Wall clock time and date at job start Mon Mar 30 2020 04:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47241 * 232.71516 * 3 2 1 5 5 C 1.37098 * 120.00266 * 263.93198 * 4 3 2 6 6 H 1.08000 * 120.00316 * 199.74861 * 5 4 3 7 7 C 1.38956 * 120.00018 * 19.75027 * 5 4 3 8 8 N 1.31407 * 119.99626 * 21.74324 * 7 5 4 9 9 Si 1.86802 * 119.99939 * 201.74925 * 7 5 4 10 10 H 1.48505 * 109.46918 * 90.00098 * 9 7 5 11 11 H 1.48501 * 109.46630 * 209.99784 * 9 7 5 12 12 H 1.48495 * 109.47177 * 329.99911 * 9 7 5 13 13 C 1.34775 * 119.99904 * 83.92558 * 4 3 2 14 14 O 1.21298 * 120.00274 * 180.02562 * 13 4 3 15 15 C 1.50700 * 119.99974 * 0.02562 * 13 4 3 16 16 N 1.46506 * 109.47162 * 179.97438 * 15 13 4 17 17 C 1.46013 * 118.53737 * 89.99535 * 16 15 13 18 18 C 1.52983 * 110.04145 * 161.81456 * 17 16 15 19 19 N 1.47191 * 108.72432 * 50.29587 * 18 17 16 20 20 C 1.46896 * 110.17875 * 290.99958 * 19 18 17 21 21 C 1.33710 * 118.53556 * 269.73225 * 16 15 13 22 22 O 1.21283 * 118.62698 * 1.70509 * 21 16 15 23 23 H 4.40639 * 5.51331 * 179.97438 * 4 1 2 24 24 H 1.09005 * 109.47032 * 112.71809 * 3 2 1 25 25 H 1.08999 * 109.47653 * 352.71874 * 3 2 1 26 26 H 0.96997 * 119.99860 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.47200 * 299.99415 * 15 13 4 28 28 H 1.08997 * 109.47580 * 59.99919 * 15 13 4 29 29 H 1.08995 * 109.37546 * 281.99780 * 17 16 15 30 30 H 1.09005 * 109.36983 * 41.64401 * 17 16 15 31 31 H 1.08994 * 109.59018 * 170.06390 * 18 17 16 32 32 H 1.08994 * 109.59594 * 290.37517 * 18 17 16 33 33 H 1.00909 * 110.99585 * 167.62909 * 19 18 17 34 34 H 1.08996 * 109.39220 * 170.46201 * 20 19 18 35 35 H 1.09005 * 109.38217 * 290.25014 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 0.8376 1.0989 5 6 3.4802 2.1433 0.8647 6 1 4.1231 2.6643 1.5586 7 6 3.0039 2.7963 -0.2656 8 7 1.9232 2.3579 -0.8712 9 14 3.9000 4.2972 -0.9242 10 1 4.9261 3.8687 -1.9085 11 1 2.9273 5.2035 -1.5859 12 1 4.5587 5.0125 0.1981 13 6 3.2423 0.3240 2.3403 14 8 3.6459 1.0170 3.2503 15 6 2.8621 -1.1114 2.5977 16 7 3.0690 -1.4249 4.0138 17 6 1.9647 -1.2095 4.9444 18 6 2.2068 -1.9936 6.2356 19 7 3.5649 -1.6982 6.7202 20 6 4.5639 -2.2832 5.8160 21 6 4.2589 -1.9007 4.3954 22 8 5.1301 -2.0245 3.5608 23 1 -1.0501 0.0000 -0.0004 24 1 3.0091 0.3977 -0.9480 25 1 3.0098 -1.0185 0.1302 26 1 1.5909 2.8136 -1.6604 27 1 1.8133 -1.2609 2.3416 28 1 3.4824 -1.7669 1.9864 29 1 1.8884 -0.1471 5.1753 30 1 1.0347 -1.5459 4.4860 31 1 1.4771 -1.6935 6.9876 32 1 2.1108 -3.0612 6.0384 33 1 3.6924 -2.0314 7.6641 34 1 5.5547 -1.9185 6.0867 35 1 4.5412 -3.3693 5.9059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705915054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:28 Heat of formation + Delta-G solvation = -6.689386 kcal Electronic energy + Delta-G solvation = -20510.992393 eV Core-core repulsion = 17317.769775 eV Total energy + Delta-G solvation = -3193.222618 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 3.39 seconds Orbital eigenvalues (eV) -41.66044 -40.14999 -37.77325 -37.11879 -35.60287 -34.03058 -33.03549 -30.91044 -29.74859 -28.17144 -26.77813 -25.69069 -24.05004 -21.31205 -19.73862 -19.37584 -18.52421 -18.26127 -18.08268 -17.79586 -16.85259 -16.35026 -16.17494 -15.93202 -15.60895 -15.55631 -14.81885 -14.42969 -14.29366 -14.13424 -13.89064 -13.55468 -13.22541 -13.09928 -12.82356 -12.71471 -12.50139 -12.25800 -12.16149 -11.18639 -11.12731 -11.03915 -10.72945 -10.57155 -9.83889 -9.67504 -9.53968 -8.33648 -5.95847 1.34373 1.39346 1.45806 1.53120 1.85637 1.96801 2.16248 2.31952 2.37950 3.00819 3.14072 3.21871 3.50936 3.84002 3.86814 4.02734 4.13635 4.22440 4.28255 4.32923 4.45323 4.56221 4.66704 4.79976 4.90328 4.98326 5.21529 5.42287 5.44487 5.72357 6.03615 6.39430 6.42703 6.44847 7.06336 7.13731 7.15184 7.38336 7.96075 8.64301 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.026700 B = 0.005843 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.419545 B = 4790.699847 C = 5247.887304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.160 4.160 3 C 0.233 3.767 4 N -0.451 5.451 5 C -0.354 4.354 6 H 0.066 0.934 7 C 0.007 3.993 8 N -0.866 5.866 9 Si 0.982 3.018 10 H -0.265 1.265 11 H -0.273 1.273 12 H -0.281 1.281 13 C 0.428 3.572 14 O -0.621 6.621 15 C 0.109 3.891 16 N -0.579 5.579 17 C 0.107 3.893 18 C 0.050 3.950 19 N -0.695 5.695 20 C 0.058 3.942 21 C 0.506 3.494 22 O -0.601 6.601 23 H 0.237 0.763 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.273 0.727 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.046 0.954 30 H 0.103 0.897 31 H 0.126 0.874 32 H 0.065 0.935 33 H 0.372 0.628 34 H 0.110 0.890 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.707 -12.346 8.958 15.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.161 4.161 3 C 0.110 3.890 4 N -0.170 5.170 5 C -0.482 4.482 6 H 0.084 0.916 7 C -0.197 4.197 8 N -0.503 5.503 9 Si 0.806 3.194 10 H -0.190 1.190 11 H -0.198 1.198 12 H -0.206 1.206 13 C 0.217 3.783 14 O -0.507 6.507 15 C -0.018 4.018 16 N -0.310 5.310 17 C -0.015 4.015 18 C -0.079 4.079 19 N -0.331 5.331 20 C -0.074 4.074 21 C 0.296 3.704 22 O -0.482 6.482 23 H 0.253 0.747 24 H 0.107 0.893 25 H 0.110 0.890 26 H 0.083 0.917 27 H 0.136 0.864 28 H 0.119 0.881 29 H 0.064 0.936 30 H 0.121 0.879 31 H 0.144 0.856 32 H 0.083 0.917 33 H 0.194 0.806 34 H 0.128 0.872 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.151 -11.395 8.542 14.834 hybrid contribution 0.217 0.435 -0.475 0.680 sum -3.934 -10.960 8.067 14.166 Atomic orbital electron populations 1.25141 0.96200 1.03180 1.00520 1.23265 0.94707 0.97978 1.00193 1.18246 0.85201 0.93583 0.91949 1.43877 1.56181 1.10676 1.06232 1.19460 1.29716 0.89342 1.09669 0.91572 1.25935 0.95269 1.01390 0.97098 1.70153 1.17844 1.42051 1.20206 0.85121 0.78356 0.77743 0.78187 1.19045 1.19762 1.20645 1.21374 0.83424 0.91160 0.82341 1.90484 1.52376 1.63541 1.44306 1.21234 1.03499 0.92807 0.84238 1.47137 1.14024 1.61798 1.07998 1.21847 0.88834 1.00746 0.90095 1.22364 0.91238 0.98575 0.95767 1.60638 1.02538 1.63401 1.06504 1.21956 0.98541 1.00347 0.86535 1.21005 0.81003 0.76163 0.92237 1.90679 1.45658 1.57466 1.54434 0.74674 0.89256 0.88960 0.91683 0.86375 0.88119 0.93579 0.87899 0.85645 0.91682 0.80625 0.87184 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.74 19.25 74.32 1.43 -7.31 16 2 C -0.16 -6.88 10.75 31.12 0.33 -6.55 16 3 C 0.23 10.53 4.91 84.57 0.42 10.94 16 4 N -0.45 -24.22 2.60 -645.41 -1.68 -25.89 16 5 C -0.35 -20.91 9.28 84.04 0.78 -20.13 16 6 H 0.07 4.28 7.42 -2.91 -0.02 4.26 16 7 C 0.01 0.39 4.83 84.93 0.41 0.80 16 8 N -0.87 -45.59 9.59 21.66 0.21 -45.38 16 9 Si 0.98 43.43 29.61 68.60 2.03 45.46 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 C 0.43 22.51 7.62 87.66 0.67 23.18 16 14 O -0.62 -37.95 16.10 -3.09 -0.05 -38.00 16 15 C 0.11 4.35 4.36 85.63 0.37 4.72 16 16 N -0.58 -20.64 2.32 -829.60 -1.92 -22.57 16 17 C 0.11 2.87 6.62 86.47 0.57 3.45 16 18 C 0.05 0.85 6.62 86.24 0.57 1.42 16 19 N -0.69 -14.08 6.93 -518.06 -3.59 -17.66 16 20 C 0.06 1.41 6.68 85.41 0.57 1.98 16 21 C 0.51 18.60 7.55 87.68 0.66 19.26 16 22 O -0.60 -27.39 16.33 -3.04 -0.05 -27.44 16 23 H 0.24 6.66 7.80 -4.41 -0.03 6.62 16 24 H 0.09 4.30 6.60 -2.38 -0.02 4.28 16 25 H 0.09 3.50 6.70 -2.39 -0.02 3.48 16 26 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 27 H 0.12 4.04 7.27 -2.39 -0.02 4.02 16 28 H 0.10 3.96 6.53 -2.39 -0.02 3.94 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.10 2.16 7.98 -2.38 -0.02 2.14 16 31 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 0.85 8.08 -2.39 -0.02 0.84 16 33 H 0.37 4.63 8.90 -89.69 -0.80 3.84 16 34 H 0.11 2.72 8.14 -2.39 -0.02 2.71 16 35 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -81.69 301.43 2.06 -79.63 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.32 Total: 20.10 kcal Atomic # 6 Polarization: 24.97 SS G_CDS: 6.79 Total: 31.76 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -6.98 Total: -111.51 kcal Atomic # 8 Polarization: -65.34 SS G_CDS: -0.10 Total: -65.44 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -81.69 2.06 -79.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705915054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.945 kcal (2) G-P(sol) polarization free energy of solvation -81.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.39 seconds