Wall clock time and date at job start Mon Mar 30 2020 05:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47057 * 2 1 4 4 C 1.46495 * 120.00251 * 262.95474 * 3 2 1 5 5 C 1.50692 * 109.47234 * 269.99673 * 4 3 2 6 6 H 1.08000 * 120.00083 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00223 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99798 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00199 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47262 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47123 * 119.99884 * 9 7 5 12 12 H 1.48496 * 109.47069 * 239.99618 * 9 7 5 13 13 C 1.34777 * 119.99634 * 82.94985 * 3 2 1 14 14 O 1.21477 * 120.00085 * 183.22589 * 13 3 2 15 15 C 1.48470 * 120.00374 * 3.23492 * 13 3 2 16 16 C 1.39504 * 120.50783 * 173.27379 * 15 13 3 17 17 C 1.38775 * 118.42237 * 179.74628 * 16 15 13 18 18 N 1.32133 * 119.24565 * 0.25621 * 17 16 15 19 19 C 1.32570 * 120.96268 * 0.02562 * 18 17 16 20 20 N 1.38432 * 119.13859 * 180.02562 * 19 18 17 21 21 N 1.36599 * 120.00107 * 359.97438 * 20 19 18 22 22 N 1.32289 * 121.71850 * 0.02562 * 19 18 17 23 23 H 1.09003 * 109.46484 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47204 * 299.99250 * 1 2 3 25 25 H 1.08998 * 109.47416 * 59.99826 * 1 2 3 26 26 H 1.09004 * 109.47606 * 240.00639 * 2 1 3 27 27 H 1.08998 * 109.47416 * 120.00174 * 2 1 3 28 28 H 1.08998 * 109.47156 * 30.00017 * 4 3 2 29 29 H 1.09004 * 109.47002 * 149.99571 * 4 3 2 30 30 H 0.97000 * 119.99812 * 180.02562 * 8 7 5 31 31 H 1.08002 * 120.79024 * 0.03092 * 16 15 13 32 32 H 1.08002 * 120.37315 * 180.23327 * 17 16 15 33 33 H 0.97000 * 119.99900 * 179.97438 * 20 19 18 34 34 H 1.00900 * 111.00299 * 56.04605 * 21 20 19 35 35 H 1.00894 * 111.00135 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4092 2.0200 -1.2591 5 6 3.8726 1.7692 -1.5165 6 1 4.4534 1.1913 -0.8128 7 6 4.4702 2.2773 -2.6504 8 7 3.7628 2.9806 -3.5075 9 14 6.2841 1.9657 -2.9699 10 1 6.8492 1.1530 -1.8630 11 1 6.4423 1.2342 -4.2525 12 1 7.0029 3.2628 -3.0479 13 6 2.1078 2.0643 1.1584 14 8 2.4568 3.2278 1.1521 15 6 1.7802 1.3946 2.4424 16 6 2.0018 2.0444 3.6568 17 6 1.6749 1.3803 4.8306 18 7 1.1724 0.1601 4.7634 19 6 0.9782 -0.4342 3.5944 20 7 0.4490 -1.7130 3.5680 21 7 0.1345 -2.3464 4.7368 22 7 1.2771 0.1630 2.4525 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8199 1.6036 -2.0760 29 1 2.2307 3.0933 -1.1927 30 1 4.1832 3.3378 -4.3054 31 1 2.4137 3.0425 3.6826 32 1 1.8299 1.8552 5.7881 33 1 0.3014 -2.1595 2.7196 34 1 -0.5076 -1.7945 5.2857 35 1 -0.2390 -3.2668 4.5601 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723317848.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:10 Heat of formation + Delta-G solvation = 71.537518 kcal Electronic energy + Delta-G solvation = -20189.077821 eV Core-core repulsion = 17031.540127 eV Total energy + Delta-G solvation = -3157.537694 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.07995 -38.80257 -36.97661 -35.44002 -33.71442 -32.60930 -31.74628 -29.99979 -28.09920 -27.39392 -25.11730 -23.62052 -22.84569 -22.24795 -19.50952 -18.83530 -17.46933 -16.54453 -16.39462 -16.18159 -15.54951 -15.43111 -15.17412 -14.60185 -14.25904 -14.06684 -13.85406 -13.06313 -13.00021 -12.39117 -11.92481 -11.89719 -11.58934 -11.22537 -11.11963 -10.87866 -10.73597 -10.58921 -10.21176 -10.07001 -9.69621 -9.65678 -9.49073 -8.64108 -8.43740 -7.78738 -7.60678 -6.04718 -4.09604 0.86398 1.21844 2.43091 3.30509 3.35431 3.38662 3.43695 3.71494 4.02777 4.18728 4.41500 4.48411 4.82951 5.08817 5.18427 5.29794 5.46441 5.69536 5.79108 5.90447 5.99261 6.11400 6.30890 6.40099 6.48537 6.78686 6.95273 7.05944 7.34272 7.41944 7.52669 7.55586 7.91696 8.21554 8.33532 8.41004 8.83459 9.00552 9.55468 11.03377 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.027094 B = 0.005172 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.178772 B = 5412.811184 C = 5687.226387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.100 3.900 3 N -0.568 5.568 4 C 0.242 3.758 5 C -0.527 4.527 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.552 3.448 14 O -0.528 6.528 15 C 0.189 3.811 16 C -0.235 4.235 17 C 0.186 3.814 18 N -0.549 5.549 19 C 0.558 3.442 20 N -0.551 5.551 21 N -0.589 5.589 22 N -0.531 5.531 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.263 0.737 31 H 0.156 0.844 32 H 0.172 0.828 33 H 0.417 0.583 34 H 0.343 0.657 35 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.073 -9.465 14.284 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 N -0.297 5.297 4 C 0.123 3.877 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.336 3.664 14 O -0.404 6.404 15 C 0.040 3.960 16 C -0.261 4.261 17 C 0.018 3.982 18 N -0.272 5.272 19 C 0.200 3.800 20 N -0.282 5.282 21 N -0.216 5.216 22 N -0.258 5.258 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.173 0.827 32 H 0.189 0.811 33 H 0.258 0.742 34 H 0.158 0.842 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.522 -9.705 14.319 19.284 hybrid contribution 0.195 0.297 -0.892 0.960 sum -8.328 -9.408 13.428 18.389 Atomic orbital electron populations 1.22016 0.96973 1.00619 1.01145 1.21929 0.93558 0.83350 1.03537 1.48209 1.59908 1.13636 1.07944 1.19417 0.95381 0.94640 0.78234 1.21456 0.94641 1.33882 1.06557 0.92324 1.24928 0.98382 0.94866 0.95851 1.69945 1.36142 1.35341 1.11868 0.86428 0.84872 0.78070 0.77986 1.19782 1.20944 1.20828 1.17764 0.79933 0.86101 0.82623 1.90762 1.48001 1.15793 1.85872 1.21815 0.90386 0.88216 0.95587 1.22623 1.06588 1.04154 0.92768 1.22990 0.88504 0.88134 0.98574 1.67770 1.20069 1.11869 1.27462 1.19018 0.89406 0.86307 0.85239 1.42326 1.68127 1.13091 1.04680 1.59856 1.52001 1.03918 1.05790 1.68421 1.19345 1.10849 1.27180 0.92930 0.93098 0.93334 0.91135 0.87921 0.94596 0.93601 0.92739 0.82661 0.81094 0.74223 0.84186 0.82986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.59 37.16 0.36 -1.87 16 2 C 0.10 1.77 5.70 -4.04 -0.02 1.75 16 3 N -0.57 -12.58 2.47 -175.95 -0.44 -13.01 16 4 C 0.24 6.41 5.15 -5.20 -0.03 6.38 16 5 C -0.53 -15.05 9.39 -34.44 -0.32 -15.37 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 9 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.55 12.11 7.61 -12.04 -0.09 12.02 16 14 O -0.53 -13.30 16.00 5.39 0.09 -13.22 16 15 C 0.19 3.33 6.53 -82.65 -0.54 2.79 16 16 C -0.23 -3.47 9.71 -38.91 -0.38 -3.85 16 17 C 0.19 2.27 11.30 -17.22 -0.19 2.08 16 18 N -0.55 -7.40 9.78 -13.94 -0.14 -7.53 16 19 C 0.56 7.68 8.49 -322.93 -2.74 4.94 16 20 N -0.55 -5.69 6.63 29.75 0.20 -5.49 16 21 N -0.59 -4.80 10.02 60.35 0.60 -4.19 16 22 N -0.53 -8.19 4.62 -10.49 -0.05 -8.24 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.78 6.80 -51.93 -0.35 0.43 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.28 8.02 -51.93 -0.42 0.86 16 27 H 0.10 1.73 5.23 -51.99 -0.27 1.46 16 28 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 29 H 0.05 1.35 7.38 -51.93 -0.38 0.97 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.16 2.20 7.74 -52.49 -0.41 1.80 16 32 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.42 3.57 8.94 -185.16 -1.66 1.91 16 34 H 0.34 2.65 8.99 -181.36 -1.63 1.02 16 35 H 0.36 1.68 9.21 -181.37 -1.67 0.01 16 LS Contribution 303.46 15.07 4.57 4.57 Total: -1.00 -34.16 303.46 -11.52 -45.68 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.02 Total: -0.22 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: -4.06 Total: 10.53 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: 0.92 Total: -64.29 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.16 -11.52 -45.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723317848.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.219 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds