Wall clock time and date at job start Mon Mar 30 2020 04:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47241 * 232.71516 * 3 2 1 5 5 C 1.37098 * 120.00266 * 263.93198 * 4 3 2 6 6 H 1.08000 * 120.00316 * 199.74861 * 5 4 3 7 7 C 1.38956 * 120.00018 * 19.75027 * 5 4 3 8 8 N 1.31407 * 119.99626 * 21.74324 * 7 5 4 9 9 Si 1.86802 * 119.99939 * 201.74925 * 7 5 4 10 10 H 1.48505 * 109.46918 * 90.00098 * 9 7 5 11 11 H 1.48501 * 109.46630 * 209.99784 * 9 7 5 12 12 H 1.48495 * 109.47177 * 329.99911 * 9 7 5 13 13 C 1.34775 * 119.99904 * 83.92558 * 4 3 2 14 14 O 1.21298 * 120.00274 * 180.02562 * 13 4 3 15 15 C 1.50700 * 119.99974 * 0.02562 * 13 4 3 16 16 N 1.46506 * 109.47162 * 179.97438 * 15 13 4 17 17 C 1.46013 * 118.53737 * 89.99535 * 16 15 13 18 18 C 1.52983 * 110.04145 * 161.81456 * 17 16 15 19 19 N 1.47191 * 108.72432 * 50.29587 * 18 17 16 20 20 C 1.46896 * 110.17875 * 290.99958 * 19 18 17 21 21 C 1.33710 * 118.53556 * 269.73225 * 16 15 13 22 22 O 1.21283 * 118.62698 * 1.70509 * 21 16 15 23 23 H 4.40639 * 5.51331 * 179.97438 * 4 1 2 24 24 H 1.09005 * 109.47032 * 112.71809 * 3 2 1 25 25 H 1.08999 * 109.47653 * 352.71874 * 3 2 1 26 26 H 0.96997 * 119.99860 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.47200 * 299.99415 * 15 13 4 28 28 H 1.08997 * 109.47580 * 59.99919 * 15 13 4 29 29 H 1.08995 * 109.37546 * 281.99780 * 17 16 15 30 30 H 1.09005 * 109.36983 * 41.64401 * 17 16 15 31 31 H 1.08994 * 109.59018 * 170.06390 * 18 17 16 32 32 H 1.08994 * 109.59594 * 290.37517 * 18 17 16 33 33 H 1.00909 * 110.99585 * 167.62909 * 19 18 17 34 34 H 1.08996 * 109.39220 * 170.46201 * 20 19 18 35 35 H 1.09005 * 109.38217 * 290.25014 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 0.8376 1.0989 5 6 3.4802 2.1433 0.8647 6 1 4.1231 2.6643 1.5586 7 6 3.0039 2.7963 -0.2656 8 7 1.9232 2.3579 -0.8712 9 14 3.9000 4.2972 -0.9242 10 1 4.9261 3.8687 -1.9085 11 1 2.9273 5.2035 -1.5859 12 1 4.5587 5.0125 0.1981 13 6 3.2423 0.3240 2.3403 14 8 3.6459 1.0170 3.2503 15 6 2.8621 -1.1114 2.5977 16 7 3.0690 -1.4249 4.0138 17 6 1.9647 -1.2095 4.9444 18 6 2.2068 -1.9936 6.2356 19 7 3.5649 -1.6982 6.7202 20 6 4.5639 -2.2832 5.8160 21 6 4.2589 -1.9007 4.3954 22 8 5.1301 -2.0245 3.5608 23 1 -1.0501 0.0000 -0.0004 24 1 3.0091 0.3977 -0.9480 25 1 3.0098 -1.0185 0.1302 26 1 1.5909 2.8136 -1.6604 27 1 1.8133 -1.2609 2.3416 28 1 3.4824 -1.7669 1.9864 29 1 1.8884 -0.1471 5.1753 30 1 1.0347 -1.5459 4.4860 31 1 1.4771 -1.6935 6.9876 32 1 2.1108 -3.0612 6.0384 33 1 3.6924 -2.0314 7.6641 34 1 5.5547 -1.9185 6.0867 35 1 4.5412 -3.3693 5.9059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705915054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:34 Heat of formation + Delta-G solvation = 20.893277 kcal Electronic energy + Delta-G solvation = -20509.796319 eV Core-core repulsion = 17317.769775 eV Total energy + Delta-G solvation = -3192.026544 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.25103 -38.31504 -36.55062 -35.23627 -34.21276 -32.10544 -31.20123 -29.79587 -28.21430 -26.38764 -25.29440 -24.05318 -22.90484 -19.58123 -18.15587 -17.81588 -16.94487 -16.73385 -16.67017 -16.28804 -15.29961 -14.83456 -14.62507 -14.51158 -14.13432 -13.91233 -13.37557 -13.06269 -12.73998 -12.40252 -12.20685 -11.98366 -11.72232 -11.61326 -11.55112 -11.09030 -10.98404 -10.44535 -10.28881 -9.61353 -9.40376 -9.22961 -8.94122 -8.86921 -8.71419 -7.99340 -7.80878 -6.29158 -3.82401 2.87019 3.18901 3.22970 3.28951 3.35002 3.71197 3.92906 3.97342 4.02930 4.22394 4.62900 4.79912 5.01069 5.03561 5.08306 5.19741 5.29849 5.43973 5.52233 5.57863 5.74744 5.86946 5.92497 6.09180 6.29859 6.49447 6.67521 6.73717 7.00485 7.06922 7.60636 7.74164 8.09354 8.43053 8.50303 8.78815 9.18543 9.39207 9.95242 10.71621 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.026700 B = 0.005843 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.419545 B = 4790.699847 C = 5247.887304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.114 4.114 3 C 0.230 3.770 4 N -0.441 5.441 5 C -0.312 4.312 6 H 0.102 0.898 7 C 0.032 3.968 8 N -0.863 5.863 9 Si 0.920 3.080 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.442 3.558 14 O -0.569 6.569 15 C 0.096 3.904 16 N -0.576 5.576 17 C 0.117 3.883 18 C 0.041 3.959 19 N -0.679 5.679 20 C 0.048 3.952 21 C 0.522 3.478 22 O -0.551 6.551 23 H 0.199 0.801 24 H 0.108 0.892 25 H 0.063 0.937 26 H 0.267 0.733 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.041 0.959 33 H 0.349 0.651 34 H 0.112 0.888 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 -11.089 8.562 14.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.115 4.115 3 C 0.107 3.893 4 N -0.161 5.161 5 C -0.440 4.440 6 H 0.120 0.880 7 C -0.173 4.173 8 N -0.501 5.501 9 Si 0.747 3.253 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.194 1.194 13 C 0.229 3.771 14 O -0.452 6.452 15 C -0.030 4.030 16 N -0.307 5.307 17 C -0.006 4.006 18 C -0.088 4.088 19 N -0.312 5.312 20 C -0.084 4.084 21 C 0.310 3.690 22 O -0.428 6.428 23 H 0.216 0.784 24 H 0.126 0.874 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.167 0.833 34 H 0.130 0.870 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.377 -10.103 8.137 13.189 hybrid contribution -0.234 0.004 -0.327 0.402 sum -2.611 -10.099 7.810 13.031 Atomic orbital electron populations 1.24253 0.95319 1.05432 1.02861 1.23197 0.94343 0.95923 0.98077 1.18235 0.84266 0.92875 0.93972 1.43663 1.56436 1.10959 1.05000 1.19636 1.28082 0.87624 1.08634 0.88016 1.25281 0.95013 0.99036 0.97928 1.70078 1.17978 1.41490 1.20509 0.86021 0.79157 0.80964 0.79164 1.20336 1.21157 1.19440 1.20395 0.84471 0.89120 0.83085 1.90538 1.50177 1.61649 1.42837 1.21408 1.02377 0.96909 0.82298 1.46868 1.12893 1.62677 1.08283 1.21530 0.88880 1.01760 0.88441 1.22321 0.91292 0.97916 0.97297 1.60729 1.02288 1.62679 1.05496 1.22055 0.98229 0.98343 0.89769 1.19911 0.81689 0.77114 0.90326 1.90717 1.44236 1.55308 1.52553 0.78379 0.87440 0.91933 0.92225 0.88850 0.88261 0.90222 0.90538 0.88707 0.94115 0.83260 0.87022 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.22 19.25 29.55 0.57 -4.65 16 2 C -0.11 -2.50 10.75 -37.12 -0.40 -2.90 16 3 C 0.23 5.15 4.91 -6.83 -0.03 5.11 16 4 N -0.44 -11.44 2.60 -117.93 -0.31 -11.74 16 5 C -0.31 -8.83 9.28 -14.93 -0.14 -8.97 16 6 H 0.10 3.07 7.42 -52.49 -0.39 2.68 16 7 C 0.03 0.84 4.83 -17.47 -0.08 0.75 16 8 N -0.86 -22.84 9.59 55.50 0.53 -22.31 16 9 Si 0.92 20.96 29.61 -169.99 -5.03 15.92 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 C 0.44 11.18 7.62 -10.99 -0.08 11.10 16 14 O -0.57 -16.48 16.10 5.54 0.09 -16.39 16 15 C 0.10 1.91 4.36 -5.19 -0.02 1.88 16 16 N -0.58 -10.34 2.32 -175.96 -0.41 -10.74 16 17 C 0.12 1.65 6.62 -4.31 -0.03 1.62 16 18 C 0.04 0.42 6.62 -3.67 -0.02 0.40 16 19 N -0.68 -7.73 6.93 -115.10 -0.80 -8.53 16 20 C 0.05 0.63 6.68 -5.20 -0.03 0.59 16 21 C 0.52 9.61 7.55 -11.68 -0.09 9.52 16 22 O -0.55 -12.22 16.33 5.55 0.09 -12.12 16 23 H 0.20 3.21 7.80 -54.08 -0.42 2.79 16 24 H 0.11 2.53 6.60 -51.93 -0.34 2.19 16 25 H 0.06 1.18 6.70 -51.93 -0.35 0.83 16 26 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 27 H 0.09 1.64 7.27 -51.93 -0.38 1.26 16 28 H 0.10 1.93 6.53 -51.93 -0.34 1.59 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.08 0.89 7.98 -51.93 -0.41 0.48 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.35 2.76 8.90 -39.29 -0.35 2.41 16 34 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 301.43 15.07 4.54 4.54 Total: -1.00 -35.62 301.43 -5.89 -41.51 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.23 Total: 5.40 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: -0.37 Total: 14.46 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.98 Total: -53.33 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: 0.18 Total: -28.51 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.62 -5.89 -41.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705915054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.399 kcal (2) G-P(sol) polarization free energy of solvation -35.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds