Wall clock time and date at job start Mon Mar 30 2020 04:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47102 * 2 1 4 4 N 1.46503 * 109.46913 * 120.00139 * 2 1 3 5 5 C 1.36838 * 119.99529 * 245.60941 * 4 2 1 6 6 H 1.08003 * 120.00178 * 42.83742 * 5 4 2 7 7 C 1.39066 * 119.99884 * 222.82692 * 5 4 2 8 8 N 1.31348 * 119.99581 * 15.57838 * 7 5 4 9 9 Si 1.86800 * 119.99908 * 195.56916 * 7 5 4 10 10 H 1.48498 * 109.47266 * 90.00608 * 9 7 5 11 11 H 1.48507 * 109.46672 * 210.00543 * 9 7 5 12 12 H 1.48499 * 109.47127 * 330.00063 * 9 7 5 13 13 C 1.34777 * 120.00216 * 65.61210 * 4 2 1 14 14 O 1.21589 * 119.99689 * 184.99633 * 13 4 2 15 15 C 1.47750 * 119.99792 * 4.98834 * 13 4 2 16 16 C 1.41627 * 119.89506 * 185.16304 * 15 13 4 17 17 C 1.36301 * 118.23141 * 180.02562 * 16 15 13 18 18 C 1.41291 * 117.94385 * 0.24661 * 17 16 15 19 19 O 1.21980 * 120.21744 * 179.72866 * 18 17 16 20 20 N 1.34610 * 119.56383 * 359.51803 * 18 17 16 21 21 C 1.46494 * 119.10034 * 180.20990 * 20 18 17 22 22 N 1.28393 * 121.79861 * 0.50281 * 20 18 17 23 23 H 1.08993 * 109.47407 * 302.48371 * 1 2 3 24 24 H 1.09005 * 109.47187 * 62.48446 * 1 2 3 25 25 H 1.08999 * 109.46954 * 182.48120 * 1 2 3 26 26 H 1.09000 * 109.46925 * 239.99912 * 2 1 3 27 27 H 1.08996 * 109.47031 * 182.13072 * 3 2 1 28 28 H 1.08995 * 109.47142 * 302.13213 * 3 2 1 29 29 H 1.09003 * 109.47061 * 62.13483 * 3 2 1 30 30 H 0.97006 * 119.99685 * 179.97438 * 8 7 5 31 31 H 1.08004 * 120.88811 * 0.02562 * 16 15 13 32 32 H 1.08001 * 121.02675 * 179.97438 * 17 16 15 33 33 H 1.08995 * 109.47233 * 180.28277 * 21 20 18 34 34 H 1.09006 * 109.46927 * 300.28886 * 21 20 18 35 35 H 1.09005 * 109.47072 * 60.28250 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.7077 0.0031 2.1532 6 1 2.3693 0.9819 2.4596 7 6 3.8441 -0.5522 2.7313 8 7 4.4330 -1.5808 2.1653 9 14 4.5330 0.1649 4.3126 10 1 3.9112 -0.5155 5.4769 11 1 6.0038 -0.0376 4.3484 12 1 4.2319 1.6180 4.3696 13 6 1.7885 -2.0093 1.3540 14 8 2.1132 -2.5636 2.3864 15 6 1.1421 -2.7811 0.2726 16 6 0.8022 -4.1401 0.4813 17 6 0.2076 -4.8200 -0.5394 18 6 -0.0289 -4.1267 -1.7476 19 8 -0.5541 -4.6965 -2.6897 20 7 0.3254 -2.8322 -1.8508 21 6 0.0713 -2.1219 -3.1066 22 7 0.8850 -2.2045 -0.8806 23 1 -0.3634 0.5519 0.8668 24 1 -0.3634 0.4748 -0.9115 25 1 -0.3633 -1.0267 0.0445 26 1 1.8933 -0.5139 -0.8900 27 1 3.1293 1.4427 -0.0382 28 1 1.6458 1.9672 -0.8702 29 1 1.7083 1.9452 0.9085 30 1 5.2259 -1.9680 2.5684 31 1 1.0087 -4.6248 1.4241 32 1 -0.0702 -5.8579 -0.4296 33 1 0.4216 -1.0935 -3.0196 34 1 0.6017 -2.6190 -3.9189 35 1 -0.9985 -2.1250 -3.3157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701277032.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:06 Heat of formation + Delta-G solvation = 12.214447 kcal Electronic energy + Delta-G solvation = -21134.854209 eV Core-core repulsion = 17942.451322 eV Total energy + Delta-G solvation = -3192.402886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.11715 -40.45858 -38.66474 -37.17336 -35.76249 -34.39035 -32.54516 -31.67177 -29.42492 -28.12524 -26.88816 -25.78323 -24.53671 -22.71344 -21.57514 -19.74349 -18.81907 -17.92799 -17.84560 -17.61461 -17.06987 -16.49363 -15.93081 -15.65213 -15.20707 -15.01947 -14.53049 -14.29503 -14.17988 -13.73775 -13.46241 -13.41949 -13.31776 -13.01807 -12.86720 -12.62621 -12.51938 -12.23402 -12.07024 -11.86761 -11.56887 -11.35320 -10.87815 -10.66564 -10.27966 -9.49935 -9.08588 -8.20539 -5.94980 -0.52040 0.22216 1.24787 1.44208 1.51295 1.56371 2.07562 2.35244 2.76189 2.91516 3.15735 3.34481 3.74297 3.79379 3.98269 4.30744 4.38222 4.39638 4.48132 4.62335 4.66180 4.71386 4.76239 4.92180 4.93964 5.01867 5.07720 5.16272 5.24149 5.50084 5.62467 5.65943 6.21116 6.47154 6.96337 7.00235 7.19943 7.63299 8.28408 8.87702 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.028073 B = 0.007143 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.143751 B = 3918.947525 C = 4613.342835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.121 3.879 3 C -0.129 4.129 4 N -0.435 5.435 5 C -0.343 4.343 6 H 0.094 0.906 7 C 0.016 3.984 8 N -0.866 5.866 9 Si 0.972 3.028 10 H -0.289 1.289 11 H -0.284 1.284 12 H -0.250 1.250 13 C 0.516 3.484 14 O -0.580 6.580 15 C 0.019 3.981 16 C -0.029 4.029 17 C -0.197 4.197 18 C 0.469 3.531 19 O -0.568 6.568 20 N -0.344 5.344 21 C 0.075 3.925 22 N -0.172 5.172 23 H 0.043 0.957 24 H 0.088 0.912 25 H 0.040 0.960 26 H 0.079 0.921 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.262 0.738 31 H 0.159 0.841 32 H 0.188 0.812 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.392 2.557 -8.171 11.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.018 3.982 3 C -0.187 4.187 4 N -0.155 5.155 5 C -0.471 4.471 6 H 0.111 0.889 7 C -0.191 4.191 8 N -0.501 5.501 9 Si 0.797 3.203 10 H -0.216 1.216 11 H -0.210 1.210 12 H -0.174 1.174 13 C 0.303 3.697 14 O -0.460 6.460 15 C -0.150 4.150 16 C -0.053 4.053 17 C -0.226 4.226 18 C 0.270 3.730 19 O -0.451 6.451 20 N -0.164 5.164 21 C -0.064 4.064 22 N -0.003 5.003 23 H 0.062 0.938 24 H 0.107 0.893 25 H 0.059 0.941 26 H 0.097 0.903 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.176 0.824 32 H 0.205 0.795 33 H 0.139 0.861 34 H 0.111 0.889 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.317 2.685 -8.702 11.682 hybrid contribution 0.605 -0.917 1.247 1.661 sum -6.712 1.768 -7.456 10.186 Atomic orbital electron populations 1.22156 0.94948 1.00667 1.02190 1.21550 0.94352 0.94033 0.88259 1.21787 1.00626 0.94343 1.01900 1.43571 1.47089 1.06527 1.18324 1.19372 1.06335 1.03239 1.18135 0.88863 1.26124 0.95767 0.96202 1.01023 1.69931 1.18261 1.23448 1.38468 0.85265 0.76786 0.79279 0.78935 1.21579 1.21014 1.17393 1.17363 0.82896 0.83768 0.85678 1.90578 1.55579 1.69960 1.29918 1.22206 1.04784 0.95195 0.92772 1.22275 0.90138 0.92025 1.00858 1.22814 1.04725 1.03563 0.91547 1.18253 0.81616 0.82517 0.90664 1.90899 1.46348 1.66733 1.41080 1.47173 1.45534 1.10320 1.13397 1.22486 1.04516 0.99194 0.80209 1.72085 1.05262 1.26367 0.96627 0.93789 0.89316 0.94140 0.90297 0.94014 0.89752 0.93011 0.92908 0.82365 0.79481 0.86090 0.88949 0.88223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 8.44 71.98 0.61 -3.72 16 2 C 0.12 4.47 2.85 44.99 0.13 4.60 16 3 C -0.13 -4.20 8.20 71.98 0.59 -3.61 16 4 N -0.43 -20.95 2.64 -616.48 -1.63 -22.58 16 5 C -0.34 -17.80 7.82 84.11 0.66 -17.15 16 6 H 0.09 4.57 6.64 -2.91 -0.02 4.55 16 7 C 0.02 0.84 4.47 84.96 0.38 1.22 16 8 N -0.87 -50.57 11.56 21.68 0.25 -50.32 16 9 Si 0.97 43.33 29.58 68.60 2.03 45.36 16 10 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16 13 C 0.52 26.00 6.53 86.76 0.57 26.57 16 14 O -0.58 -33.79 14.20 -4.00 -0.06 -33.85 16 15 C 0.02 0.77 5.83 42.55 0.25 1.02 16 16 C -0.03 -1.02 9.67 22.65 0.22 -0.80 16 17 C -0.20 -5.97 10.11 22.57 0.23 -5.74 16 18 C 0.47 15.28 7.47 85.02 0.64 15.91 16 19 O -0.57 -20.36 17.07 -5.25 -0.09 -20.45 16 20 N -0.34 -10.27 3.62 -494.04 -1.79 -12.06 16 21 C 0.07 1.51 10.20 127.77 1.30 2.81 16 22 N -0.17 -5.91 4.63 -48.23 -0.22 -6.14 16 23 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 25 H 0.04 1.34 5.12 -2.39 -0.01 1.32 16 26 H 0.08 2.90 6.14 -2.39 -0.01 2.88 16 27 H 0.04 1.52 7.97 -2.39 -0.02 1.50 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 1.73 6.88 -2.39 -0.02 1.72 16 30 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 31 H 0.16 5.42 7.73 -2.91 -0.02 5.40 16 32 H 0.19 4.48 8.06 -2.91 -0.02 4.46 16 33 H 0.12 1.92 8.05 -2.39 -0.02 1.90 16 34 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -71.35 291.84 5.17 -66.19 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 1.11 Total: 12.71 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: 5.57 Total: 21.13 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -3.39 Total: -91.09 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -0.15 Total: -54.29 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -71.35 5.17 -66.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701277032.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.402 kcal (2) G-P(sol) polarization free energy of solvation -71.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds