Wall clock time and date at job start Mon Mar 30 2020 04:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36342 * 126.19567 * 2 1 4 4 C 1.36253 * 106.88383 * 180.14018 * 3 2 1 5 5 C 1.47253 * 126.15920 * 179.87991 * 4 3 2 6 6 O 1.21633 * 120.00424 * 354.10300 * 5 4 3 7 7 N 1.34784 * 119.99449 * 174.09956 * 5 4 3 8 8 C 1.46497 * 119.99828 * 5.49855 * 7 5 4 9 9 C 1.50697 * 109.47359 * 83.63358 * 8 7 5 10 10 H 1.08002 * 119.99956 * 359.97438 * 9 8 7 11 11 C 1.37881 * 120.00434 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99432 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00171 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47200 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47114 * 120.00249 * 13 11 9 16 16 H 1.48503 * 109.47032 * 239.99610 * 13 11 9 17 17 C 1.46500 * 119.99949 * 185.49523 * 7 5 4 18 18 C 1.52998 * 117.49651 * 16.61367 * 17 7 5 19 19 C 1.52995 * 59.99951 * 252.51309 * 18 17 7 20 20 N 1.36026 * 107.66750 * 359.61756 * 4 3 2 21 21 C 1.30701 * 108.94888 * 0.24227 * 20 4 3 22 22 O 1.35449 * 125.55384 * 180.02562 * 21 20 4 23 23 H 1.08999 * 109.47252 * 270.26018 * 1 2 3 24 24 H 1.09000 * 109.47435 * 30.26000 * 1 2 3 25 25 H 1.08999 * 109.47134 * 150.25920 * 1 2 3 26 26 H 1.07999 * 126.55713 * 0.03454 * 3 2 1 27 27 H 1.09005 * 109.47365 * 323.63389 * 8 7 5 28 28 H 1.09008 * 109.46911 * 203.63185 * 8 7 5 29 29 H 0.97003 * 119.99958 * 180.02562 * 12 11 9 30 30 H 1.08991 * 115.54805 * 162.32046 * 17 7 5 31 31 H 1.09002 * 117.50089 * 0.02562 * 18 17 7 32 32 H 1.09006 * 117.49565 * 145.01715 * 18 17 7 33 33 H 1.09007 * 117.49729 * 252.50966 * 19 18 17 34 34 H 1.09003 * 117.50079 * 107.49798 * 19 18 17 35 35 H 0.96703 * 114.00323 * 89.96784 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2702 1.1003 0.0000 4 6 3.5560 0.6497 -0.0032 5 6 4.7692 1.4843 -0.0069 6 8 4.6761 2.6922 -0.1155 7 7 5.9828 0.9097 0.1102 8 6 6.1041 -0.5502 0.1198 9 6 6.1260 -1.0618 -1.2974 10 1 6.0560 -0.3689 -2.1229 11 6 6.2353 -2.4146 -1.5405 12 7 6.3209 -3.2584 -0.5353 13 14 6.2631 -3.0487 -3.2973 14 1 6.1538 -1.9051 -4.2381 15 1 7.5368 -3.7720 -3.5424 16 1 5.1204 -3.9734 -3.5079 17 6 7.1805 1.7451 0.2277 18 6 6.9822 3.2157 0.6004 19 6 7.3871 2.8357 -0.8252 20 7 3.5170 -0.7100 0.0036 21 6 2.2692 -1.0988 0.0055 22 8 1.8451 -2.3851 0.0123 23 1 -0.3634 0.0047 1.0276 24 1 -0.3634 0.8876 -0.5179 25 1 -0.3633 -0.8923 -0.5098 26 1 1.9500 2.1317 0.0005 27 1 5.2544 -0.9819 0.6489 28 1 7.0282 -0.8346 0.6231 29 1 6.3982 -4.2101 -0.7062 30 1 8.0677 1.2431 0.6132 31 1 5.9607 3.5616 0.7586 32 1 7.7392 3.6815 1.2315 33 1 8.4106 3.0515 -1.1322 34 1 6.6320 2.9318 -1.6054 35 1 1.7222 -2.7541 0.8977 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708394994.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:26 Heat of formation + Delta-G solvation = 51.664980 kcal Electronic energy + Delta-G solvation = -20682.115117 eV Core-core repulsion = 17491.422934 eV Total energy + Delta-G solvation = -3190.692183 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.68746 -39.20669 -36.89027 -35.56771 -34.34272 -33.26272 -31.81208 -28.61956 -27.04710 -26.72786 -23.57406 -22.42343 -21.73569 -21.32777 -20.74095 -18.70887 -17.78661 -16.62821 -16.11985 -15.86467 -15.55093 -15.02016 -14.33896 -14.24692 -14.04893 -14.01039 -13.59855 -12.90593 -12.77811 -12.37083 -12.18294 -11.99857 -11.48090 -11.37139 -10.98344 -10.73102 -10.65257 -10.42260 -10.01722 -9.68252 -9.38640 -9.25897 -8.98171 -8.76835 -8.13464 -8.04753 -7.28643 -5.84034 -3.83066 1.97096 2.62965 2.87515 3.40129 3.47297 3.52343 3.87548 4.13091 4.29719 4.59408 4.73104 4.75777 5.03771 5.06213 5.31494 5.37383 5.52644 5.59099 5.70165 5.77167 5.94311 6.26853 6.30000 6.31647 6.66471 6.69859 6.89284 6.94625 7.12175 7.66704 7.86201 8.05611 8.10173 8.31594 8.45820 8.51753 9.09574 9.20858 9.77939 11.24596 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.011742 B = 0.011188 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.090304 B = 2502.014020 C = 4387.343501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.472 5.472 3 C 0.019 3.981 4 C -0.029 4.029 5 C 0.600 3.400 6 O -0.572 6.572 7 N -0.552 5.552 8 C 0.228 3.772 9 C -0.501 4.501 10 H 0.050 0.950 11 C 0.070 3.930 12 N -0.891 5.891 13 Si 0.886 3.114 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.286 1.286 17 C 0.087 3.913 18 C -0.203 4.203 19 C -0.188 4.188 20 N -0.381 5.381 21 C 0.355 3.645 22 O -0.438 6.438 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.187 0.813 27 H 0.085 0.915 28 H 0.024 0.976 29 H 0.257 0.743 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.090 6.166 4.670 12.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.168 5.168 3 C -0.117 4.117 4 C -0.159 4.159 5 C 0.389 3.611 6 O -0.455 6.455 7 N -0.278 5.278 8 C 0.109 3.891 9 C -0.540 4.540 10 H 0.068 0.932 11 C -0.131 4.131 12 N -0.531 5.531 13 Si 0.714 3.286 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.212 1.212 17 C -0.019 4.019 18 C -0.240 4.240 19 C -0.227 4.227 20 N -0.109 5.109 21 C 0.055 3.945 22 O -0.237 6.237 23 H 0.092 0.908 24 H 0.103 0.897 25 H 0.106 0.894 26 H 0.204 0.796 27 H 0.103 0.897 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.141 0.859 31 H 0.152 0.848 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -9.539 5.911 4.049 11.930 hybrid contribution -0.772 -0.394 -0.728 1.132 sum -10.310 5.517 3.321 12.156 Atomic orbital electron populations 1.21997 0.77143 1.04753 1.03225 1.45970 1.07605 1.06837 1.56400 1.22401 0.90061 0.91878 1.07376 1.20466 0.92999 0.90111 1.12302 1.16896 0.82214 0.85596 0.76434 1.90531 1.86953 1.13871 1.54170 1.47627 1.03190 1.09849 1.67169 1.20034 0.99449 0.71184 0.98430 1.21259 1.49092 0.91816 0.91826 0.93161 1.24715 0.95451 0.96610 0.96320 1.69926 1.51063 1.02252 1.29880 0.86643 0.77239 0.78797 0.85877 1.20152 1.21308 1.21206 1.21570 0.90078 0.86749 1.03496 1.23795 1.05020 0.97489 0.97728 1.23110 1.01384 1.04785 0.93416 1.71790 1.13679 1.09936 1.15483 1.20944 0.84427 0.81298 1.07782 1.84907 1.86740 1.18615 1.33430 0.90773 0.89681 0.89384 0.79596 0.89742 0.95772 0.93357 0.85898 0.84804 0.90244 0.89531 0.88829 0.75022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 11.11 59.85 0.66 1.30 16 2 N -0.47 -6.91 3.16 -125.77 -0.40 -7.31 16 3 C 0.02 0.32 11.30 -16.26 -0.18 0.13 16 4 C -0.03 -0.61 6.66 -83.06 -0.55 -1.16 16 5 C 0.60 13.52 7.40 -12.59 -0.09 13.43 16 6 O -0.57 -12.72 12.62 5.25 0.07 -12.65 16 7 N -0.55 -12.80 2.84 -168.80 -0.48 -13.28 16 8 C 0.23 5.94 4.81 -5.20 -0.02 5.91 16 9 C -0.50 -14.26 8.55 -34.44 -0.29 -14.56 16 10 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 11 C 0.07 2.01 5.46 -17.82 -0.10 1.92 16 12 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 13 Si 0.89 22.59 29.54 -169.99 -5.02 17.57 16 14 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 17 C 0.09 1.75 6.62 -67.93 -0.45 1.30 16 18 C -0.20 -3.62 9.63 -26.73 -0.26 -3.88 16 19 C -0.19 -3.52 9.87 -26.74 -0.26 -3.79 16 20 N -0.38 -8.58 7.17 -11.22 -0.08 -8.66 16 21 C 0.36 6.54 9.03 -89.18 -0.81 5.74 16 22 O -0.44 -7.08 13.55 -18.04 -0.24 -7.32 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.19 2.47 8.06 -52.49 -0.42 2.04 16 27 H 0.09 2.30 5.16 -51.93 -0.27 2.03 16 28 H 0.02 0.66 7.95 -51.92 -0.41 0.24 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.12 2.30 8.03 -51.93 -0.42 1.89 16 31 H 0.13 2.63 5.21 -52.13 -0.27 2.36 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.09 1.95 7.59 -51.93 -0.39 1.55 16 35 H 0.39 4.21 9.06 45.56 0.41 4.62 16 LS Contribution 301.80 15.07 4.55 4.55 Total: -1.00 -34.85 301.80 -6.66 -41.51 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -3.43 Total: 4.63 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -2.36 Total: 6.34 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.22 Total: -54.63 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.18 Total: -19.97 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.85 -6.66 -41.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708394994.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.178 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds