Wall clock time and date at job start Mon Mar 30 2020 04:55:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.36342 * 126.19567 * 2 1
4 4 C 1.36253 * 106.88383 * 180.14018 * 3 2 1
5 5 C 1.47253 * 126.15920 * 179.87991 * 4 3 2
6 6 O 1.21633 * 120.00424 * 354.10300 * 5 4 3
7 7 N 1.34784 * 119.99449 * 174.09956 * 5 4 3
8 8 C 1.46497 * 119.99828 * 5.49855 * 7 5 4
9 9 C 1.50697 * 109.47359 * 83.63358 * 8 7 5
10 10 H 1.08002 * 119.99956 * 359.97438 * 9 8 7
11 11 C 1.37881 * 120.00434 * 179.97438 * 9 8 7
12 12 N 1.31513 * 119.99432 * 359.97438 * 11 9 8
13 13 Si 1.86794 * 120.00171 * 180.02562 * 11 9 8
14 14 H 1.48495 * 109.47200 * 359.97438 * 13 11 9
15 15 H 1.48506 * 109.47114 * 120.00249 * 13 11 9
16 16 H 1.48503 * 109.47032 * 239.99610 * 13 11 9
17 17 C 1.46500 * 119.99949 * 185.49523 * 7 5 4
18 18 C 1.52998 * 117.49651 * 16.61367 * 17 7 5
19 19 C 1.52995 * 59.99951 * 252.51309 * 18 17 7
20 20 N 1.36026 * 107.66750 * 359.61756 * 4 3 2
21 21 C 1.30701 * 108.94888 * 0.24227 * 20 4 3
22 22 O 1.35449 * 125.55384 * 180.02562 * 21 20 4
23 23 H 1.08999 * 109.47252 * 270.26018 * 1 2 3
24 24 H 1.09000 * 109.47435 * 30.26000 * 1 2 3
25 25 H 1.08999 * 109.47134 * 150.25920 * 1 2 3
26 26 H 1.07999 * 126.55713 * 0.03454 * 3 2 1
27 27 H 1.09005 * 109.47365 * 323.63389 * 8 7 5
28 28 H 1.09008 * 109.46911 * 203.63185 * 8 7 5
29 29 H 0.97003 * 119.99958 * 180.02562 * 12 11 9
30 30 H 1.08991 * 115.54805 * 162.32046 * 17 7 5
31 31 H 1.09002 * 117.50089 * 0.02562 * 18 17 7
32 32 H 1.09006 * 117.49565 * 145.01715 * 18 17 7
33 33 H 1.09007 * 117.49729 * 252.50966 * 19 18 17
34 34 H 1.09003 * 117.50079 * 107.49798 * 19 18 17
35 35 H 0.96703 * 114.00323 * 89.96784 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2702 1.1003 0.0000
4 6 3.5560 0.6497 -0.0032
5 6 4.7692 1.4843 -0.0069
6 8 4.6761 2.6922 -0.1155
7 7 5.9828 0.9097 0.1102
8 6 6.1041 -0.5502 0.1198
9 6 6.1260 -1.0618 -1.2974
10 1 6.0560 -0.3689 -2.1229
11 6 6.2353 -2.4146 -1.5405
12 7 6.3209 -3.2584 -0.5353
13 14 6.2631 -3.0487 -3.2973
14 1 6.1538 -1.9051 -4.2381
15 1 7.5368 -3.7720 -3.5424
16 1 5.1204 -3.9734 -3.5079
17 6 7.1805 1.7451 0.2277
18 6 6.9822 3.2157 0.6004
19 6 7.3871 2.8357 -0.8252
20 7 3.5170 -0.7100 0.0036
21 6 2.2692 -1.0988 0.0055
22 8 1.8451 -2.3851 0.0123
23 1 -0.3634 0.0047 1.0276
24 1 -0.3634 0.8876 -0.5179
25 1 -0.3633 -0.8923 -0.5098
26 1 1.9500 2.1317 0.0005
27 1 5.2544 -0.9819 0.6489
28 1 7.0282 -0.8346 0.6231
29 1 6.3982 -4.2101 -0.7062
30 1 8.0677 1.2431 0.6132
31 1 5.9607 3.5616 0.7586
32 1 7.7392 3.6815 1.2315
33 1 8.4106 3.0515 -1.1322
34 1 6.6320 2.9318 -1.6054
35 1 1.7222 -2.7541 0.8977
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000708394994.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:55:26
Heat of formation + Delta-G solvation = 25.835561 kcal
Electronic energy + Delta-G solvation = -20683.235164 eV
Core-core repulsion = 17491.422934 eV
Total energy + Delta-G solvation = -3191.812231 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 265.121 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-43.02936 -40.83146 -38.16864 -37.17040 -35.97174 -34.76610 -33.78144 -30.01568
-28.80600 -28.05007 -25.17837 -24.35658 -23.19805 -22.77121 -22.07589 -20.14006
-19.16494 -18.57174 -17.78389 -17.38769 -17.01854 -16.40528 -16.22736 -15.78339
-15.60550 -15.19445 -14.97409 -14.51541 -14.18537 -13.84523 -13.57886 -13.39099
-13.27587 -12.89083 -12.73742 -12.66118 -12.37930 -12.10445 -12.04568 -11.36584
-11.18105 -10.70046 -10.58572 -10.50265 -10.10542 -9.46008 -9.02045 -8.02014
-6.07936 0.62418 1.30949 1.36786 1.38533 1.48480 1.58100 2.29434
2.48928 2.60134 2.99561 3.20036 3.29684 3.79335 3.87283 4.02064
4.10786 4.29757 4.30500 4.45293 4.53859 4.71928 4.79518 4.88347
5.02421 5.08994 5.20810 5.31256 5.48624 5.64510 5.79973 5.93600
6.11742 6.31979 6.62169 6.80107 6.88607 7.06254 7.44608 7.57156
9.04744
Molecular weight = 265.12amu
Principal moments of inertia in cm(-1)
A = 0.011742 B = 0.011188 C = 0.006380
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2384.090304 B = 2502.014020 C = 4387.343501
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.063 3.937
2 N -0.456 5.456
3 C 0.054 3.946
4 C -0.083 4.083
5 C 0.592 3.408
6 O -0.578 6.578
7 N -0.565 5.565
8 C 0.246 3.754
9 C -0.503 4.503
10 H 0.027 0.973
11 C 0.029 3.971
12 N -0.914 5.914
13 Si 0.940 3.060
14 H -0.282 1.282
15 H -0.275 1.275
16 H -0.283 1.283
17 C 0.054 3.946
18 C -0.177 4.177
19 C -0.185 4.185
20 N -0.442 5.442
21 C 0.350 3.650
22 O -0.446 6.446
23 H 0.102 0.898
24 H 0.111 0.889
25 H 0.095 0.905
26 H 0.222 0.778
27 H 0.076 0.924
28 H 0.004 0.996
29 H 0.260 0.740
30 H 0.131 0.869
31 H 0.118 0.882
32 H 0.115 0.885
33 H 0.115 0.885
34 H 0.067 0.933
35 H 0.416 0.584
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.543 6.965 4.579 14.238
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 N -0.150 5.150
3 C -0.085 4.085
4 C -0.212 4.212
5 C 0.383 3.617
6 O -0.462 6.462
7 N -0.291 5.291
8 C 0.126 3.874
9 C -0.542 4.542
10 H 0.046 0.954
11 C -0.170 4.170
12 N -0.554 5.554
13 Si 0.767 3.233
14 H -0.207 1.207
15 H -0.200 1.200
16 H -0.209 1.209
17 C -0.051 4.051
18 C -0.214 4.214
19 C -0.223 4.223
20 N -0.170 5.170
21 C 0.049 3.951
22 O -0.248 6.248
23 H 0.121 0.879
24 H 0.129 0.871
25 H 0.113 0.887
26 H 0.238 0.762
27 H 0.094 0.906
28 H 0.022 0.978
29 H 0.069 0.931
30 H 0.149 0.851
31 H 0.135 0.865
32 H 0.133 0.867
33 H 0.133 0.867
34 H 0.085 0.915
35 H 0.275 0.725
Dipole moment (debyes) X Y Z Total
from point charges -11.023 6.710 3.974 13.503
hybrid contribution -0.454 -0.620 -0.669 1.019
sum -11.477 6.090 3.305 13.406
Atomic orbital electron populations
1.22466 0.73137 1.06447 1.05665 1.46127 1.09695 1.05091 1.54126
1.22847 0.88649 0.93406 1.03616 1.20487 0.94133 0.90055 1.16487
1.17228 0.82601 0.85947 0.75966 1.90509 1.87211 1.13848 1.54610
1.47558 1.04587 1.08936 1.67996 1.19595 0.97844 0.73190 0.96795
1.21282 1.48971 0.91734 0.92242 0.95438 1.25319 0.95293 0.96775
0.99571 1.70008 1.51622 1.02463 1.31334 0.85799 0.77656 0.77991
0.81839 1.20690 1.20018 1.20923 1.21894 0.89786 0.87771 1.05633
1.23750 1.05142 0.95149 0.97389 1.23117 1.02195 1.03933 0.93104
1.71495 1.16759 1.11139 1.17649 1.20835 0.84396 0.82465 1.07393
1.84847 1.86456 1.17977 1.35564 0.87935 0.87075 0.88677 0.76177
0.90627 0.97829 0.93132 0.85116 0.86463 0.86675 0.86698 0.91454
0.72480
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.86 11.11 127.77 1.42 2.28 16
2 N -0.46 -12.31 3.16 -662.76 -2.09 -14.40 16
3 C 0.05 1.68 11.30 83.53 0.94 2.62 16
4 C -0.08 -3.52 6.66 40.40 0.27 -3.25 16
5 C 0.59 27.27 7.40 86.61 0.64 27.91 16
6 O -0.58 -25.82 12.62 -4.13 -0.05 -25.87 16
7 N -0.56 -27.01 2.84 -806.19 -2.29 -29.30 16
8 C 0.25 13.35 4.81 85.63 0.41 13.77 16
9 C -0.50 -29.55 8.55 25.60 0.22 -29.33 16
10 H 0.03 1.70 7.81 -2.91 -0.02 1.68 16
11 C 0.03 1.72 5.46 84.66 0.46 2.18 16
12 N -0.91 -54.38 13.29 21.45 0.28 -54.09 16
13 Si 0.94 46.86 29.54 68.60 2.03 48.88 16
14 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16
15 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16
16 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16
17 C 0.05 2.19 6.62 44.99 0.30 2.49 16
18 C -0.18 -6.10 9.63 30.59 0.29 -5.81 16
19 C -0.18 -6.83 9.87 30.59 0.30 -6.53 16
20 N -0.44 -20.26 7.17 -303.18 -2.17 -22.44 16
21 C 0.35 12.68 9.03 179.84 1.62 14.31 16
22 O -0.45 -14.05 13.55 -87.46 -1.18 -15.24 16
23 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16
24 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16
25 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16
26 H 0.22 5.12 8.06 -2.91 -0.02 5.09 16
27 H 0.08 4.31 5.16 -2.38 -0.01 4.30 16
28 H 0.00 0.21 7.95 -2.38 -0.02 0.19 16
29 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16
30 H 0.13 4.96 8.03 -2.39 -0.02 4.94 16
31 H 0.12 4.53 5.21 -5.65 -0.03 4.50 16
32 H 0.12 3.13 8.14 -2.38 -0.02 3.11 16
33 H 0.11 3.52 8.14 -2.38 -0.02 3.50 16
34 H 0.07 2.84 7.59 -2.39 -0.02 2.82 16
35 H 0.42 8.48 9.06 -74.06 -0.67 7.81 16
Total: -1.00 -77.73 301.80 1.84 -75.89
By element:
Atomic # 1 Polarization: 15.49 SS G_CDS: 0.44 Total: 15.92 kcal
Atomic # 6 Polarization: 13.75 SS G_CDS: 6.88 Total: 20.63 kcal
Atomic # 7 Polarization: -113.96 SS G_CDS: -6.27 Total: -120.23 kcal
Atomic # 8 Polarization: -39.87 SS G_CDS: -1.24 Total: -41.11 kcal
Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal
Total: -77.73 1.84 -75.89 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000708394994.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.730 kcal
(2) G-P(sol) polarization free energy of solvation -77.731 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.999 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.895 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.836 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds