Wall clock time and date at job start Mon Mar 30 2020 05:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31877 * 119.00087 * 2 1 4 4 C 1.32807 * 120.90816 * 180.28858 * 3 2 1 5 5 N 1.38505 * 120.51239 * 179.71629 * 4 3 2 6 6 N 1.36594 * 119.99945 * 359.44778 * 5 4 3 7 7 C 1.39895 * 118.97644 * 359.44091 * 4 3 2 8 8 C 1.39045 * 118.18606 * 0.27876 * 7 4 3 9 9 C 1.48449 * 120.50554 * 180.02562 * 8 7 4 10 10 O 1.21475 * 119.99856 * 352.91955 * 9 8 7 11 11 N 1.34775 * 119.99921 * 172.92047 * 9 8 7 12 12 C 1.46502 * 119.99711 * 2.31166 * 11 9 8 13 13 C 1.46498 * 119.99858 * 182.31306 * 11 9 8 14 14 C 1.50694 * 109.47114 * 90.00427 * 13 11 9 15 15 H 1.07997 * 120.00379 * 359.97438 * 14 13 11 16 16 C 1.37876 * 119.99619 * 180.02562 * 14 13 11 17 17 N 1.31513 * 120.00577 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99723 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47005 * 59.99991 * 18 16 14 20 20 H 1.48503 * 109.47066 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47040 * 299.99839 * 18 16 14 22 22 N 1.31530 * 118.99073 * 179.72127 * 2 1 3 23 23 H 1.09001 * 109.47515 * 270.27987 * 1 2 3 24 24 H 1.09004 * 109.46564 * 30.27455 * 1 2 3 25 25 H 1.08997 * 109.47743 * 150.27216 * 1 2 3 26 26 H 0.96998 * 120.00137 * 179.72258 * 5 4 3 27 27 H 1.00894 * 111.00345 * 56.04447 * 6 5 4 28 28 H 1.00903 * 111.00076 * 180.02562 * 6 5 4 29 29 H 1.08003 * 120.90841 * 180.24808 * 7 4 3 30 30 H 1.09006 * 109.47278 * 83.84306 * 12 11 9 31 31 H 1.09001 * 109.46659 * 203.83916 * 12 11 9 32 32 H 1.08993 * 109.47288 * 323.84181 * 12 11 9 33 33 H 1.09005 * 109.46458 * 210.00120 * 13 11 9 34 34 H 1.08999 * 109.47275 * 329.99376 * 13 11 9 35 35 H 0.96998 * 120.00713 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1463 1.1534 0.0000 4 6 3.4736 1.1976 -0.0057 5 7 4.1367 2.4136 -0.0116 6 7 3.4251 3.5795 -0.0229 7 6 4.1918 -0.0029 0.0001 8 6 3.4771 -1.1957 0.0058 9 6 4.1869 -2.4994 0.0127 10 8 5.3943 -2.5343 -0.1162 11 7 3.4918 -3.6444 0.1620 12 6 2.0310 -3.6060 0.2666 13 6 4.1970 -4.9272 0.2197 14 6 4.5429 -5.2463 1.6512 15 1 4.2657 -4.5619 2.4393 16 6 5.2144 -6.4116 1.9548 17 7 5.5525 -7.2449 0.9952 18 14 5.6438 -6.8069 3.7294 19 1 4.3981 -6.8907 4.5332 20 1 6.3586 -8.1073 3.7878 21 1 6.5158 -5.7372 4.2776 22 7 2.1444 -1.1505 0.0056 23 1 -0.3634 0.0050 1.0276 24 1 -0.3632 0.8876 -0.5181 25 1 -0.3634 -0.8923 -0.5096 26 1 5.1064 2.4373 -0.0117 27 1 2.7844 3.6197 0.7554 28 1 4.0408 4.3789 -0.0264 29 1 5.2718 -0.0034 -0.0003 30 1 1.5959 -3.5736 -0.7323 31 1 1.6806 -4.4975 0.7868 32 1 1.7298 -2.7186 0.8231 33 1 3.5567 -5.7121 -0.1831 34 1 5.1115 -4.8660 -0.3703 35 1 6.0251 -8.0646 1.2087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723241128.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:13 Heat of formation + Delta-G solvation = 62.096009 kcal Electronic energy + Delta-G solvation = -19800.878976 eV Core-core repulsion = 16642.931867 eV Total energy + Delta-G solvation = -3157.947108 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.06983 -38.70552 -37.37777 -34.90116 -33.37041 -32.90169 -32.36480 -29.10665 -27.91365 -27.76850 -25.84351 -24.39942 -22.84702 -22.16863 -19.38522 -18.40549 -17.86201 -16.69688 -16.49506 -15.75878 -15.55220 -15.18237 -15.00933 -14.64066 -14.34015 -14.08866 -13.61214 -13.07668 -12.71076 -12.38175 -12.37611 -12.07090 -11.90060 -11.74660 -11.18356 -10.92962 -10.61822 -10.49275 -10.28187 -10.12419 -9.68636 -9.51371 -9.47059 -8.64394 -8.41808 -7.84767 -7.56356 -6.02907 -4.08009 0.86897 1.25601 2.51373 3.33324 3.35670 3.37364 3.41996 3.74169 3.92437 4.14996 4.26444 4.46044 4.80198 4.93608 5.20511 5.30980 5.42128 5.53855 5.54981 5.73442 5.84869 6.06176 6.17712 6.33367 6.44231 6.78488 6.92101 7.09792 7.22367 7.43864 7.55358 7.76903 7.93185 8.23339 8.29141 8.41109 8.85907 9.02673 9.56656 11.05104 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.027581 B = 0.004694 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.965221 B = 5963.552808 C = 6373.804394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.347 3.653 3 N -0.559 5.559 4 C 0.443 3.557 5 N -0.563 5.563 6 N -0.596 5.596 7 C -0.240 4.240 8 C 0.178 3.822 9 C 0.552 3.448 10 O -0.533 6.533 11 N -0.572 5.572 12 C 0.080 3.920 13 C 0.242 3.758 14 C -0.528 4.528 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.894 5.894 18 Si 0.899 3.101 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 N -0.526 5.526 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.416 0.584 27 H 0.345 0.655 28 H 0.354 0.646 29 H 0.152 0.848 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.203 18.558 -1.283 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.078 3.922 3 N -0.285 5.285 4 C 0.198 3.802 5 N -0.290 5.290 6 N -0.221 5.221 7 C -0.270 4.270 8 C 0.034 3.966 9 C 0.335 3.665 10 O -0.410 6.410 11 N -0.301 5.301 12 C -0.064 4.064 13 C 0.123 3.877 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.727 3.273 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 N -0.248 5.248 23 H 0.103 0.897 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.256 0.744 27 H 0.160 0.840 28 H 0.168 0.832 29 H 0.170 0.830 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.788 18.168 -2.076 20.288 hybrid contribution 2.058 0.151 1.959 2.845 sum -6.730 18.319 -0.117 19.517 Atomic orbital electron populations 1.20545 0.85632 1.04115 1.03744 1.23116 0.97851 0.82582 0.88613 1.67645 1.07234 1.31083 1.22496 1.18115 0.88778 0.84538 0.88812 1.42930 1.06354 0.99221 1.80499 1.59908 1.17378 0.94301 1.50545 1.21959 1.02851 0.90988 1.11180 1.21721 0.89348 0.94640 0.90854 1.17725 0.86449 0.82673 0.79614 1.90747 1.13117 1.86133 1.51000 1.48087 1.07698 1.07558 1.66739 1.22206 0.79694 1.03278 1.01197 1.19423 0.93067 0.77475 0.97748 1.21380 1.37377 1.05256 0.92621 0.92450 1.24925 0.95439 0.96002 0.97631 1.69921 1.39933 1.11501 1.31965 0.86544 0.78601 0.77515 0.84673 1.20201 1.21132 1.20222 1.68851 1.08546 1.28400 1.19049 0.89736 0.89838 0.89362 0.74406 0.84031 0.83223 0.82994 0.93683 0.92072 0.88588 0.94489 0.93620 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.31 36.00 0.37 -0.42 16 2 C 0.35 4.87 7.64 -157.35 -1.20 3.67 16 3 N -0.56 -7.87 9.81 -9.98 -0.10 -7.96 16 4 C 0.44 6.07 7.59 -154.87 -1.18 4.89 16 5 N -0.56 -5.55 6.61 31.25 0.21 -5.34 16 6 N -0.60 -4.81 10.07 60.35 0.61 -4.20 16 7 C -0.24 -3.78 9.58 -38.66 -0.37 -4.15 16 8 C 0.18 3.27 6.64 -82.70 -0.55 2.72 16 9 C 0.55 12.48 7.67 -12.05 -0.09 12.39 16 10 O -0.53 -13.71 16.00 5.39 0.09 -13.62 16 11 N -0.57 -13.11 2.86 -183.85 -0.53 -13.63 16 12 C 0.08 1.47 9.35 59.85 0.56 2.03 16 13 C 0.24 6.52 5.15 -5.20 -0.03 6.50 16 14 C -0.53 -15.25 9.39 -34.44 -0.32 -15.57 16 15 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 18 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 N -0.53 -8.57 6.11 -7.40 -0.05 -8.62 16 23 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.42 3.04 8.84 -185.16 -1.64 1.40 16 27 H 0.34 2.72 9.03 -181.37 -1.64 1.09 16 28 H 0.35 1.63 9.21 -181.37 -1.67 -0.04 16 29 H 0.15 2.26 7.74 -52.48 -0.41 1.85 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.12 8.03 -51.93 -0.42 0.70 16 32 H 0.10 1.66 5.25 -51.95 -0.27 1.39 16 33 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 34 H 0.05 1.36 7.39 -51.93 -0.38 0.98 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 306.65 15.07 4.62 4.62 Total: -1.00 -35.06 306.65 -10.42 -45.48 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -8.08 Total: -1.44 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: -2.91 Total: 13.75 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: 0.88 Total: -65.78 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.62 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.06 -10.42 -45.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723241128.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.577 kcal (2) G-P(sol) polarization free energy of solvation -35.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds