Wall clock time and date at job start Mon Mar 30 2020 04:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36342 * 126.19567 * 2 1 4 4 C 1.36253 * 106.88383 * 180.14018 * 3 2 1 5 5 C 1.47253 * 126.15920 * 179.87991 * 4 3 2 6 6 O 1.21633 * 120.00424 * 354.10300 * 5 4 3 7 7 N 1.34784 * 119.99449 * 174.09956 * 5 4 3 8 8 C 1.46497 * 119.99828 * 5.49855 * 7 5 4 9 9 C 1.50697 * 109.47359 * 83.63358 * 8 7 5 10 10 H 1.08002 * 119.99956 * 359.97438 * 9 8 7 11 11 C 1.37881 * 120.00434 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99432 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00171 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47200 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47114 * 120.00249 * 13 11 9 16 16 H 1.48503 * 109.47032 * 239.99610 * 13 11 9 17 17 C 1.46500 * 119.99949 * 185.49523 * 7 5 4 18 18 C 1.52998 * 117.49651 * 16.61367 * 17 7 5 19 19 C 1.52995 * 59.99951 * 252.51309 * 18 17 7 20 20 N 1.36026 * 107.66750 * 359.61756 * 4 3 2 21 21 C 1.30701 * 108.94888 * 0.24227 * 20 4 3 22 22 O 1.35449 * 125.55384 * 180.02562 * 21 20 4 23 23 H 1.08999 * 109.47252 * 270.26018 * 1 2 3 24 24 H 1.09000 * 109.47435 * 30.26000 * 1 2 3 25 25 H 1.08999 * 109.47134 * 150.25920 * 1 2 3 26 26 H 1.07999 * 126.55713 * 0.03454 * 3 2 1 27 27 H 1.09005 * 109.47365 * 323.63389 * 8 7 5 28 28 H 1.09008 * 109.46911 * 203.63185 * 8 7 5 29 29 H 0.97003 * 119.99958 * 180.02562 * 12 11 9 30 30 H 1.08991 * 115.54805 * 162.32046 * 17 7 5 31 31 H 1.09002 * 117.50089 * 0.02562 * 18 17 7 32 32 H 1.09006 * 117.49565 * 145.01715 * 18 17 7 33 33 H 1.09007 * 117.49729 * 252.50966 * 19 18 17 34 34 H 1.09003 * 117.50079 * 107.49798 * 19 18 17 35 35 H 0.96703 * 114.00323 * 89.96784 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2702 1.1003 0.0000 4 6 3.5560 0.6497 -0.0032 5 6 4.7692 1.4843 -0.0069 6 8 4.6761 2.6922 -0.1155 7 7 5.9828 0.9097 0.1102 8 6 6.1041 -0.5502 0.1198 9 6 6.1260 -1.0618 -1.2974 10 1 6.0560 -0.3689 -2.1229 11 6 6.2353 -2.4146 -1.5405 12 7 6.3209 -3.2584 -0.5353 13 14 6.2631 -3.0487 -3.2973 14 1 6.1538 -1.9051 -4.2381 15 1 7.5368 -3.7720 -3.5424 16 1 5.1204 -3.9734 -3.5079 17 6 7.1805 1.7451 0.2277 18 6 6.9822 3.2157 0.6004 19 6 7.3871 2.8357 -0.8252 20 7 3.5170 -0.7100 0.0036 21 6 2.2692 -1.0988 0.0055 22 8 1.8451 -2.3851 0.0123 23 1 -0.3634 0.0047 1.0276 24 1 -0.3634 0.8876 -0.5179 25 1 -0.3633 -0.8923 -0.5098 26 1 1.9500 2.1317 0.0005 27 1 5.2544 -0.9819 0.6489 28 1 7.0282 -0.8346 0.6231 29 1 6.3982 -4.2101 -0.7062 30 1 8.0677 1.2431 0.6132 31 1 5.9607 3.5616 0.7586 32 1 7.7392 3.6815 1.2315 33 1 8.4106 3.0515 -1.1322 34 1 6.6320 2.9318 -1.6054 35 1 1.7222 -2.7541 0.8977 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708394994.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:26 Heat of formation + Delta-G solvation = 25.835561 kcal Electronic energy + Delta-G solvation = -20683.235164 eV Core-core repulsion = 17491.422934 eV Total energy + Delta-G solvation = -3191.812231 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.02936 -40.83146 -38.16864 -37.17040 -35.97174 -34.76610 -33.78144 -30.01568 -28.80600 -28.05007 -25.17837 -24.35658 -23.19805 -22.77121 -22.07589 -20.14006 -19.16494 -18.57174 -17.78389 -17.38769 -17.01854 -16.40528 -16.22736 -15.78339 -15.60550 -15.19445 -14.97409 -14.51541 -14.18537 -13.84523 -13.57886 -13.39099 -13.27587 -12.89083 -12.73742 -12.66118 -12.37930 -12.10445 -12.04568 -11.36584 -11.18105 -10.70046 -10.58572 -10.50265 -10.10542 -9.46008 -9.02045 -8.02014 -6.07936 0.62418 1.30949 1.36786 1.38533 1.48480 1.58100 2.29434 2.48928 2.60134 2.99561 3.20036 3.29684 3.79335 3.87283 4.02064 4.10786 4.29757 4.30500 4.45293 4.53859 4.71928 4.79518 4.88347 5.02421 5.08994 5.20810 5.31256 5.48624 5.64510 5.79973 5.93600 6.11742 6.31979 6.62169 6.80107 6.88607 7.06254 7.44608 7.57156 9.04744 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.011742 B = 0.011188 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.090304 B = 2502.014020 C = 4387.343501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.456 5.456 3 C 0.054 3.946 4 C -0.083 4.083 5 C 0.592 3.408 6 O -0.578 6.578 7 N -0.565 5.565 8 C 0.246 3.754 9 C -0.503 4.503 10 H 0.027 0.973 11 C 0.029 3.971 12 N -0.914 5.914 13 Si 0.940 3.060 14 H -0.282 1.282 15 H -0.275 1.275 16 H -0.283 1.283 17 C 0.054 3.946 18 C -0.177 4.177 19 C -0.185 4.185 20 N -0.442 5.442 21 C 0.350 3.650 22 O -0.446 6.446 23 H 0.102 0.898 24 H 0.111 0.889 25 H 0.095 0.905 26 H 0.222 0.778 27 H 0.076 0.924 28 H 0.004 0.996 29 H 0.260 0.740 30 H 0.131 0.869 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.543 6.965 4.579 14.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.150 5.150 3 C -0.085 4.085 4 C -0.212 4.212 5 C 0.383 3.617 6 O -0.462 6.462 7 N -0.291 5.291 8 C 0.126 3.874 9 C -0.542 4.542 10 H 0.046 0.954 11 C -0.170 4.170 12 N -0.554 5.554 13 Si 0.767 3.233 14 H -0.207 1.207 15 H -0.200 1.200 16 H -0.209 1.209 17 C -0.051 4.051 18 C -0.214 4.214 19 C -0.223 4.223 20 N -0.170 5.170 21 C 0.049 3.951 22 O -0.248 6.248 23 H 0.121 0.879 24 H 0.129 0.871 25 H 0.113 0.887 26 H 0.238 0.762 27 H 0.094 0.906 28 H 0.022 0.978 29 H 0.069 0.931 30 H 0.149 0.851 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.085 0.915 35 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -11.023 6.710 3.974 13.503 hybrid contribution -0.454 -0.620 -0.669 1.019 sum -11.477 6.090 3.305 13.406 Atomic orbital electron populations 1.22466 0.73137 1.06447 1.05665 1.46127 1.09695 1.05091 1.54126 1.22847 0.88649 0.93406 1.03616 1.20487 0.94133 0.90055 1.16487 1.17228 0.82601 0.85947 0.75966 1.90509 1.87211 1.13848 1.54610 1.47558 1.04587 1.08936 1.67996 1.19595 0.97844 0.73190 0.96795 1.21282 1.48971 0.91734 0.92242 0.95438 1.25319 0.95293 0.96775 0.99571 1.70008 1.51622 1.02463 1.31334 0.85799 0.77656 0.77991 0.81839 1.20690 1.20018 1.20923 1.21894 0.89786 0.87771 1.05633 1.23750 1.05142 0.95149 0.97389 1.23117 1.02195 1.03933 0.93104 1.71495 1.16759 1.11139 1.17649 1.20835 0.84396 0.82465 1.07393 1.84847 1.86456 1.17977 1.35564 0.87935 0.87075 0.88677 0.76177 0.90627 0.97829 0.93132 0.85116 0.86463 0.86675 0.86698 0.91454 0.72480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 11.11 127.77 1.42 2.28 16 2 N -0.46 -12.31 3.16 -662.76 -2.09 -14.40 16 3 C 0.05 1.68 11.30 83.53 0.94 2.62 16 4 C -0.08 -3.52 6.66 40.40 0.27 -3.25 16 5 C 0.59 27.27 7.40 86.61 0.64 27.91 16 6 O -0.58 -25.82 12.62 -4.13 -0.05 -25.87 16 7 N -0.56 -27.01 2.84 -806.19 -2.29 -29.30 16 8 C 0.25 13.35 4.81 85.63 0.41 13.77 16 9 C -0.50 -29.55 8.55 25.60 0.22 -29.33 16 10 H 0.03 1.70 7.81 -2.91 -0.02 1.68 16 11 C 0.03 1.72 5.46 84.66 0.46 2.18 16 12 N -0.91 -54.38 13.29 21.45 0.28 -54.09 16 13 Si 0.94 46.86 29.54 68.60 2.03 48.88 16 14 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 15 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 16 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 17 C 0.05 2.19 6.62 44.99 0.30 2.49 16 18 C -0.18 -6.10 9.63 30.59 0.29 -5.81 16 19 C -0.18 -6.83 9.87 30.59 0.30 -6.53 16 20 N -0.44 -20.26 7.17 -303.18 -2.17 -22.44 16 21 C 0.35 12.68 9.03 179.84 1.62 14.31 16 22 O -0.45 -14.05 13.55 -87.46 -1.18 -15.24 16 23 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.22 5.12 8.06 -2.91 -0.02 5.09 16 27 H 0.08 4.31 5.16 -2.38 -0.01 4.30 16 28 H 0.00 0.21 7.95 -2.38 -0.02 0.19 16 29 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 30 H 0.13 4.96 8.03 -2.39 -0.02 4.94 16 31 H 0.12 4.53 5.21 -5.65 -0.03 4.50 16 32 H 0.12 3.13 8.14 -2.38 -0.02 3.11 16 33 H 0.11 3.52 8.14 -2.38 -0.02 3.50 16 34 H 0.07 2.84 7.59 -2.39 -0.02 2.82 16 35 H 0.42 8.48 9.06 -74.06 -0.67 7.81 16 Total: -1.00 -77.73 301.80 1.84 -75.89 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.44 Total: 15.92 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 6.88 Total: 20.63 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -6.27 Total: -120.23 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -1.24 Total: -41.11 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Total: -77.73 1.84 -75.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708394994.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.730 kcal (2) G-P(sol) polarization free energy of solvation -77.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds