 2 8 8 N 1.31348 * 119.99581 * 15.57838 * 7 5 4 9 9 Si 1.86800 * 119.99908 * 195.56916 * 7 5 4 10 10 H 1.48498 * 109.47266 * 90.00608 * 9 7 5 11 11 H 1.48507 * 109.46672 * 210.00543 * 9 7 5 12 12 H 1.48499 * 109.47127 * 330.00063 * 9 7 5 13 13 C 1.34777 * 120.00216 * 65.61210 * 4 2 1 14 14 O 1.21589 * 119.99689 * 184.99633 * 13 4 2 15 15 C 1.47750 * 119.99792 * 4.98834 * 13 4 2 16 16 C 1.41627 * 119.89506 * 185.16304 * 15 13 4 17 17 C 1.36301 * 118.23141 * 180.02562 * 16 15 13 18 18 C 1.41291 * 117.94385 * 0.24661 * 17 16 15 19 19 O 1.21980 * 120.21744 * 179.72866 * 18 17 16 20 20 N 1.34610 * 119.56383 * 359.51803 * 18 17 16 21 21 C 1.46494 * 119.10034 * 180.20990 * 20 18 17 22 22 N 1.28393 * 121.79861 * 0.50281 * 20 18 17 23 23 H 1.08993 * 109.47407 * 302.48371 * 1 2 3 24 24 H 1.09005 * 109.47187 * 62.48446 * 1 2 3 25 25 H 1.08999 * 109.46954 * 182.48120 * 1 2 3 26 26 H 1.09000 * 109.46925 * 239.99912 * 2 1 3 27 27 H 1.08996 * 109.47031 * 182.13072 * 3 2 1 28 28 H 1.08995 * 109.47142 * 302.13213 * 3 2 1 29 29 H 1.09003 * 109.47061 * 62.13483 * 3 2 1 30 30 H 0.97006 * 119.99685 * 179.97438 * 8 7 5 31 31 H 1.08004 * 120.88811 * 0.02562 * 16 15 13 32 32 H 1.08001 * 121.02675 * 179.97438 * 17 16 15 33 33 H 1.08995 * 109.47233 * 180.28277 * 21 20 18 34 34 H 1.09006 * 109.46927 * 300.28886 * 21 20 18 35 35 H 1.09005 * 109.47072 * 60.28250 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.7077 0.0031 2.1532 6 1 2.3693 0.9819 2.4596 7 6 3.8441 -0.5522 2.7313 8 7 4.4330 -1.5808 2.1653 9 14 4.5330 0.1649 4.3126 10 1 3.9112 -0.5155 5.4769 11 1 6.0038 -0.0376 4.3484 12 1 4.2319 1.6180 4.3696 13 6 1.7885 -2.0093 1.3540 14 8 2.1132 -2.5636 2.3864 15 6 1.1421 -2.7811 0.2726 16 6 0.8022 -4.1401 0.4813 17 6 0.2076 -4.8200 -0.5394 18 6 -0.0289 -4.1267 -1.7476 19 8 -0.5541 -4.6965 -2.6897 20 7 0.3254 -2.8322 -1.8508 21 6 0.0713 -2.1219 -3.1066 22 7 0.8850 -2.2045 -0.8806 23 1 -0.3634 0.5519 0.8668 24 1 -0.3634 0.4748 -0.9115 25 1 -0.3633 -1.0267 0.0445 26 1 1.8933 -0.5139 -0.8900 27 1 3.1293 1.4427 -0.0382 28 1 1.6458 1.9672 -0.8702 29 1 1.7083 1.9452 0.9085 30 1 5.2259 -1.9680 2.5684 31 1 1.0087 -4.6248 1.4241 32 1 -0.0702 -5.8579 -0.4296 33 1 0.4216 -1.0935 -3.0196 34 1 0.6017 -2.6190 -3.9189 35 1 -0.9985 -2.1250 -3.3157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701277032.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:08 Heat of formation + Delta-G solvation = 33.599627 kcal Electronic energy + Delta-G solvation = -21133.926878 eV Core-core repulsion = 17942.451322 eV Total energy + Delta-G solvation = -3191.475555 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.69353 -38.75182 -37.14868 -35.48430 -34.32673 -32.54268 -31.11410 -29.94835 -28.14010 -26.70481 -25.26322 -24.22124 -23.15290 -21.08919 -19.91894 -18.17477 -17.35969 -16.49269 -16.38792 -15.96236 -15.51752 -14.77423 -14.31020 -13.92184 -13.66229 -13.43667 -13.15266 -13.07011 -12.74862 -12.40373 -12.11169 -11.96279 -11.67795 -11.60732 -11.20844 -10.99606 -10.87188 -10.54422 -10.44144 -10.34256 -10.05841 -9.98226 -9.28048 -8.86077 -8.37754 -8.09023 -7.20132 -6.24645 -3.95267 0.85706 1.74171 2.54298 3.25878 3.32531 3.35368 3.54839 4.12839 4.36549 4.64172 4.69653 5.11455 5.17288 5.23733 5.29882 5.36980 5.49208 5.59116 5.73225 5.90106 5.92766 6.05647 6.12551 6.21558 6.29455 6.38099 6.45146 6.58105 6.63536 7.03520 7.06230 7.51126 7.87024 8.13264 8.43781 8.90353 9.04456 9.49668 10.14781 10.83047 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.028073 B = 0.007143 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.143751 B = 3918.947525 C = 4613.342835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.128 3.872 3 C -0.136 4.136 4 N -0.418 5.418 5 C -0.331 4.331 6 H 0.088 0.912 7 C 0.065 3.935 8 N -0.822 5.822 9 Si 0.915 3.085 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.523 3.477 14 O -0.533 6.533 15 C 0.044 3.956 16 C -0.020 4.020 17 C -0.215 4.215 18 C 0.477 3.523 19 O -0.553 6.553 20 N -0.352 5.352 21 C 0.088 3.912 22 N -0.195 5.195 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.268 0.732 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.020 1.656 -6.500 9.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.024 3.976 3 C -0.194 4.194 4 N -0.139 5.139 5 C -0.459 4.459 6 H 0.105 0.895 7 C -0.147 4.147 8 N -0.456 5.456 9 Si 0.742 3.258 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.309 3.691 14 O -0.410 6.410 15 C -0.126 4.126 16 C -0.044 4.044 17 C -0.245 4.245 18 C 0.276 3.724 19 O -0.434 6.434 20 N -0.172 5.172 21 C -0.053 4.053 22 N -0.025 5.025 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.175 0.825 32 H 0.176 0.824 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.937 1.723 -7.008 9.345 hybrid contribution 0.325 -0.633 0.926 1.168 sum -5.612 1.090 -6.082 8.347 Atomic orbital electron populations 1.22253 0.97185 1.01101 1.00460 1.21303 0.92663 0.93472 0.90210 1.21844 1.01964 0.95256 1.00324 1.43275 1.47193 1.06356 1.17104 1.19098 1.06474 1.02948 1.17366 0.89490 1.25315 0.95136 0.95818 0.98420 1.69819 1.17505 1.21312 1.36958 0.86147 0.77632 0.78986 0.83014 1.20179 1.21188 1.19656 1.16820 0.83696 0.83366 0.85213 1.90631 1.53827 1.68818 1.27768 1.22773 1.02865 0.94338 0.92638 1.22340 0.89072 0.92925 1.00040 1.22551 1.06539 1.02517 0.92845 1.18032 0.81709 0.82113 0.90528 1.90897 1.45611 1.66373 1.40560 1.46807 1.47291 1.10174 1.12914 1.22042 1.02950 0.98225 0.82076 1.72149 1.06672 1.26663 0.97022 0.93238 0.93171 0.92923 0.90284 0.91859 0.93850 0.92349 0.92205 0.82519 0.82366 0.88297 0.90079 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.44 37.16 0.31 -2.20 16 2 C 0.13 2.45 2.85 -67.93 -0.19 2.25 16 3 C -0.14 -2.35 8.20 37.16 0.30 -2.04 16 4 N -0.42 -10.00 2.64 -108.83 -0.29 -10.29 16 5 C -0.33 -8.47 7.82 -15.01 -0.12 -8.59 16 6 H 0.09 2.12 6.64 -52.48 -0.35 1.77 16 7 C 0.06 1.71 4.47 -17.45 -0.08 1.64 16 8 N -0.82 -23.16 11.56 55.50 0.64 -22.52 16 9 Si 0.92 20.67 29.58 -169.99 -5.03 15.64 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 13 C 0.52 12.91 6.53 -12.37 -0.08 12.83 16 14 O -0.53 -14.95 14.20 5.29 0.08 -14.87 16 15 C 0.04 0.89 5.83 -82.84 -0.48 0.40 16 16 C -0.02 -0.35 9.67 -38.99 -0.38 -0.72 16 17 C -0.22 -3.47 10.11 -39.12 -0.40 -3.87 16 18 C 0.48 8.37 7.47 -15.17 -0.11 8.25 16 19 O -0.55 -10.69 17.07 4.94 0.08 -10.61 16 20 N -0.35 -5.74 3.62 -70.15 -0.25 -6.00 16 21 C 0.09 1.05 10.20 59.84 0.61 1.66 16 22 N -0.20 -3.53 4.63 33.40 0.15 -3.37 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.93 5.12 -51.93 -0.27 0.66 16 26 H 0.08 1.52 6.14 -51.93 -0.32 1.20 16 27 H 0.06 1.18 7.97 -51.93 -0.41 0.77 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 1.02 6.88 -51.93 -0.36 0.67 16 30 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.16 2.64 7.73 -52.48 -0.41 2.23 16 32 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.10 1.00 8.05 -51.93 -0.42 0.59 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 291.84 15.07 4.40 4.40 Total: -1.00 -32.13 291.84 -5.03 -37.16 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -4.20 Total: 0.84 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -0.61 Total: 9.62 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.25 Total: -42.17 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: 0.16 Total: -25.48 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.13 -5.03 -37.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701277032.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.757 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds