Wall clock time and date at job start Mon Mar 30 2020 04:55:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.36342 * 126.19567 * 2 1
4 4 C 1.36253 * 106.88383 * 180.14018 * 3 2 1
5 5 C 1.47253 * 126.15920 * 179.87991 * 4 3 2
6 6 O 1.21633 * 120.00424 * 354.10300 * 5 4 3
7 7 N 1.34784 * 119.99449 * 174.09956 * 5 4 3
8 8 C 1.46497 * 119.99828 * 5.49855 * 7 5 4
9 9 C 1.50697 * 109.47359 * 83.63358 * 8 7 5
10 10 H 1.08002 * 119.99956 * 359.97438 * 9 8 7
11 11 C 1.37881 * 120.00434 * 179.97438 * 9 8 7
12 12 N 1.31513 * 119.99432 * 359.97438 * 11 9 8
13 13 Si 1.86794 * 120.00171 * 180.02562 * 11 9 8
14 14 H 1.48495 * 109.47200 * 359.97438 * 13 11 9
15 15 H 1.48506 * 109.47114 * 120.00249 * 13 11 9
16 16 H 1.48503 * 109.47032 * 239.99610 * 13 11 9
17 17 C 1.46500 * 119.99949 * 185.49523 * 7 5 4
18 18 C 1.52998 * 117.49651 * 16.61367 * 17 7 5
19 19 C 1.52995 * 59.99951 * 252.51309 * 18 17 7
20 20 N 1.36026 * 107.66750 * 359.61756 * 4 3 2
21 21 C 1.30701 * 108.94888 * 0.24227 * 20 4 3
22 22 O 1.35449 * 125.55384 * 180.02562 * 21 20 4
23 23 H 1.08999 * 109.47252 * 270.26018 * 1 2 3
24 24 H 1.09000 * 109.47435 * 30.26000 * 1 2 3
25 25 H 1.08999 * 109.47134 * 150.25920 * 1 2 3
26 26 H 1.07999 * 126.55713 * 0.03454 * 3 2 1
27 27 H 1.09005 * 109.47365 * 323.63389 * 8 7 5
28 28 H 1.09008 * 109.46911 * 203.63185 * 8 7 5
29 29 H 0.97003 * 119.99958 * 180.02562 * 12 11 9
30 30 H 1.08991 * 115.54805 * 162.32046 * 17 7 5
31 31 H 1.09002 * 117.50089 * 0.02562 * 18 17 7
32 32 H 1.09006 * 117.49565 * 145.01715 * 18 17 7
33 33 H 1.09007 * 117.49729 * 252.50966 * 19 18 17
34 34 H 1.09003 * 117.50079 * 107.49798 * 19 18 17
35 35 H 0.96703 * 114.00323 * 89.96784 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2702 1.1003 0.0000
4 6 3.5560 0.6497 -0.0032
5 6 4.7692 1.4843 -0.0069
6 8 4.6761 2.6922 -0.1155
7 7 5.9828 0.9097 0.1102
8 6 6.1041 -0.5502 0.1198
9 6 6.1260 -1.0618 -1.2974
10 1 6.0560 -0.3689 -2.1229
11 6 6.2353 -2.4146 -1.5405
12 7 6.3209 -3.2584 -0.5353
13 14 6.2631 -3.0487 -3.2973
14 1 6.1538 -1.9051 -4.2381
15 1 7.5368 -3.7720 -3.5424
16 1 5.1204 -3.9734 -3.5079
17 6 7.1805 1.7451 0.2277
18 6 6.9822 3.2157 0.6004
19 6 7.3871 2.8357 -0.8252
20 7 3.5170 -0.7100 0.0036
21 6 2.2692 -1.0988 0.0055
22 8 1.8451 -2.3851 0.0123
23 1 -0.3634 0.0047 1.0276
24 1 -0.3634 0.8876 -0.5179
25 1 -0.3633 -0.8923 -0.5098
26 1 1.9500 2.1317 0.0005
27 1 5.2544 -0.9819 0.6489
28 1 7.0282 -0.8346 0.6231
29 1 6.3982 -4.2101 -0.7062
30 1 8.0677 1.2431 0.6132
31 1 5.9607 3.5616 0.7586
32 1 7.7392 3.6815 1.2315
33 1 8.4106 3.0515 -1.1322
34 1 6.6320 2.9318 -1.6054
35 1 1.7222 -2.7541 0.8977
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000708394994.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:55:26
Heat of formation + Delta-G solvation = 51.664980 kcal
Electronic energy + Delta-G solvation = -20682.115117 eV
Core-core repulsion = 17491.422934 eV
Total energy + Delta-G solvation = -3190.692183 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 265.121 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.68746 -39.20669 -36.89027 -35.56771 -34.34272 -33.26272 -31.81208 -28.61956
-27.04710 -26.72786 -23.57406 -22.42343 -21.73569 -21.32777 -20.74095 -18.70887
-17.78661 -16.62821 -16.11985 -15.86467 -15.55093 -15.02016 -14.33896 -14.24692
-14.04893 -14.01039 -13.59855 -12.90593 -12.77811 -12.37083 -12.18294 -11.99857
-11.48090 -11.37139 -10.98344 -10.73102 -10.65257 -10.42260 -10.01722 -9.68252
-9.38640 -9.25897 -8.98171 -8.76835 -8.13464 -8.04753 -7.28643 -5.84034
-3.83066 1.97096 2.62965 2.87515 3.40129 3.47297 3.52343 3.87548
4.13091 4.29719 4.59408 4.73104 4.75777 5.03771 5.06213 5.31494
5.37383 5.52644 5.59099 5.70165 5.77167 5.94311 6.26853 6.30000
6.31647 6.66471 6.69859 6.89284 6.94625 7.12175 7.66704 7.86201
8.05611 8.10173 8.31594 8.45820 8.51753 9.09574 9.20858 9.77939
11.24596
Molecular weight = 265.12amu
Principal moments of inertia in cm(-1)
A = 0.011742 B = 0.011188 C = 0.006380
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2384.090304 B = 2502.014020 C = 4387.343501
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.072 3.928
2 N -0.472 5.472
3 C 0.019 3.981
4 C -0.029 4.029
5 C 0.600 3.400
6 O -0.572 6.572
7 N -0.552 5.552
8 C 0.228 3.772
9 C -0.501 4.501
10 H 0.050 0.950
11 C 0.070 3.930
12 N -0.891 5.891
13 Si 0.886 3.114
14 H -0.277 1.277
15 H -0.287 1.287
16 H -0.286 1.286
17 C 0.087 3.913
18 C -0.203 4.203
19 C -0.188 4.188
20 N -0.381 5.381
21 C 0.355 3.645
22 O -0.438 6.438
23 H 0.074 0.926
24 H 0.084 0.916
25 H 0.087 0.913
26 H 0.187 0.813
27 H 0.085 0.915
28 H 0.024 0.976
29 H 0.257 0.743
30 H 0.123 0.877
31 H 0.134 0.866
32 H 0.079 0.921
33 H 0.086 0.914
34 H 0.093 0.907
35 H 0.394 0.606
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.090 6.166 4.670 12.714
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 N -0.168 5.168
3 C -0.117 4.117
4 C -0.159 4.159
5 C 0.389 3.611
6 O -0.455 6.455
7 N -0.278 5.278
8 C 0.109 3.891
9 C -0.540 4.540
10 H 0.068 0.932
11 C -0.131 4.131
12 N -0.531 5.531
13 Si 0.714 3.286
14 H -0.202 1.202
15 H -0.213 1.213
16 H -0.212 1.212
17 C -0.019 4.019
18 C -0.240 4.240
19 C -0.227 4.227
20 N -0.109 5.109
21 C 0.055 3.945
22 O -0.237 6.237
23 H 0.092 0.908
24 H 0.103 0.897
25 H 0.106 0.894
26 H 0.204 0.796
27 H 0.103 0.897
28 H 0.042 0.958
29 H 0.066 0.934
30 H 0.141 0.859
31 H 0.152 0.848
32 H 0.098 0.902
33 H 0.105 0.895
34 H 0.112 0.888
35 H 0.250 0.750
Dipole moment (debyes) X Y Z Total
from point charges -9.539 5.911 4.049 11.930
hybrid contribution -0.772 -0.394 -0.728 1.132
sum -10.310 5.517 3.321 12.156
Atomic orbital electron populations
1.21997 0.77143 1.04753 1.03225 1.45970 1.07605 1.06837 1.56400
1.22401 0.90061 0.91878 1.07376 1.20466 0.92999 0.90111 1.12302
1.16896 0.82214 0.85596 0.76434 1.90531 1.86953 1.13871 1.54170
1.47627 1.03190 1.09849 1.67169 1.20034 0.99449 0.71184 0.98430
1.21259 1.49092 0.91816 0.91826 0.93161 1.24715 0.95451 0.96610
0.96320 1.69926 1.51063 1.02252 1.29880 0.86643 0.77239 0.78797
0.85877 1.20152 1.21308 1.21206 1.21570 0.90078 0.86749 1.03496
1.23795 1.05020 0.97489 0.97728 1.23110 1.01384 1.04785 0.93416
1.71790 1.13679 1.09936 1.15483 1.20944 0.84427 0.81298 1.07782
1.84907 1.86740 1.18615 1.33430 0.90773 0.89681 0.89384 0.79596
0.89742 0.95772 0.93357 0.85898 0.84804 0.90244 0.89531 0.88829
0.75022
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.63 11.11 59.85 0.66 1.30 16
2 N -0.47 -6.91 3.16 -125.77 -0.40 -7.31 16
3 C 0.02 0.32 11.30 -16.26 -0.18 0.13 16
4 C -0.03 -0.61 6.66 -83.06 -0.55 -1.16 16
5 C 0.60 13.52 7.40 -12.59 -0.09 13.43 16
6 O -0.57 -12.72 12.62 5.25 0.07 -12.65 16
7 N -0.55 -12.80 2.84 -168.80 -0.48 -13.28 16
8 C 0.23 5.94 4.81 -5.20 -0.02 5.91 16
9 C -0.50 -14.26 8.55 -34.44 -0.29 -14.56 16
10 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16
11 C 0.07 2.01 5.46 -17.82 -0.10 1.92 16
12 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16
13 Si 0.89 22.59 29.54 -169.99 -5.02 17.57 16
14 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16
15 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16
16 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16
17 C 0.09 1.75 6.62 -67.93 -0.45 1.30 16
18 C -0.20 -3.62 9.63 -26.73 -0.26 -3.88 16
19 C -0.19 -3.52 9.87 -26.74 -0.26 -3.79 16
20 N -0.38 -8.58 7.17 -11.22 -0.08 -8.66 16
21 C 0.36 6.54 9.03 -89.18 -0.81 5.74 16
22 O -0.44 -7.08 13.55 -18.04 -0.24 -7.32 16
23 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16
24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16
26 H 0.19 2.47 8.06 -52.49 -0.42 2.04 16
27 H 0.09 2.30 5.16 -51.93 -0.27 2.03 16
28 H 0.02 0.66 7.95 -51.92 -0.41 0.24 16
29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16
30 H 0.12 2.30 8.03 -51.93 -0.42 1.89 16
31 H 0.13 2.63 5.21 -52.13 -0.27 2.36 16
32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16
33 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16
34 H 0.09 1.95 7.59 -51.93 -0.39 1.55 16
35 H 0.39 4.21 9.06 45.56 0.41 4.62 16
LS Contribution 301.80 15.07 4.55 4.55
Total: -1.00 -34.85 301.80 -6.66 -41.51
By element:
Atomic # 1 Polarization: 8.06 SS G_CDS: -3.43 Total: 4.63 kcal
Atomic # 6 Polarization: 8.70 SS G_CDS: -2.36 Total: 6.34 kcal
Atomic # 7 Polarization: -54.41 SS G_CDS: -0.22 Total: -54.63 kcal
Atomic # 8 Polarization: -19.79 SS G_CDS: -0.18 Total: -19.97 kcal
Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal
Total LS contribution 4.55 Total: 4.55 kcal
Total: -34.85 -6.66 -41.51 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000708394994.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.178 kcal
(2) G-P(sol) polarization free energy of solvation -34.850 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.328 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.665 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds