Wall clock time and date at job start Mon Mar 30 2020 04:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36348 * 126.19570 * 2 1 4 4 C 1.36250 * 106.88573 * 180.13431 * 3 2 1 5 5 C 1.47248 * 126.16752 * 179.90366 * 4 3 2 6 6 O 1.21638 * 119.99685 * 359.71503 * 5 4 3 7 7 N 1.34774 * 120.00262 * 179.71234 * 5 4 3 8 8 C 1.47018 * 125.64855 * 359.96220 * 7 5 4 9 9 C 1.54371 * 107.28954 * 181.12777 * 8 7 5 10 10 C 1.55157 * 102.92012 * 22.13400 * 9 8 7 11 11 H 1.09004 * 111.00163 * 82.64427 * 10 9 8 12 12 C 1.50698 * 111.00537 * 206.45210 * 10 9 8 13 13 H 1.08005 * 119.99819 * 356.82674 * 12 10 9 14 14 C 1.37875 * 120.00046 * 176.82016 * 12 10 9 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.47420 * 125.64951 * 180.02562 * 7 5 4 21 21 N 1.36038 * 107.66761 * 359.64345 * 4 3 2 22 22 C 1.30696 * 108.94801 * 0.22340 * 21 4 3 23 23 O 1.35448 * 125.55443 * 179.97438 * 22 21 4 24 24 H 1.08991 * 109.47636 * 270.28691 * 1 2 3 25 25 H 1.09006 * 109.47290 * 30.29281 * 1 2 3 26 26 H 1.08999 * 109.46824 * 150.28579 * 1 2 3 27 27 H 1.07995 * 126.55823 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.88343 * 300.51189 * 8 7 5 29 29 H 1.08997 * 109.88359 * 61.52169 * 8 7 5 30 30 H 1.09004 * 110.70418 * 263.79548 * 9 8 7 31 31 H 1.09002 * 110.75632 * 140.50814 * 9 8 7 32 32 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 33 33 H 1.09004 * 110.36712 * 36.99750 * 20 7 5 34 34 H 1.09003 * 110.46416 * 274.72457 * 20 7 5 35 35 H 0.96698 * 114.00042 * 90.02803 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2701 1.1003 0.0000 4 6 3.5560 0.6498 -0.0031 5 6 4.7692 1.4843 -0.0062 6 8 4.6732 2.6969 -0.0114 7 7 5.9859 0.9046 -0.0032 8 6 6.2456 -0.5424 0.0040 9 6 7.7771 -0.7336 0.0341 10 6 8.2836 0.6144 0.6119 11 1 8.2230 0.6203 1.7003 12 6 9.6883 0.9061 0.1505 13 1 10.2180 0.1862 -0.4557 14 6 10.2971 2.0921 0.5022 15 7 9.6522 2.9686 1.2408 16 14 12.0380 2.4540 -0.0703 17 1 12.4601 3.7838 0.4387 18 1 12.0807 2.4553 -1.5547 19 1 12.9574 1.4106 0.4505 20 6 7.2768 1.6165 -0.0052 21 7 3.5170 -0.7100 0.0032 22 6 2.2692 -1.0988 0.0051 23 8 1.8451 -2.3852 0.0105 24 1 -0.3634 0.0051 1.0275 25 1 -0.3634 0.8874 -0.5184 26 1 -0.3633 -0.8925 -0.5094 27 1 1.9500 2.1317 0.0004 28 1 5.7987 -0.9949 0.8893 29 1 5.8301 -0.9981 -0.8948 30 1 8.1656 -0.8921 -0.9720 31 1 8.0503 -1.5610 0.6890 32 1 8.7481 2.7809 1.5377 33 1 7.2145 2.5168 0.6061 34 1 7.5705 1.8702 -1.0238 35 1 1.7217 -2.7549 0.8955 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708405026.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:04 Heat of formation + Delta-G solvation = -34.046923 kcal Electronic energy + Delta-G solvation = -19970.384756 eV Core-core repulsion = 16775.975826 eV Total energy + Delta-G solvation = -3194.408930 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.25579 -40.76597 -38.59876 -38.16413 -35.44645 -34.97094 -32.28121 -30.31606 -29.68943 -28.22757 -26.77175 -24.81127 -23.06843 -22.48508 -21.80880 -20.50955 -19.32064 -19.07775 -18.23001 -17.58910 -17.01785 -16.60814 -16.31358 -15.62366 -15.60541 -15.32337 -15.18419 -14.73304 -14.23050 -13.88247 -13.71415 -13.56342 -13.42493 -13.27678 -12.93096 -12.60010 -12.42730 -11.90956 -11.74895 -11.58575 -11.39788 -11.02738 -10.83419 -10.64862 -10.54341 -9.83698 -9.46857 -8.59829 -6.35980 0.40627 1.04998 1.38140 1.56985 1.64962 1.84115 2.00772 2.35138 2.60409 2.74743 3.19554 3.55296 3.70516 3.91251 3.99183 4.15902 4.26766 4.37800 4.41296 4.44615 4.67853 4.69724 4.74498 4.82276 4.98414 5.09414 5.16838 5.23495 5.32446 5.53047 5.63274 6.04349 6.19535 6.49745 6.58215 6.61085 6.66206 7.09981 7.46111 8.76771 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.043655 B = 0.004367 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.245567 B = 6410.231113 C = 6928.020394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.454 5.454 3 C 0.064 3.936 4 C -0.076 4.076 5 C 0.597 3.403 6 O -0.591 6.591 7 N -0.608 5.608 8 C 0.132 3.868 9 C -0.114 4.114 10 C 0.020 3.980 11 H 0.007 0.993 12 C -0.604 4.604 13 H 0.060 0.940 14 C -0.031 4.031 15 N -0.935 5.935 16 Si 1.118 2.882 17 H -0.288 1.288 18 H -0.271 1.271 19 H -0.266 1.266 20 C 0.124 3.876 21 N -0.483 5.483 22 C 0.382 3.618 23 O -0.438 6.438 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.216 0.784 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.258 0.742 33 H 0.036 0.964 34 H 0.041 0.959 35 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.109 -10.597 -1.477 23.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.147 5.147 3 C -0.076 4.076 4 C -0.204 4.204 5 C 0.388 3.612 6 O -0.473 6.473 7 N -0.338 5.338 8 C 0.010 3.990 9 C -0.151 4.151 10 C 0.001 3.999 11 H 0.025 0.975 12 C -0.642 4.642 13 H 0.078 0.922 14 C -0.230 4.230 15 N -0.572 5.572 16 Si 0.939 3.061 17 H -0.214 1.214 18 H -0.196 1.196 19 H -0.191 1.191 20 C 0.001 3.999 21 N -0.213 5.213 22 C 0.079 3.921 23 O -0.241 6.241 24 H 0.121 0.879 25 H 0.127 0.873 26 H 0.124 0.876 27 H 0.233 0.767 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -19.518 -9.466 -2.010 21.786 hybrid contribution -1.858 -0.484 0.593 2.009 sum -21.376 -9.950 -1.417 23.621 Atomic orbital electron populations 1.22552 0.72433 1.06973 1.05937 1.46052 1.10059 1.05042 1.53584 1.22880 0.88635 0.93792 1.02282 1.19996 0.93088 0.89966 1.17336 1.17135 0.81903 0.86116 0.76068 1.90737 1.86998 1.14861 1.54723 1.48651 1.05179 1.09565 1.70417 1.21966 0.95761 0.79050 1.02255 1.22634 0.93016 0.97853 1.01645 1.19949 0.93590 0.92182 0.94198 0.97495 1.22224 0.99275 1.06311 1.36436 0.92224 1.27376 1.08833 0.92800 0.93957 1.70932 1.13925 1.37616 1.34770 0.82930 0.70313 0.76301 0.76566 1.21360 1.19593 1.19100 1.22462 0.82001 0.96385 0.99056 1.70875 1.18712 1.10741 1.21017 1.20380 0.83825 0.82688 1.05193 1.84858 1.86307 1.16688 1.36281 0.87923 0.87251 0.87577 0.76711 0.90905 0.90853 0.91252 0.89560 0.93106 0.94534 0.94059 0.71406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 11.11 127.77 1.42 1.77 16 2 N -0.45 -7.96 3.16 -662.78 -2.09 -10.06 16 3 C 0.06 1.55 11.29 83.53 0.94 2.50 16 4 C -0.08 -2.61 6.81 40.40 0.28 -2.33 16 5 C 0.60 26.44 7.84 86.61 0.68 27.11 16 6 O -0.59 -29.43 17.13 -4.15 -0.07 -29.50 16 7 N -0.61 -27.95 3.33 -815.82 -2.71 -30.66 16 8 C 0.13 5.17 5.52 86.75 0.48 5.65 16 9 C -0.11 -4.73 6.40 31.80 0.20 -4.53 16 10 C 0.02 1.05 2.53 -10.16 -0.03 1.03 16 11 H 0.01 0.39 8.01 -2.38 -0.02 0.37 16 12 C -0.60 -34.16 8.52 25.60 0.22 -33.95 16 13 H 0.06 3.24 7.78 -2.91 -0.02 3.22 16 14 C -0.03 -1.80 5.35 84.65 0.45 -1.34 16 15 N -0.94 -58.88 13.47 21.45 0.29 -58.59 16 16 Si 1.12 50.67 29.90 68.60 2.05 52.72 16 17 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 20 C 0.12 6.58 5.71 86.85 0.50 7.08 16 21 N -0.48 -15.04 8.78 -303.18 -2.66 -17.70 16 22 C 0.38 8.52 9.03 179.84 1.62 10.15 16 23 O -0.44 -6.66 13.55 -87.45 -1.18 -7.85 16 24 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 25 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 26 H 0.11 0.38 8.13 -2.39 -0.02 0.36 16 27 H 0.22 4.15 8.06 -2.91 -0.02 4.13 16 28 H 0.07 2.71 7.62 -2.39 -0.02 2.69 16 29 H 0.07 2.72 7.73 -2.39 -0.02 2.70 16 30 H 0.07 2.84 8.03 -2.38 -0.02 2.82 16 31 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 32 H 0.26 16.62 5.47 -92.71 -0.51 16.12 16 33 H 0.04 2.16 6.45 -2.39 -0.02 2.14 16 34 H 0.04 2.30 8.03 -2.39 -0.02 2.28 16 35 H 0.43 1.90 9.06 -74.06 -0.67 1.23 16 Total: -1.00 -81.48 299.53 1.09 -80.39 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.71 Total: 8.11 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 6.76 Total: 13.14 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -7.18 Total: -117.01 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.26 Total: -37.35 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.05 Total: 52.72 kcal Total: -81.48 1.09 -80.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708405026.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.343 kcal (2) G-P(sol) polarization free energy of solvation -81.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds