Wall clock time and date at job start Mon Mar 30 2020 05:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31877 * 119.00087 * 2 1 4 4 C 1.32807 * 120.90816 * 180.28858 * 3 2 1 5 5 N 1.38505 * 120.51239 * 179.71629 * 4 3 2 6 6 N 1.36594 * 119.99945 * 359.44778 * 5 4 3 7 7 C 1.39895 * 118.97644 * 359.44091 * 4 3 2 8 8 C 1.39045 * 118.18606 * 0.27876 * 7 4 3 9 9 C 1.48449 * 120.50554 * 180.02562 * 8 7 4 10 10 O 1.21475 * 119.99856 * 352.91955 * 9 8 7 11 11 N 1.34775 * 119.99921 * 172.92047 * 9 8 7 12 12 C 1.46502 * 119.99711 * 2.31166 * 11 9 8 13 13 C 1.46498 * 119.99858 * 182.31306 * 11 9 8 14 14 C 1.50694 * 109.47114 * 90.00427 * 13 11 9 15 15 H 1.07997 * 120.00379 * 359.97438 * 14 13 11 16 16 C 1.37876 * 119.99619 * 180.02562 * 14 13 11 17 17 N 1.31513 * 120.00577 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99723 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47005 * 59.99991 * 18 16 14 20 20 H 1.48503 * 109.47066 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47040 * 299.99839 * 18 16 14 22 22 N 1.31530 * 118.99073 * 179.72127 * 2 1 3 23 23 H 1.09001 * 109.47515 * 270.27987 * 1 2 3 24 24 H 1.09004 * 109.46564 * 30.27455 * 1 2 3 25 25 H 1.08997 * 109.47743 * 150.27216 * 1 2 3 26 26 H 0.96998 * 120.00137 * 179.72258 * 5 4 3 27 27 H 1.00894 * 111.00345 * 56.04447 * 6 5 4 28 28 H 1.00903 * 111.00076 * 180.02562 * 6 5 4 29 29 H 1.08003 * 120.90841 * 180.24808 * 7 4 3 30 30 H 1.09006 * 109.47278 * 83.84306 * 12 11 9 31 31 H 1.09001 * 109.46659 * 203.83916 * 12 11 9 32 32 H 1.08993 * 109.47288 * 323.84181 * 12 11 9 33 33 H 1.09005 * 109.46458 * 210.00120 * 13 11 9 34 34 H 1.08999 * 109.47275 * 329.99376 * 13 11 9 35 35 H 0.96998 * 120.00713 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1463 1.1534 0.0000 4 6 3.4736 1.1976 -0.0057 5 7 4.1367 2.4136 -0.0116 6 7 3.4251 3.5795 -0.0229 7 6 4.1918 -0.0029 0.0001 8 6 3.4771 -1.1957 0.0058 9 6 4.1869 -2.4994 0.0127 10 8 5.3943 -2.5343 -0.1162 11 7 3.4918 -3.6444 0.1620 12 6 2.0310 -3.6060 0.2666 13 6 4.1970 -4.9272 0.2197 14 6 4.5429 -5.2463 1.6512 15 1 4.2657 -4.5619 2.4393 16 6 5.2144 -6.4116 1.9548 17 7 5.5525 -7.2449 0.9952 18 14 5.6438 -6.8069 3.7294 19 1 4.3981 -6.8907 4.5332 20 1 6.3586 -8.1073 3.7878 21 1 6.5158 -5.7372 4.2776 22 7 2.1444 -1.1505 0.0056 23 1 -0.3634 0.0050 1.0276 24 1 -0.3632 0.8876 -0.5181 25 1 -0.3634 -0.8923 -0.5096 26 1 5.1064 2.4373 -0.0117 27 1 2.7844 3.6197 0.7554 28 1 4.0408 4.3789 -0.0264 29 1 5.2718 -0.0034 -0.0003 30 1 1.5959 -3.5736 -0.7323 31 1 1.6806 -4.4975 0.7868 32 1 1.7298 -2.7186 0.8231 33 1 3.5567 -5.7121 -0.1831 34 1 5.1115 -4.8660 -0.3703 35 1 6.0251 -8.0646 1.2087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723241128.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:12 Heat of formation + Delta-G solvation = 36.705460 kcal Electronic energy + Delta-G solvation = -19801.979992 eV Core-core repulsion = 16642.931867 eV Total energy + Delta-G solvation = -3159.048125 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.26442 -40.37314 -38.32206 -36.75501 -34.94819 -34.22026 -33.85052 -30.01977 -29.84184 -28.85613 -27.41188 -26.15284 -24.07906 -23.68081 -20.85400 -19.52872 -18.89218 -18.70651 -18.01682 -17.23233 -16.86149 -16.60890 -16.29284 -16.17469 -15.91513 -15.43003 -14.79194 -14.40437 -14.27346 -13.91705 -13.66747 -13.50102 -13.15463 -13.07824 -12.98113 -12.74663 -12.54230 -12.22233 -11.77319 -11.69178 -11.31586 -11.26403 -10.64823 -10.58738 -9.97859 -9.45952 -8.67057 -8.23133 -6.38785 -0.42828 0.14105 1.37385 1.41588 1.49164 1.60892 1.84351 2.16385 2.39921 2.83755 2.95640 3.04680 3.06958 3.55852 3.87785 4.09892 4.40271 4.50747 4.62136 4.83622 4.86760 4.87615 4.94758 5.01188 5.18554 5.26276 5.36346 5.53526 5.62702 5.79414 5.91270 6.02450 6.42023 6.58501 6.68924 6.90394 7.15407 7.30050 7.34870 8.84191 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.027581 B = 0.004694 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.965221 B = 5963.552808 C = 6373.804394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.345 3.655 3 N -0.559 5.559 4 C 0.446 3.554 5 N -0.544 5.544 6 N -0.601 5.601 7 C -0.242 4.242 8 C 0.158 3.842 9 C 0.545 3.455 10 O -0.578 6.578 11 N -0.581 5.581 12 C 0.084 3.916 13 C 0.256 3.744 14 C -0.547 4.547 15 H 0.052 0.948 16 C 0.011 3.989 17 N -0.926 5.926 18 Si 0.970 3.030 19 H -0.261 1.261 20 H -0.276 1.276 21 H -0.277 1.277 22 N -0.539 5.539 23 H 0.102 0.898 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.428 0.572 27 H 0.351 0.649 28 H 0.376 0.624 29 H 0.153 0.847 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.029 0.971 34 H 0.005 0.995 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.625 20.601 -0.156 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.077 3.923 3 N -0.286 5.286 4 C 0.198 3.802 5 N -0.270 5.270 6 N -0.230 5.230 7 C -0.273 4.273 8 C 0.016 3.984 9 C 0.331 3.669 10 O -0.459 6.459 11 N -0.309 5.309 12 C -0.058 4.058 13 C 0.135 3.865 14 C -0.586 4.586 15 H 0.070 0.930 16 C -0.189 4.189 17 N -0.566 5.566 18 Si 0.794 3.206 19 H -0.185 1.185 20 H -0.200 1.200 21 H -0.202 1.202 22 N -0.262 5.262 23 H 0.120 0.880 24 H 0.117 0.883 25 H 0.115 0.885 26 H 0.271 0.729 27 H 0.166 0.834 28 H 0.193 0.807 29 H 0.171 0.829 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.131 0.869 33 H 0.047 0.953 34 H 0.023 0.977 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.224 20.270 -0.953 22.723 hybrid contribution 2.480 -0.302 1.532 2.931 sum -7.744 19.968 0.579 21.425 Atomic orbital electron populations 1.20713 0.82461 1.05303 1.05194 1.23931 0.99531 0.81824 0.86977 1.67813 1.07062 1.30862 1.22850 1.18167 0.88768 0.85136 0.88152 1.42927 1.07076 0.98898 1.78108 1.59833 1.18122 0.94101 1.50953 1.21948 1.02954 0.91136 1.11242 1.21032 0.90530 0.92881 0.93951 1.18360 0.86220 0.84040 0.78243 1.90695 1.15175 1.87155 1.52832 1.48108 1.09402 1.06471 1.66954 1.22384 0.76944 1.03923 1.02561 1.18944 0.91685 0.79420 0.96452 1.21613 1.38144 1.05653 0.93175 0.92954 1.25857 0.94923 0.95632 1.02442 1.70039 1.40271 1.11945 1.34311 0.85435 0.78831 0.77427 0.78919 1.18546 1.20040 1.20211 1.68710 1.07343 1.29807 1.20368 0.87954 0.88314 0.88472 0.72873 0.83374 0.80735 0.82938 0.91897 0.92338 0.86938 0.95258 0.97704 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.31 71.23 0.73 -0.54 16 2 C 0.35 8.94 7.64 138.80 1.06 10.00 16 3 N -0.56 -14.38 9.81 -185.47 -1.82 -16.20 16 4 C 0.45 11.38 7.59 133.30 1.01 12.39 16 5 N -0.54 -9.31 6.61 -55.04 -0.36 -9.68 16 6 N -0.60 -7.81 10.07 37.02 0.37 -7.44 16 7 C -0.24 -7.54 9.58 22.87 0.22 -7.32 16 8 C 0.16 5.86 6.64 41.83 0.28 6.13 16 9 C 0.55 25.63 7.67 86.97 0.67 26.30 16 10 O -0.58 -31.39 16.00 -3.64 -0.06 -31.45 16 11 N -0.58 -27.57 2.86 -853.90 -2.44 -30.01 16 12 C 0.08 3.08 9.35 127.77 1.19 4.27 16 13 C 0.26 14.48 5.15 85.63 0.44 14.92 16 14 C -0.55 -32.53 9.39 25.60 0.24 -32.29 16 15 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 16 C 0.01 0.63 5.46 84.65 0.46 1.10 16 17 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 18 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 N -0.54 -17.01 6.11 -177.32 -1.08 -18.09 16 23 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 24 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.43 5.20 8.84 -215.50 -1.91 3.29 16 27 H 0.35 4.41 9.03 -210.57 -1.90 2.51 16 28 H 0.38 2.20 9.21 -210.56 -1.94 0.27 16 29 H 0.15 4.59 7.74 -2.91 -0.02 4.57 16 30 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.06 2.15 8.03 -2.39 -0.02 2.13 16 32 H 0.11 3.80 5.25 -2.43 -0.01 3.79 16 33 H 0.03 1.67 8.07 -2.38 -0.02 1.65 16 34 H 0.00 0.31 7.39 -2.39 -0.02 0.29 16 35 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -77.83 306.65 -1.36 -79.19 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.59 Total: 7.68 kcal Atomic # 6 Polarization: 28.66 SS G_CDS: 6.31 Total: 34.97 kcal Atomic # 7 Polarization: -132.69 SS G_CDS: -5.05 Total: -137.73 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.06 Total: -31.45 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -77.83 -1.36 -79.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723241128.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.896 kcal (2) G-P(sol) polarization free energy of solvation -77.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds