Wall clock time and date at job start Mon Mar 30 2020 04:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36348 * 126.19570 * 2 1 4 4 C 1.36250 * 106.88573 * 180.13431 * 3 2 1 5 5 C 1.47248 * 126.16752 * 179.90366 * 4 3 2 6 6 O 1.21638 * 119.99685 * 359.71503 * 5 4 3 7 7 N 1.34774 * 120.00262 * 179.71234 * 5 4 3 8 8 C 1.47018 * 125.64855 * 359.96220 * 7 5 4 9 9 C 1.54371 * 107.28954 * 181.12777 * 8 7 5 10 10 C 1.55157 * 102.92012 * 22.13400 * 9 8 7 11 11 H 1.09004 * 111.00163 * 82.64427 * 10 9 8 12 12 C 1.50698 * 111.00537 * 206.45210 * 10 9 8 13 13 H 1.08005 * 119.99819 * 356.82674 * 12 10 9 14 14 C 1.37875 * 120.00046 * 176.82016 * 12 10 9 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.47420 * 125.64951 * 180.02562 * 7 5 4 21 21 N 1.36038 * 107.66761 * 359.64345 * 4 3 2 22 22 C 1.30696 * 108.94801 * 0.22340 * 21 4 3 23 23 O 1.35448 * 125.55443 * 179.97438 * 22 21 4 24 24 H 1.08991 * 109.47636 * 270.28691 * 1 2 3 25 25 H 1.09006 * 109.47290 * 30.29281 * 1 2 3 26 26 H 1.08999 * 109.46824 * 150.28579 * 1 2 3 27 27 H 1.07995 * 126.55823 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.88343 * 300.51189 * 8 7 5 29 29 H 1.08997 * 109.88359 * 61.52169 * 8 7 5 30 30 H 1.09004 * 110.70418 * 263.79548 * 9 8 7 31 31 H 1.09002 * 110.75632 * 140.50814 * 9 8 7 32 32 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 33 33 H 1.09004 * 110.36712 * 36.99750 * 20 7 5 34 34 H 1.09003 * 110.46416 * 274.72457 * 20 7 5 35 35 H 0.96698 * 114.00042 * 90.02803 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2701 1.1003 0.0000 4 6 3.5560 0.6498 -0.0031 5 6 4.7692 1.4843 -0.0062 6 8 4.6732 2.6969 -0.0114 7 7 5.9859 0.9046 -0.0032 8 6 6.2456 -0.5424 0.0040 9 6 7.7771 -0.7336 0.0341 10 6 8.2836 0.6144 0.6119 11 1 8.2230 0.6203 1.7003 12 6 9.6883 0.9061 0.1505 13 1 10.2180 0.1862 -0.4557 14 6 10.2971 2.0921 0.5022 15 7 9.6522 2.9686 1.2408 16 14 12.0380 2.4540 -0.0703 17 1 12.4601 3.7838 0.4387 18 1 12.0807 2.4553 -1.5547 19 1 12.9574 1.4106 0.4505 20 6 7.2768 1.6165 -0.0052 21 7 3.5170 -0.7100 0.0032 22 6 2.2692 -1.0988 0.0051 23 8 1.8451 -2.3852 0.0105 24 1 -0.3634 0.0051 1.0275 25 1 -0.3634 0.8874 -0.5184 26 1 -0.3633 -0.8925 -0.5094 27 1 1.9500 2.1317 0.0004 28 1 5.7987 -0.9949 0.8893 29 1 5.8301 -0.9981 -0.8948 30 1 8.1656 -0.8921 -0.9720 31 1 8.0503 -1.5610 0.6890 32 1 8.7481 2.7809 1.5377 33 1 7.2145 2.5168 0.6061 34 1 7.5705 1.8702 -1.0238 35 1 1.7217 -2.7549 0.8955 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708405026.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:10 Heat of formation + Delta-G solvation = -5.902595 kcal Electronic energy + Delta-G solvation = -19969.164326 eV Core-core repulsion = 16775.975826 eV Total energy + Delta-G solvation = -3193.188500 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.25100 -39.07192 -37.51064 -36.63194 -34.37030 -33.09489 -30.43796 -29.18077 -28.03040 -27.22189 -24.92438 -23.18582 -21.64808 -21.51827 -19.95352 -19.14085 -18.27701 -17.32071 -16.70446 -16.36994 -15.67822 -15.25177 -14.80637 -14.56661 -14.32903 -13.75763 -13.69806 -13.17447 -12.84435 -12.79195 -12.39191 -12.19797 -11.96238 -11.55507 -11.33371 -10.78190 -10.68370 -10.19763 -10.03813 -9.97968 -9.84439 -9.51965 -9.45108 -8.62297 -8.55798 -8.38647 -7.79923 -6.32516 -4.07553 1.49094 2.06769 2.30557 3.39898 3.47457 3.49238 3.67968 3.81188 3.88641 4.36061 4.53626 4.56805 4.69149 4.97675 5.05713 5.34256 5.39201 5.66974 5.71559 5.90843 6.01820 6.13352 6.35129 6.44467 6.47601 6.71952 6.83818 6.94045 7.00243 7.18809 7.32818 7.56491 7.62551 8.19593 8.26029 8.44276 8.74796 8.87794 9.64823 11.04276 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.043655 B = 0.004367 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.245567 B = 6410.231113 C = 6928.020394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.467 5.467 3 C 0.035 3.965 4 C -0.030 4.030 5 C 0.602 3.398 6 O -0.554 6.554 7 N -0.597 5.597 8 C 0.117 3.883 9 C -0.124 4.124 10 C 0.028 3.972 11 H 0.031 0.969 12 C -0.595 4.595 13 H 0.054 0.946 14 C 0.021 3.979 15 N -0.907 5.907 16 Si 1.070 2.930 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.288 1.288 20 C 0.107 3.893 21 N -0.445 5.445 22 C 0.369 3.631 23 O -0.440 6.440 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.195 0.805 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.272 0.728 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.206 -8.707 -0.929 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.162 5.162 3 C -0.101 4.101 4 C -0.160 4.160 5 C 0.389 3.611 6 O -0.433 6.433 7 N -0.328 5.328 8 C -0.006 4.006 9 C -0.162 4.162 10 C 0.009 3.991 11 H 0.049 0.951 12 C -0.633 4.633 13 H 0.073 0.927 14 C -0.185 4.185 15 N -0.542 5.542 16 Si 0.898 3.102 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.214 1.214 20 C -0.014 4.014 21 N -0.175 5.175 22 C 0.068 3.932 23 O -0.240 6.240 24 H 0.097 0.903 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.212 0.788 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -17.555 -7.499 -1.476 19.147 hybrid contribution -2.248 -0.981 0.404 2.486 sum -19.803 -8.481 -1.072 21.569 Atomic orbital electron populations 1.22100 0.76084 1.05251 1.03837 1.45818 1.08171 1.06615 1.55602 1.22626 0.89714 0.92328 1.05475 1.20597 0.93684 0.89327 1.12359 1.16484 0.81067 0.85955 0.77545 1.90785 1.86304 1.13081 1.53144 1.48599 1.05755 1.08847 1.69570 1.22006 0.96834 0.80485 1.01232 1.22681 0.92321 0.99756 1.01447 1.20008 0.94131 0.89407 0.95544 0.95097 1.21846 0.98134 1.06336 1.36991 0.92737 1.25878 1.05291 0.92743 0.94554 1.70814 1.14240 1.36492 1.32684 0.83531 0.74458 0.76226 0.76007 1.20781 1.21394 1.21442 1.22983 0.79864 0.97313 1.01215 1.71077 1.16094 1.11295 1.19075 1.20403 0.84278 0.81384 1.07153 1.84883 1.86797 1.18338 1.34026 0.90254 0.89103 0.89050 0.78817 0.91946 0.92031 0.91550 0.91754 0.91554 0.91120 0.92038 0.74352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 11.11 59.84 0.66 1.02 16 2 N -0.47 -4.89 3.16 -125.78 -0.40 -5.28 16 3 C 0.04 0.46 11.29 -16.26 -0.18 0.28 16 4 C -0.03 -0.53 6.81 -83.06 -0.57 -1.09 16 5 C 0.60 12.92 7.84 -12.60 -0.10 12.82 16 6 O -0.55 -13.20 17.13 5.24 0.09 -13.11 16 7 N -0.60 -13.28 3.33 -171.84 -0.57 -13.85 16 8 C 0.12 2.32 5.52 -3.04 -0.02 2.30 16 9 C -0.12 -2.60 6.40 -24.87 -0.16 -2.76 16 10 C 0.03 0.72 2.53 -89.64 -0.23 0.49 16 11 H 0.03 0.84 8.01 -51.93 -0.42 0.42 16 12 C -0.59 -16.53 8.52 -34.44 -0.29 -16.82 16 13 H 0.05 1.49 7.78 -52.48 -0.41 1.08 16 14 C 0.02 0.59 5.35 -17.82 -0.10 0.49 16 15 N -0.91 -27.45 13.47 55.43 0.75 -26.71 16 16 Si 1.07 25.10 29.90 -169.99 -5.08 20.02 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.11 2.71 5.71 -2.55 -0.01 2.69 16 21 N -0.45 -7.25 8.78 -11.22 -0.10 -7.35 16 22 C 0.37 4.64 9.03 -89.17 -0.81 3.84 16 23 O -0.44 -4.14 13.55 -18.03 -0.24 -4.39 16 24 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 0.38 8.13 -51.93 -0.42 -0.04 16 27 H 0.19 2.10 8.06 -52.49 -0.42 1.67 16 28 H 0.06 1.18 7.62 -51.93 -0.40 0.79 16 29 H 0.06 1.17 7.73 -51.93 -0.40 0.77 16 30 H 0.07 1.38 8.03 -51.93 -0.42 0.97 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.27 8.27 5.47 -40.82 -0.22 8.05 16 33 H 0.07 1.94 6.45 -51.93 -0.33 1.60 16 34 H 0.06 1.62 8.03 -51.93 -0.42 1.20 16 35 H 0.40 1.68 9.06 45.56 0.41 2.09 16 LS Contribution 299.53 15.07 4.51 4.51 Total: -1.00 -35.76 299.53 -6.35 -42.11 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -3.51 Total: 0.79 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -1.79 Total: 3.26 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.32 Total: -53.20 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.15 Total: -17.50 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.08 Total: 20.02 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.76 -6.35 -42.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708405026.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.209 kcal (2) G-P(sol) polarization free energy of solvation -35.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds